Wall clock time and date at job start Tue Mar 31 2020 12:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 C 1.52995 * 109.46880 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47410 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99436 * 270.00197 * 5 4 3 7 7 H 1.07995 * 119.99963 * 37.48340 * 6 5 4 8 8 C 1.38806 * 119.99331 * 217.48107 * 6 5 4 9 9 N 1.31623 * 120.00573 * 23.41259 * 8 6 5 10 10 Si 1.86800 * 119.99876 * 203.40654 * 8 6 5 11 11 H 1.48497 * 109.47083 * 90.00406 * 10 8 6 12 12 H 1.48502 * 109.47381 * 210.00444 * 10 8 6 13 13 H 1.48502 * 109.46959 * 330.00694 * 10 8 6 14 14 C 1.46498 * 120.00334 * 89.99570 * 5 4 3 15 15 C 1.50705 * 109.47067 * 267.10025 * 14 5 4 16 16 C 1.33359 * 125.18867 * 90.00151 * 15 14 5 17 17 C 1.38463 * 114.92518 * 179.97438 * 16 15 14 18 18 C 1.33472 * 114.89251 * 359.97438 * 17 16 15 19 19 Br 1.89101 * 125.20869 * 179.97438 * 18 17 16 20 20 S 1.75874 * 125.19108 * 269.99613 * 15 14 5 21 21 H 1.08998 * 109.46605 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46852 * 299.99132 * 1 2 3 23 23 H 1.08999 * 109.47345 * 59.99558 * 1 2 3 24 24 H 1.09007 * 109.46691 * 240.00338 * 2 1 3 25 25 H 1.08999 * 109.47345 * 120.00442 * 2 1 3 26 26 H 1.09006 * 109.46684 * 60.00765 * 3 2 1 27 27 H 1.08999 * 109.47507 * 300.00342 * 3 2 1 28 28 H 1.08999 * 109.47218 * 60.00049 * 4 3 2 29 29 H 1.09009 * 109.47564 * 300.00135 * 4 3 2 30 30 H 0.96991 * 120.00085 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47245 * 147.09969 * 14 5 4 32 32 H 1.09002 * 109.46912 * 27.09724 * 14 5 4 33 33 H 1.07996 * 122.54008 * 0.02562 * 16 15 14 34 34 H 1.07999 * 122.55073 * 179.72704 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.2861 3.4699 -1.1858 7 1 3.6248 3.3087 -2.0242 8 6 5.3668 4.3321 -1.3098 9 7 6.4077 4.2014 -0.5149 10 14 5.3440 5.6780 -2.6050 11 1 4.7458 6.9091 -2.0290 12 1 6.7326 5.9627 -3.0476 13 1 4.5353 5.2322 -3.7679 14 6 4.3030 3.5137 1.2689 15 6 3.0698 4.2821 1.6689 16 6 2.0749 3.8033 2.4168 17 6 1.0431 4.6952 2.6557 18 6 1.2014 5.8990 2.1014 19 35 -0.0239 7.3326 2.2397 20 16 2.7232 5.9470 1.2206 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9329 0.9289 -0.8908 29 1 3.9338 0.9285 0.8891 30 1 7.1630 4.8037 -0.6019 31 1 5.1389 4.2035 1.1522 32 1 4.5411 2.7815 2.0406 33 1 2.0744 2.7964 2.8073 34 1 0.1744 4.4352 3.2424 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137647407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:39 Heat of formation + Delta-G solvation = 24.607782 kcal Electronic energy + Delta-G solvation = -16937.550086 eV Core-core repulsion = 14235.923586 eV Total energy + Delta-G solvation = -2701.626500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15084 -37.62981 -35.55958 -33.45856 -32.69399 -30.74144 -29.18024 -26.93467 -25.45222 -23.94943 -22.48917 -21.68400 -20.09388 -18.71135 -17.90498 -16.75113 -16.31139 -16.24418 -15.55595 -15.29459 -14.79015 -14.20201 -13.95344 -13.86086 -13.71958 -13.49693 -13.15436 -13.02545 -12.83003 -12.50577 -12.18003 -12.12225 -12.01061 -11.92323 -11.70983 -11.60709 -11.46645 -11.20403 -11.18018 -10.53726 -9.42304 -9.32735 -8.62751 -7.89667 -5.48322 -0.00985 0.22424 0.93931 1.19806 1.40316 1.46228 1.50273 1.81410 2.46847 3.18394 3.73138 4.15755 4.20970 4.34731 4.46327 4.50709 4.55182 4.62302 4.77521 4.94307 5.02314 5.09785 5.10180 5.12882 5.22952 5.29535 5.41463 5.47590 5.55341 5.67054 5.70136 5.71848 6.42033 7.11097 7.78878 8.31860 9.05733 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.006317 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.370384 B = 4431.277057 C = 6164.257014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.146 3.854 5 N -0.584 5.584 6 C -0.259 4.259 7 H 0.048 0.952 8 C -0.017 4.017 9 N -0.905 5.905 10 Si 0.926 3.074 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.202 3.798 15 C -0.136 4.136 16 C -0.159 4.159 17 C -0.076 4.076 18 C -0.236 4.236 19 Br 0.004 6.996 20 S 0.104 5.896 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.254 0.746 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.158 0.842 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 0.143 7.966 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.167 4.167 4 C 0.021 3.979 5 N -0.303 5.303 6 C -0.390 4.390 7 H 0.066 0.934 8 C -0.216 4.216 9 N -0.548 5.548 10 Si 0.754 3.246 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.073 3.927 15 C -0.258 4.258 16 C -0.190 4.190 17 C -0.110 4.110 18 C -0.432 4.432 19 Br 0.087 6.913 20 S 0.366 5.634 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.176 0.824 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.474 1.833 7.134 14.486 hybrid contribution -0.135 -0.355 -0.186 0.423 sum -12.609 1.478 6.947 14.472 Atomic orbital electron populations 1.21725 0.95281 1.01853 1.01432 1.21454 0.96274 0.95907 1.01894 1.22087 0.97149 0.96680 1.00831 1.21062 0.92893 0.84884 0.99063 1.43898 1.75855 1.09406 1.01136 1.19032 1.05509 1.22800 0.91631 0.93430 1.25561 0.93995 1.02553 0.99504 1.70091 1.05079 1.37636 1.41988 0.85900 0.76888 0.81288 0.80520 1.20720 1.21629 1.19559 1.19484 0.91346 0.94812 0.87017 1.26123 1.03990 0.95782 0.99886 1.20128 0.93592 1.01806 1.03426 1.20346 1.00439 0.90692 0.99506 1.26083 1.02990 0.99928 1.14226 1.96569 1.55445 1.41617 1.97683 1.84828 1.13897 1.13097 1.51587 0.91586 0.92663 0.93791 0.92647 0.91259 0.91927 0.95149 0.94657 0.93344 0.93633 0.91097 0.91772 0.82446 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.85 16 3 C -0.13 -4.26 5.54 30.59 0.17 -4.09 16 4 C 0.15 5.71 5.71 86.38 0.49 6.20 16 5 N -0.58 -27.15 2.41 -706.33 -1.70 -28.86 16 6 C -0.26 -13.61 9.43 84.03 0.79 -12.82 16 7 H 0.05 2.59 7.93 -2.91 -0.02 2.57 16 8 C -0.02 -0.92 4.93 84.86 0.42 -0.50 16 9 N -0.91 -50.43 11.56 21.65 0.25 -50.18 16 10 Si 0.93 43.65 29.61 68.60 2.03 45.68 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 C 0.20 8.83 5.86 85.64 0.50 9.33 16 15 C -0.14 -5.22 6.04 24.58 0.15 -5.07 16 16 C -0.16 -5.03 8.30 21.22 0.18 -4.85 16 17 C -0.08 -2.19 10.11 21.24 0.21 -1.98 16 18 C -0.24 -7.56 6.97 66.74 0.47 -7.10 16 19 Br 0.00 0.09 34.07 -20.37 -0.69 -0.60 16 20 S 0.10 4.03 23.33 -56.49 -1.32 2.71 16 21 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.04 5.72 -2.38 -0.01 2.03 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 29 H 0.05 1.73 7.87 -2.38 -0.02 1.71 16 30 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.07 3.62 5.58 -2.39 -0.01 3.61 16 32 H 0.06 2.58 7.86 -2.39 -0.02 2.56 16 33 H 0.16 4.27 7.64 -2.91 -0.02 4.25 16 34 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -56.16 316.89 3.92 -52.24 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.08 Total: 5.26 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.27 Total: -26.25 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.45 Total: -79.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.32 Total: 2.71 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.60 kcal Total: -56.16 3.92 -52.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137647407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.843 kcal (2) G-P(sol) polarization free energy of solvation -56.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds