Wall clock time and date at job start Tue Mar 31 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 C 1.52995 * 109.46880 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47410 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99436 * 270.00197 * 5 4 3 7 7 H 1.07995 * 119.99963 * 37.48340 * 6 5 4 8 8 C 1.38806 * 119.99331 * 217.48107 * 6 5 4 9 9 N 1.31623 * 120.00573 * 23.41259 * 8 6 5 10 10 Si 1.86800 * 119.99876 * 203.40654 * 8 6 5 11 11 H 1.48497 * 109.47083 * 90.00406 * 10 8 6 12 12 H 1.48502 * 109.47381 * 210.00444 * 10 8 6 13 13 H 1.48502 * 109.46959 * 330.00694 * 10 8 6 14 14 C 1.46498 * 120.00334 * 89.99570 * 5 4 3 15 15 C 1.50705 * 109.47067 * 267.10025 * 14 5 4 16 16 C 1.33359 * 125.18867 * 90.00151 * 15 14 5 17 17 C 1.38463 * 114.92518 * 179.97438 * 16 15 14 18 18 C 1.33472 * 114.89251 * 359.97438 * 17 16 15 19 19 Br 1.89101 * 125.20869 * 179.97438 * 18 17 16 20 20 S 1.75874 * 125.19108 * 269.99613 * 15 14 5 21 21 H 1.08998 * 109.46605 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46852 * 299.99132 * 1 2 3 23 23 H 1.08999 * 109.47345 * 59.99558 * 1 2 3 24 24 H 1.09007 * 109.46691 * 240.00338 * 2 1 3 25 25 H 1.08999 * 109.47345 * 120.00442 * 2 1 3 26 26 H 1.09006 * 109.46684 * 60.00765 * 3 2 1 27 27 H 1.08999 * 109.47507 * 300.00342 * 3 2 1 28 28 H 1.08999 * 109.47218 * 60.00049 * 4 3 2 29 29 H 1.09009 * 109.47564 * 300.00135 * 4 3 2 30 30 H 0.96991 * 120.00085 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47245 * 147.09969 * 14 5 4 32 32 H 1.09002 * 109.46912 * 27.09724 * 14 5 4 33 33 H 1.07996 * 122.54008 * 0.02562 * 16 15 14 34 34 H 1.07999 * 122.55073 * 179.72704 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.2861 3.4699 -1.1858 7 1 3.6248 3.3087 -2.0242 8 6 5.3668 4.3321 -1.3098 9 7 6.4077 4.2014 -0.5149 10 14 5.3440 5.6780 -2.6050 11 1 4.7458 6.9091 -2.0290 12 1 6.7326 5.9627 -3.0476 13 1 4.5353 5.2322 -3.7679 14 6 4.3030 3.5137 1.2689 15 6 3.0698 4.2821 1.6689 16 6 2.0749 3.8033 2.4168 17 6 1.0431 4.6952 2.6557 18 6 1.2014 5.8990 2.1014 19 35 -0.0239 7.3326 2.2397 20 16 2.7232 5.9470 1.2206 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9329 0.9289 -0.8908 29 1 3.9338 0.9285 0.8891 30 1 7.1630 4.8037 -0.6019 31 1 5.1389 4.2035 1.1522 32 1 4.5411 2.7815 2.0406 33 1 2.0744 2.7964 2.8073 34 1 0.1744 4.4352 3.2424 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137647407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:40 Heat of formation + Delta-G solvation = 35.216652 kcal Electronic energy + Delta-G solvation = -16937.090051 eV Core-core repulsion = 14235.923586 eV Total energy + Delta-G solvation = -2701.166465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -37.66158 -36.09143 -34.14337 -31.78233 -31.19824 -29.32116 -27.68114 -25.24209 -23.94921 -22.52948 -21.00302 -20.24446 -18.64907 -16.96813 -16.31534 -14.98055 -14.88722 -14.80856 -13.86817 -13.67677 -13.48790 -12.81670 -12.51064 -12.48766 -12.28530 -12.06045 -11.81377 -11.29300 -11.06401 -10.84708 -10.70971 -10.66423 -10.62545 -10.34395 -10.22418 -10.14246 -9.92325 -9.88883 -9.73103 -8.61063 -7.95269 -7.88236 -6.76234 -5.96628 -3.50598 1.40474 1.60181 2.33897 2.65902 3.18484 3.31098 3.38432 3.40812 4.37937 5.13043 5.26378 5.36688 5.53378 5.58737 5.66854 5.84743 5.94452 6.00472 6.13587 6.28062 6.30804 6.34753 6.35761 6.53133 6.59065 6.63482 6.79314 6.89581 6.94579 7.14754 7.38280 7.71149 8.35105 9.00477 9.62645 10.20690 11.03087 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.006317 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.370384 B = 4431.277057 C = 6164.257014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.148 3.852 5 N -0.569 5.569 6 C -0.258 4.258 7 H 0.063 0.937 8 C 0.018 3.982 9 N -0.878 5.878 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.195 3.805 15 C -0.115 4.115 16 C -0.182 4.182 17 C -0.081 4.081 18 C -0.243 4.243 19 Br -0.025 7.025 20 S 0.160 5.840 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.135 0.865 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.657 0.823 6.651 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.183 4.183 4 C 0.022 3.978 5 N -0.286 5.286 6 C -0.388 4.388 7 H 0.080 0.920 8 C -0.183 4.183 9 N -0.518 5.518 10 Si 0.714 3.286 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.199 1.199 14 C 0.066 3.934 15 C -0.239 4.239 16 C -0.212 4.212 17 C -0.116 4.116 18 C -0.440 4.440 19 Br 0.059 6.941 20 S 0.423 5.577 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.138 2.519 5.818 11.958 hybrid contribution -0.733 -0.585 0.109 0.944 sum -10.871 1.934 5.927 12.532 Atomic orbital electron populations 1.21758 0.96752 1.00539 1.01559 1.21494 0.95042 0.98301 1.01170 1.22291 0.99302 0.94621 1.02101 1.20959 0.91239 0.86392 0.99165 1.43760 1.75230 1.08110 1.01536 1.19038 1.06227 1.22752 0.90830 0.91967 1.25148 0.94052 1.01102 0.98030 1.70013 1.04595 1.36827 1.40410 0.86548 0.77204 0.82991 0.81890 1.20509 1.21479 1.19895 1.19763 0.91297 0.95084 0.87243 1.26531 1.03947 0.95821 0.97576 1.19836 0.94745 1.00907 1.05697 1.20012 0.99891 0.91607 1.00056 1.25929 1.04087 0.98642 1.15302 1.96535 1.57072 1.42681 1.97847 1.84669 1.11196 1.11980 1.49852 0.93589 0.93108 0.93072 0.92585 0.92723 0.92087 0.92601 0.93106 0.94788 0.93172 0.87893 0.92880 0.84720 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.14 -2.48 5.54 -26.73 -0.15 -2.63 16 4 C 0.15 2.93 5.71 -4.04 -0.02 2.91 16 5 N -0.57 -13.09 2.41 -174.61 -0.42 -13.51 16 6 C -0.26 -6.63 9.43 -15.06 -0.14 -6.77 16 7 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 8 C 0.02 0.48 4.93 -17.43 -0.09 0.39 16 9 N -0.88 -23.72 11.56 55.49 0.64 -23.08 16 10 Si 0.89 20.80 29.61 -169.99 -5.03 15.77 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.19 4.24 5.86 -5.19 -0.03 4.21 16 15 C -0.12 -2.27 6.04 -36.01 -0.22 -2.49 16 16 C -0.18 -3.13 8.30 -41.20 -0.34 -3.47 16 17 C -0.08 -1.31 10.11 -41.17 -0.42 -1.73 16 18 C -0.24 -4.18 6.97 29.06 0.20 -3.97 16 19 Br -0.02 -0.36 34.07 -68.01 -2.32 -2.68 16 20 S 0.16 3.13 23.33 -107.50 -2.51 0.62 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.07 5.72 -51.93 -0.30 0.77 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 29 H 0.03 0.63 7.87 -51.92 -0.41 0.22 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.10 2.54 5.58 -51.93 -0.29 2.26 16 32 H 0.05 1.08 7.86 -51.93 -0.41 0.67 16 33 H 0.14 2.10 7.64 -52.49 -0.40 1.70 16 34 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -25.87 316.89 -10.59 -36.45 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.73 Total: -1.43 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.99 Total: -16.93 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.22 Total: -36.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.51 Total: 0.62 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.32 Total: -2.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.87 -10.59 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137647407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.671 kcal (2) G-P(sol) polarization free energy of solvation -25.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds