Wall clock time and date at job start Tue Mar 31 2020 12:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47385 * 2 1 4 4 N 1.46901 * 109.47314 * 180.09024 * 3 2 1 5 5 C 1.46895 * 111.00103 * 298.75426 * 4 3 2 6 6 C 1.50701 * 109.47358 * 293.31399 * 5 4 3 7 7 H 1.08001 * 119.99469 * 354.95150 * 6 5 4 8 8 C 1.37874 * 120.00145 * 174.96112 * 6 5 4 9 9 N 1.31515 * 120.00113 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00127 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46724 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47200 * 119.99370 * 10 8 6 13 13 H 1.48495 * 109.47066 * 239.99773 * 10 8 6 14 14 C 1.46904 * 110.99909 * 62.70889 * 4 3 2 15 15 C 1.50700 * 109.47198 * 66.04557 * 14 4 3 16 16 C 1.33388 * 122.54470 * 259.97669 * 15 14 4 17 17 S 1.75886 * 109.60683 * 180.02562 * 16 15 14 18 18 C 1.75880 * 90.97708 * 359.97438 * 17 16 15 19 19 C 1.33427 * 109.59748 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 122.54710 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47279 * 300.00228 * 1 2 3 22 22 H 1.09001 * 109.46890 * 59.99942 * 1 2 3 23 23 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47279 * 239.99772 * 2 1 3 25 25 H 1.09005 * 109.47283 * 119.99758 * 2 1 3 26 26 H 1.08997 * 109.47245 * 60.09297 * 3 2 1 27 27 H 1.08998 * 109.47064 * 300.08674 * 3 2 1 28 28 H 1.09007 * 109.47296 * 53.31512 * 5 4 3 29 29 H 1.08999 * 109.47486 * 173.30799 * 5 4 3 30 30 H 0.97002 * 120.00169 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.47242 * 306.04547 * 14 4 3 32 32 H 1.09001 * 109.46739 * 186.04456 * 14 4 3 33 33 H 1.08007 * 125.19768 * 359.75456 * 16 15 14 34 34 H 1.07997 * 125.19712 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0022 5 6 4.0372 0.7821 1.1990 6 6 3.6941 1.6028 2.4154 7 1 3.2114 2.5621 2.3010 8 6 3.9967 1.1291 3.6744 9 7 4.5842 -0.0392 3.8138 10 14 3.5720 2.1467 5.1822 11 1 2.9216 3.4124 4.7580 12 1 2.6439 1.3799 6.0516 13 1 4.8135 2.4570 5.9356 14 6 4.0336 0.8142 -1.2221 15 6 3.6733 1.6589 -2.4170 16 6 2.6476 1.3679 -3.2184 17 16 2.5373 2.5711 -4.4966 18 6 3.9313 3.4280 -3.8515 19 6 4.3814 2.7967 -2.7656 20 35 5.8738 3.4086 -1.7784 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6781 1.9558 0.8908 27 1 1.6754 1.9567 -0.8892 28 1 3.5944 -0.2095 1.2930 29 1 5.1202 0.6899 1.1164 30 1 4.7968 -0.3727 4.6995 31 1 3.5991 -0.1790 -1.3350 32 1 5.1180 0.7304 -1.1501 33 1 1.9883 0.5202 -3.1030 34 1 4.3576 4.3275 -4.2703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139350696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:52 Heat of formation + Delta-G solvation = 34.906059 kcal Electronic energy + Delta-G solvation = -17007.873032 eV Core-core repulsion = 14306.693099 eV Total energy + Delta-G solvation = -2701.179933 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.84733 -36.54443 -32.77710 -32.02204 -31.03720 -29.36590 -27.14933 -26.31559 -24.04557 -22.50469 -22.07266 -19.54720 -18.31359 -17.46897 -16.16358 -15.23824 -15.17941 -14.71835 -14.22774 -13.81398 -13.26120 -12.97222 -12.90110 -12.79639 -12.39872 -11.94129 -11.53329 -11.25712 -11.16274 -10.96519 -10.81679 -10.78101 -10.58565 -10.48208 -10.37592 -9.92277 -9.80727 -9.65504 -9.16393 -8.64757 -8.39018 -8.21326 -7.09564 -5.98377 -3.98267 0.93775 1.30975 1.81290 2.48921 2.59934 3.33129 3.40939 3.46106 4.47040 4.86062 5.12353 5.23278 5.37618 5.42673 5.53891 5.56308 5.77553 5.83096 5.89732 6.04410 6.13321 6.24521 6.36200 6.43940 6.51047 6.53077 6.77382 6.97981 7.36198 7.46419 7.86421 8.14602 8.25028 8.60006 9.10192 9.65501 11.12306 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.005726 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.888726 B = 4888.922003 C = 6266.213736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.066 3.934 4 N -0.521 5.521 5 C 0.191 3.809 6 C -0.498 4.498 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.101 3.899 15 C -0.061 4.061 16 C -0.206 4.206 17 S 0.104 5.896 18 C -0.194 4.194 19 C -0.073 4.073 20 Br -0.015 7.015 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.002 0.998 29 H 0.026 0.974 30 H 0.259 0.741 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 4.174 -16.739 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.243 5.243 5 C 0.066 3.934 6 C -0.536 4.536 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.030 4.030 15 C -0.073 4.073 16 C -0.342 4.342 17 S 0.367 5.633 18 C -0.332 4.332 19 C -0.166 4.166 20 Br 0.069 6.931 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.184 0.816 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.422 5.007 -17.463 18.327 hybrid contribution 0.095 -0.735 1.857 2.000 sum -2.327 4.271 -15.605 16.346 Atomic orbital electron populations 1.21646 0.96565 1.00590 1.01196 1.22175 0.95466 1.00545 1.02040 1.22045 0.88552 0.94267 1.01351 1.62327 1.06233 1.54477 1.01311 1.19783 0.95070 0.93067 0.85455 1.21161 1.38299 1.04317 0.89867 0.91902 1.24950 0.95559 0.95078 0.98978 1.69965 1.42532 1.18570 1.22933 0.86517 0.78021 0.80390 0.82967 1.19687 1.21234 1.21123 1.20864 1.00723 0.93448 0.87936 1.18830 0.94848 0.95692 0.97970 1.25404 1.03864 1.05004 0.99977 1.84110 1.28822 1.20345 1.30056 1.25556 1.01600 1.05392 1.00660 1.20700 0.99398 0.98848 0.97695 1.96742 1.35601 1.87717 1.73042 0.92702 0.93649 0.93682 0.93290 0.90467 0.90179 0.93084 0.97983 0.95633 0.93123 0.94262 0.89990 0.81609 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 37.15 0.37 -1.70 16 2 C -0.16 -2.83 5.28 -26.74 -0.14 -2.97 16 3 C 0.07 1.26 4.94 -3.82 -0.02 1.24 16 4 N -0.52 -10.80 4.69 -237.52 -1.11 -11.91 16 5 C 0.19 4.80 4.51 -4.98 -0.02 4.77 16 6 C -0.50 -13.70 8.40 -34.44 -0.29 -13.99 16 7 H 0.06 1.75 7.35 -52.49 -0.39 1.36 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.10 1.79 4.52 -4.97 -0.02 1.77 16 15 C -0.06 -0.93 4.49 -106.23 -0.48 -1.41 16 16 C -0.21 -2.70 10.01 29.04 0.29 -2.41 16 17 S 0.10 1.16 23.34 -107.50 -2.51 -1.35 16 18 C -0.19 -2.41 11.05 29.05 0.32 -2.09 16 19 C -0.07 -1.10 6.16 -41.18 -0.25 -1.35 16 20 Br -0.02 -0.24 32.78 -68.01 -2.23 -2.47 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.79 6.33 -51.93 -0.33 0.46 16 25 H 0.08 1.59 6.29 -51.93 -0.33 1.27 16 26 H 0.08 1.69 6.97 -51.93 -0.36 1.33 16 27 H 0.05 0.89 6.53 -51.93 -0.34 0.55 16 28 H 0.00 0.07 6.01 -51.93 -0.31 -0.25 16 29 H 0.03 0.70 7.92 -51.93 -0.41 0.28 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.04 0.68 6.01 -51.93 -0.31 0.36 16 32 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 33 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -28.73 309.32 -10.23 -38.96 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.41 Total: -2.15 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.34 Total: -16.68 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.38 Total: -37.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.23 Total: -2.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.73 -10.23 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139350696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.862 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds