Wall clock time and date at job start Tue Mar 31 2020 11:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.38349 * 120.01235 * 89.99837 * 13 12 2 15 15 Cl 1.73609 * 120.00945 * 0.02562 * 14 13 12 16 16 C 1.38344 * 119.98513 * 180.02562 * 14 13 12 17 17 C 1.38240 * 120.00327 * 359.97438 * 16 14 13 18 18 C 1.38201 * 120.02517 * 359.97438 * 17 16 14 19 19 C 1.38282 * 120.01018 * 269.72656 * 13 12 2 20 20 Br 1.89103 * 120.00351 * 359.97438 * 19 13 12 21 21 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 22 22 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 23 23 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 24 24 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 25 25 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 26 26 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 28 28 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 29 29 H 1.07997 * 119.99721 * 179.97438 * 16 14 13 30 30 H 1.08001 * 119.98591 * 179.97438 * 17 16 14 31 31 H 1.07999 * 119.99102 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 0.4503 -2.7041 -1.4942 15 17 -0.6260 -1.6357 -2.3392 16 6 0.1215 -4.0392 -1.3421 17 6 0.9788 -4.8900 -0.6697 18 6 2.1649 -4.4075 -0.1496 19 6 2.4967 -3.0734 -0.3051 20 35 4.1229 -2.4150 0.4006 21 1 -0.3632 -1.0253 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4511 -0.9233 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 2.9859 4.9182 0.7765 27 1 1.5612 -0.3873 -2.0628 28 1 3.0798 -0.6612 -1.1755 29 1 -0.8050 -4.4169 -1.7487 30 1 0.7217 -5.9322 -0.5507 31 1 2.8344 -5.0728 0.3753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137809574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:16 Heat of formation + Delta-G solvation = 29.423402 kcal Electronic energy + Delta-G solvation = -16547.049591 eV Core-core repulsion = 13707.755111 eV Total energy + Delta-G solvation = -2839.294480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -39.65613 -36.54911 -36.28626 -32.86303 -32.19933 -31.14857 -29.21877 -27.16868 -26.62638 -23.94174 -22.52574 -21.53328 -20.10974 -16.99664 -16.28870 -16.03976 -15.34446 -15.05616 -14.44589 -13.92339 -13.77279 -13.57532 -13.07897 -12.62315 -12.06952 -11.91576 -11.80446 -11.64171 -11.24938 -11.04940 -10.91612 -10.66555 -10.57318 -10.50068 -10.25355 -9.94152 -9.68233 -9.20892 -8.74911 -8.64331 -8.38131 -7.18553 -5.98357 -3.98937 0.94790 1.08778 1.71796 2.21423 3.36519 3.39990 3.40440 3.44122 4.46313 4.64358 4.78365 4.88320 5.13371 5.24841 5.35155 5.38109 5.55943 5.71921 6.02823 6.11732 6.14499 6.26046 6.27865 6.47496 6.53613 6.83038 7.31935 7.37712 7.82881 8.11170 8.22714 8.57141 9.07972 9.64538 11.12588 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.005747 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.526590 B = 4870.575349 C = 6185.879276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.523 5.523 3 C 0.196 3.804 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.075 3.925 13 C -0.026 4.026 14 C -0.030 4.030 15 Cl -0.057 7.057 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.091 4.091 19 C -0.066 4.066 20 Br -0.025 7.025 21 H 0.043 0.957 22 H 0.071 0.929 23 H 0.017 0.983 24 H 0.031 0.969 25 H -0.009 1.009 26 H 0.261 0.739 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -18.776 -4.705 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.248 5.248 3 C 0.071 3.929 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.054 4.054 13 C -0.029 4.029 14 C -0.058 4.058 15 Cl -0.028 7.028 16 C -0.120 4.120 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.146 4.146 20 Br 0.061 6.939 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.009 0.991 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.549 -18.441 -4.114 18.902 hybrid contribution -0.985 0.882 -0.113 1.328 sum -1.534 -17.559 -4.227 18.125 Atomic orbital electron populations 1.22445 0.88814 0.99514 1.00649 1.62181 1.06987 1.17710 1.37885 1.19726 0.95458 0.81022 0.96661 1.21095 1.34702 0.96784 1.01606 0.91923 1.24962 0.95367 0.97327 0.96887 1.69948 1.38441 1.11443 1.34075 0.86581 0.78663 0.78323 0.83959 1.20182 1.21407 1.20335 1.21285 1.01714 0.87685 0.94689 1.19785 0.91604 0.97180 0.94322 1.20772 0.92740 0.91561 1.00703 1.98379 1.63346 1.65052 1.75976 1.21110 1.00368 0.91319 0.99174 1.21013 0.93835 0.99919 0.98481 1.21186 0.97317 0.93601 0.98974 1.21681 0.95455 0.95037 1.02453 1.96765 1.24777 1.88284 1.84070 0.93808 0.90983 0.96477 0.95047 0.99120 0.92939 0.93795 0.89219 0.84691 0.84584 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 7.82 60.07 0.47 1.17 16 2 N -0.52 -11.47 4.74 -245.82 -1.17 -12.64 16 3 C 0.20 5.15 4.72 -4.98 -0.02 5.12 16 4 C -0.50 -14.24 8.46 -34.44 -0.29 -14.53 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.07 1.40 4.45 -4.98 -0.02 1.37 16 13 C -0.03 -0.41 4.89 -104.56 -0.51 -0.92 16 14 C -0.03 -0.42 5.22 -39.50 -0.21 -0.63 16 15 Cl -0.06 -0.81 24.02 -51.86 -1.25 -2.05 16 16 C -0.10 -1.13 9.83 -39.54 -0.39 -1.52 16 17 C -0.11 -1.13 10.04 -39.59 -0.40 -1.53 16 18 C -0.09 -1.05 9.79 -39.55 -0.39 -1.44 16 19 C -0.07 -0.96 6.22 -39.52 -0.25 -1.21 16 20 Br -0.03 -0.38 31.78 -68.01 -2.16 -2.55 16 21 H 0.04 0.80 5.63 -51.93 -0.29 0.51 16 22 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 23 H 0.02 0.34 7.09 -51.93 -0.37 -0.03 16 24 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 0.82 6.88 -51.93 -0.36 0.46 16 28 H 0.09 1.71 6.42 -51.93 -0.33 1.37 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -30.08 290.02 -9.90 -39.98 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: -3.31 Total: -5.23 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.10 Total: -12.61 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.43 Total: -38.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.25 Total: -2.05 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.16 Total: -2.55 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.08 -9.90 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137809574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds