Wall clock time and date at job start Tue Mar 31 2020 12:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47385 * 2 1 4 4 N 1.46901 * 109.47314 * 180.09024 * 3 2 1 5 5 C 1.46895 * 111.00103 * 298.75426 * 4 3 2 6 6 C 1.50701 * 109.47358 * 293.31399 * 5 4 3 7 7 H 1.08001 * 119.99469 * 354.95150 * 6 5 4 8 8 C 1.37874 * 120.00145 * 174.96112 * 6 5 4 9 9 N 1.31515 * 120.00113 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00127 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46724 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47200 * 119.99370 * 10 8 6 13 13 H 1.48495 * 109.47066 * 239.99773 * 10 8 6 14 14 C 1.46904 * 110.99909 * 62.70889 * 4 3 2 15 15 C 1.50700 * 109.47198 * 66.04557 * 14 4 3 16 16 C 1.33388 * 122.54470 * 259.97669 * 15 14 4 17 17 S 1.75886 * 109.60683 * 180.02562 * 16 15 14 18 18 C 1.75880 * 90.97708 * 359.97438 * 17 16 15 19 19 C 1.33427 * 109.59748 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 122.54710 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47279 * 300.00228 * 1 2 3 22 22 H 1.09001 * 109.46890 * 59.99942 * 1 2 3 23 23 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47279 * 239.99772 * 2 1 3 25 25 H 1.09005 * 109.47283 * 119.99758 * 2 1 3 26 26 H 1.08997 * 109.47245 * 60.09297 * 3 2 1 27 27 H 1.08998 * 109.47064 * 300.08674 * 3 2 1 28 28 H 1.09007 * 109.47296 * 53.31512 * 5 4 3 29 29 H 1.08999 * 109.47486 * 173.30799 * 5 4 3 30 30 H 0.97002 * 120.00169 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.47242 * 306.04547 * 14 4 3 32 32 H 1.09001 * 109.46739 * 186.04456 * 14 4 3 33 33 H 1.08007 * 125.19768 * 359.75456 * 16 15 14 34 34 H 1.07997 * 125.19712 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0022 5 6 4.0372 0.7821 1.1990 6 6 3.6941 1.6028 2.4154 7 1 3.2114 2.5621 2.3010 8 6 3.9967 1.1291 3.6744 9 7 4.5842 -0.0392 3.8138 10 14 3.5720 2.1467 5.1822 11 1 2.9216 3.4124 4.7580 12 1 2.6439 1.3799 6.0516 13 1 4.8135 2.4570 5.9356 14 6 4.0336 0.8142 -1.2221 15 6 3.6733 1.6589 -2.4170 16 6 2.6476 1.3679 -3.2184 17 16 2.5373 2.5711 -4.4966 18 6 3.9313 3.4280 -3.8515 19 6 4.3814 2.7967 -2.7656 20 35 5.8738 3.4086 -1.7784 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6781 1.9558 0.8908 27 1 1.6754 1.9567 -0.8892 28 1 3.5944 -0.2095 1.2930 29 1 5.1202 0.6899 1.1164 30 1 4.7968 -0.3727 4.6995 31 1 3.5991 -0.1790 -1.3350 32 1 5.1180 0.7304 -1.1501 33 1 1.9883 0.5202 -3.1030 34 1 4.3576 4.3275 -4.2703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139350696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:51 Heat of formation + Delta-G solvation = 18.345854 kcal Electronic energy + Delta-G solvation = -17008.591137 eV Core-core repulsion = 14306.693099 eV Total energy + Delta-G solvation = -2701.898038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.14304 -37.96239 -34.79506 -33.48548 -32.22959 -30.66210 -28.88313 -27.71419 -25.71406 -23.78416 -23.63310 -21.11983 -19.42062 -18.57980 -18.23330 -16.89144 -16.40855 -16.38366 -15.87388 -15.25800 -14.71444 -14.21653 -14.19267 -14.02241 -13.87844 -13.34091 -13.16359 -12.81505 -12.63213 -12.55269 -12.52131 -12.26368 -12.21777 -11.96982 -11.62667 -11.55737 -11.27906 -11.18735 -10.95706 -10.55777 -9.70252 -9.21090 -8.77819 -8.14701 -6.22576 -0.07652 0.30319 0.80213 1.39812 1.41011 1.44235 1.47177 1.54316 2.43031 3.17938 3.54430 3.82293 4.07708 4.15708 4.20917 4.42906 4.52702 4.57335 4.63274 4.75838 4.79568 4.90338 5.08263 5.13937 5.16845 5.21849 5.35249 5.39846 5.48634 5.56127 5.73280 6.14455 6.44789 6.72303 6.94517 7.46129 8.95620 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.005726 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.888726 B = 4888.922003 C = 6266.213736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.072 3.928 4 N -0.527 5.527 5 C 0.210 3.790 6 C -0.508 4.508 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.107 3.893 15 C -0.085 4.085 16 C -0.207 4.207 17 S 0.183 5.817 18 C -0.191 4.191 19 C -0.100 4.100 20 Br -0.039 7.039 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.074 0.926 28 H -0.019 1.019 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.182 0.818 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 5.125 -18.613 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.056 4.056 4 N -0.250 5.250 5 C 0.084 3.916 6 C -0.546 4.546 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.207 1.207 14 C -0.023 4.023 15 C -0.098 4.098 16 C -0.344 4.344 17 S 0.447 5.553 18 C -0.330 4.330 19 C -0.192 4.192 20 Br 0.045 6.955 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.092 0.908 28 H -0.002 1.002 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.199 0.801 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.384 5.967 -19.363 20.730 hybrid contribution 0.651 -1.029 2.269 2.575 sum -3.733 4.938 -17.094 18.180 Atomic orbital electron populations 1.21601 0.93958 1.01811 1.02000 1.22045 0.97698 0.98919 1.00711 1.21984 0.87293 0.95283 1.01013 1.62177 1.07519 1.54334 1.00950 1.19357 0.93011 0.92084 0.87133 1.21413 1.37952 1.04196 0.91084 0.92522 1.25774 0.95402 0.96139 1.02033 1.70083 1.43592 1.20147 1.23725 0.85486 0.77892 0.78990 0.79197 1.19004 1.20470 1.20706 1.20730 0.99615 0.94184 0.87770 1.18572 0.96772 0.96420 0.98040 1.25673 1.02791 1.05847 1.00110 1.83921 1.26438 1.17662 1.27321 1.25929 1.01823 1.05692 0.99513 1.20702 0.99735 0.99769 0.99028 1.96708 1.37024 1.87858 1.73931 0.93558 0.91147 0.92296 0.91799 0.94571 0.92852 0.90785 1.00150 0.98759 0.92948 0.93873 0.91750 0.80077 0.79171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.97 16 2 C -0.15 -5.32 5.28 30.59 0.16 -5.15 16 3 C 0.07 2.74 4.94 86.30 0.43 3.16 16 4 N -0.53 -22.43 4.69 -905.38 -4.24 -26.68 16 5 C 0.21 11.10 4.51 85.56 0.39 11.48 16 6 C -0.51 -28.89 8.40 25.60 0.22 -28.67 16 7 H 0.06 3.23 7.35 -2.91 -0.02 3.21 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.11 3.87 4.52 85.56 0.39 4.26 16 15 C -0.09 -2.51 4.49 -20.91 -0.09 -2.61 16 16 C -0.21 -4.79 10.01 66.72 0.67 -4.12 16 17 S 0.18 3.30 23.34 -56.49 -1.32 1.98 16 18 C -0.19 -4.19 11.05 66.73 0.74 -3.46 16 19 C -0.10 -2.85 6.16 21.24 0.13 -2.72 16 20 Br -0.04 -1.24 32.78 -20.37 -0.67 -1.91 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.98 6.33 -2.39 -0.02 1.97 16 25 H 0.04 1.54 6.29 -2.38 -0.02 1.52 16 26 H 0.05 2.29 6.97 -2.39 -0.02 2.27 16 27 H 0.07 2.45 6.53 -2.39 -0.02 2.44 16 28 H -0.02 -1.08 6.01 -2.38 -0.01 -1.09 16 29 H -0.01 -0.33 7.92 -2.39 -0.02 -0.35 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.04 1.49 6.01 -2.39 -0.01 1.48 16 32 H 0.06 2.51 7.37 -2.39 -0.02 2.49 16 33 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -63.82 309.32 1.37 -62.45 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.10 Total: 3.39 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 4.19 Total: -30.11 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.96 Total: -82.94 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.32 Total: 1.98 kcal Atomic # 35 Polarization: -1.24 SS G_CDS: -0.67 Total: -1.91 kcal Total: -63.82 1.37 -62.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139350696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.797 kcal (2) G-P(sol) polarization free energy of solvation -63.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds