Wall clock time and date at job start Tue Mar 31 2020 11:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00250 * 3 2 1 5 5 H 1.48501 * 109.46734 * 30.00207 * 3 2 1 6 6 H 1.48498 * 109.46629 * 149.99794 * 3 2 1 7 7 C 1.37869 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00437 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.47246 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00195 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99701 * 180.02562 * 10 9 7 13 13 C 1.40227 * 119.99980 * 175.54606 * 12 10 9 14 14 C 1.38725 * 120.06003 * 34.63051 * 13 12 10 15 15 C 1.38201 * 120.02181 * 179.97438 * 14 13 12 16 16 C 1.38467 * 120.14183 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.93628 * 180.02562 * 16 15 14 18 18 C 1.38497 * 120.12235 * 0.02562 * 16 15 14 19 19 Br 1.89101 * 120.00908 * 179.97438 * 18 16 15 20 20 C 1.38609 * 119.97482 * 359.74459 * 18 16 15 21 21 O 1.35997 * 120.06824 * 180.27525 * 20 18 16 22 22 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46691 * 299.99807 * 9 7 2 24 24 H 1.08999 * 109.46829 * 59.99319 * 9 7 2 25 25 H 0.97001 * 119.99912 * 355.54024 * 12 10 9 26 26 H 1.07995 * 119.99063 * 0.02562 * 14 13 12 27 27 H 1.08003 * 119.92823 * 180.02562 * 15 14 13 28 28 H 0.96695 * 113.99967 * 270.22737 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0138 -2.6148 -0.0001 11 8 3.2256 -3.5368 -0.0001 12 7 5.3390 -2.8611 0.0009 13 6 5.8070 -4.1796 0.0951 14 6 5.0986 -5.2127 -0.5010 15 6 5.5609 -6.5118 -0.4081 16 6 6.7314 -6.7858 0.2789 17 9 7.1798 -8.0572 0.3667 18 6 7.4434 -5.7589 0.8763 19 35 9.0412 -6.1369 1.8144 20 6 6.9868 -4.4536 0.7822 21 8 7.6873 -3.4431 1.3633 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6796 -0.8895 24 1 3.8745 -0.6807 0.8905 25 1 5.9689 -2.1263 -0.0636 26 1 4.1860 -5.0016 -1.0386 27 1 5.0084 -7.3148 -0.8732 28 1 7.4301 -3.2612 2.2775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:54 Heat of formation + Delta-G solvation = -88.879376 kcal Electronic energy + Delta-G solvation = -18004.765193 eV Core-core repulsion = 14596.171250 eV Total energy + Delta-G solvation = -3408.593943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.985 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.08274 -40.60883 -38.67268 -36.72669 -34.45126 -33.02678 -32.15240 -30.24913 -29.25511 -28.45292 -24.04406 -23.16049 -22.19430 -19.95290 -18.97409 -17.75279 -17.31588 -16.82716 -16.74330 -15.96349 -15.65531 -14.85189 -14.69575 -14.47385 -14.00339 -13.93658 -13.46903 -13.04971 -12.57814 -12.34106 -11.89837 -11.83193 -11.37128 -11.16149 -10.95319 -10.71608 -10.49943 -10.14846 -10.02739 -9.42872 -9.16533 -8.90569 -8.70265 -8.06881 -6.15366 -4.17151 0.70320 0.80142 1.28503 2.94864 3.18371 3.23699 3.24056 3.29493 3.38648 3.66121 4.16045 4.29514 4.58867 4.91894 5.10783 5.14937 5.23642 5.51903 5.72686 5.98867 6.02945 6.27489 6.41184 6.70246 6.72592 7.26627 7.33449 7.71642 8.38410 8.66046 9.02258 9.41290 10.97146 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.031210 B = 0.003467 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.940972 B = 8073.846826 C = 8817.707395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.093 0.907 9 C -0.026 4.026 10 C 0.522 3.478 11 O -0.508 6.508 12 N -0.682 5.682 13 C 0.140 3.860 14 C -0.070 4.070 15 C -0.133 4.133 16 C 0.112 3.888 17 F -0.126 7.126 18 C -0.142 4.142 19 Br -0.023 7.023 20 C 0.122 3.878 21 O -0.478 6.478 22 H 0.266 0.734 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.414 0.586 26 H 0.164 0.836 27 H 0.149 0.851 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.469 -10.784 2.537 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.111 0.889 9 C -0.066 4.066 10 C 0.313 3.687 11 O -0.381 6.381 12 N -0.330 5.330 13 C 0.043 3.957 14 C -0.091 4.091 15 C -0.153 4.153 16 C 0.090 3.910 17 F -0.105 7.105 18 C -0.223 4.223 19 Br 0.063 6.937 20 C 0.072 3.928 21 O -0.288 6.288 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.251 0.749 26 H 0.182 0.818 27 H 0.167 0.833 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 19.545 -11.390 2.376 22.746 hybrid contribution 0.269 1.188 0.303 1.255 sum 19.813 -10.202 2.679 22.446 Atomic orbital electron populations 1.69884 1.06189 1.27048 1.49926 1.24963 0.94820 0.98788 0.94545 0.86892 0.80291 0.84012 0.78685 1.20018 1.20993 1.19073 1.20927 0.87279 0.95863 1.51688 0.88856 1.19717 0.99937 0.87819 0.99081 1.21836 0.79467 0.94245 0.73145 1.90588 1.54731 1.46592 1.46156 1.44088 1.09201 1.05402 1.74268 1.18129 0.92732 0.87144 0.97738 1.21409 1.00691 0.90344 0.96671 1.21117 0.94983 0.98366 1.00839 1.17116 0.94590 0.78506 1.00827 1.91536 1.88784 1.35666 1.94483 1.22062 0.97960 0.94451 1.07857 1.96712 1.28382 1.94995 1.73652 1.17486 0.91978 0.85666 0.97641 1.84827 1.61029 1.50869 1.32115 0.92401 0.93443 0.93043 0.74917 0.81830 0.83287 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 15 3 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -5.54 6.54 56.52 0.37 -5.17 15 7 C -0.52 -14.24 9.48 -34.44 -0.33 -14.57 15 8 H 0.09 2.91 7.00 -52.49 -0.37 2.54 15 9 C -0.03 -0.55 4.53 -29.04 -0.13 -0.69 15 10 C 0.52 10.17 7.67 -10.99 -0.08 10.08 15 11 O -0.51 -11.53 12.88 5.54 0.07 -11.45 15 12 N -0.68 -10.07 5.20 -9.73 -0.05 -10.13 15 13 C 0.14 1.99 6.32 -83.46 -0.53 1.46 15 14 C -0.07 -1.00 8.70 -39.41 -0.34 -1.34 15 15 C -0.13 -1.62 10.02 -39.51 -0.40 -2.01 15 16 C 0.11 1.41 7.26 -39.40 -0.29 1.13 15 17 F -0.13 -1.59 16.72 2.25 0.04 -1.55 15 18 C -0.14 -1.78 6.24 -39.35 -0.25 -2.03 15 19 Br -0.02 -0.25 32.73 -68.01 -2.23 -2.48 15 20 C 0.12 1.53 6.71 -39.07 -0.26 1.27 15 21 O -0.48 -5.06 12.39 -19.73 -0.24 -5.30 15 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 23 H 0.05 0.94 7.57 -51.93 -0.39 0.55 15 24 H 0.05 1.04 7.20 -51.93 -0.37 0.66 15 25 H 0.41 5.02 8.56 -40.82 -0.35 4.67 15 26 H 0.16 2.58 6.20 -52.49 -0.33 2.26 15 27 H 0.15 1.46 8.06 -52.48 -0.42 1.03 15 28 H 0.40 2.83 9.06 45.56 0.41 3.25 15 LS Contribution 276.44 15.07 4.17 4.17 Total: -1.00 -31.44 276.44 -5.83 -37.27 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -0.98 Total: 5.02 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.70 Total: -4.82 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.72 Total: -35.98 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.17 Total: -16.76 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.23 Total: -2.48 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.44 -5.83 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.611 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds