Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 O 1.42894 * 109.47446 * 120.00039 * 2 1 3 5 5 C 1.36021 * 116.99917 * 89.99508 * 4 2 1 6 6 C 1.38705 * 120.09714 * 269.98233 * 5 4 2 7 7 F 1.35103 * 119.99315 * 0.02562 * 6 5 4 8 8 C 1.38425 * 120.00628 * 180.02562 * 6 5 4 9 9 C 1.38439 * 120.18761 * 0.02562 * 8 6 5 10 10 Br 1.89100 * 119.90583 * 179.97438 * 9 8 6 11 11 C 1.38158 * 120.18765 * 359.72406 * 9 8 6 12 12 C 1.39016 * 119.99291 * 0.55290 * 11 9 8 13 13 N 1.39407 * 120.09725 * 179.72766 * 12 11 9 14 14 C 1.36814 * 119.99825 * 359.71617 * 13 12 11 15 15 H 1.08002 * 120.00288 * 0.02562 * 14 13 12 16 16 C 1.38767 * 120.00047 * 179.72784 * 14 13 12 17 17 N 1.31614 * 120.00104 * 0.27941 * 16 14 13 18 18 Si 1.86798 * 120.00348 * 180.28119 * 16 14 13 19 19 H 1.48506 * 109.46985 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 119.99925 * 18 16 14 21 21 H 1.48498 * 109.47150 * 240.00136 * 18 16 14 22 22 H 1.09000 * 109.47145 * 299.99844 * 1 2 3 23 23 H 1.09003 * 109.47360 * 59.99573 * 1 2 3 24 24 H 1.08993 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47145 * 240.00156 * 2 1 3 26 26 H 1.08996 * 109.47098 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.46853 * 300.00247 * 3 2 1 28 28 H 1.09000 * 109.46893 * 60.00002 * 3 2 1 29 29 H 1.08007 * 119.90574 * 179.97438 * 8 6 5 30 30 H 1.07995 * 120.00913 * 180.29871 * 11 9 8 31 31 H 0.97000 * 120.00492 * 179.72980 * 13 12 11 32 32 H 0.96996 * 120.00453 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2121 -2.0143 1.0649 6 6 1.1861 -2.8998 1.3597 7 9 -0.0200 -2.4310 1.7482 8 6 1.3977 -4.2639 1.2560 9 6 2.6321 -4.7486 0.8589 10 35 2.9127 -6.6136 0.7206 11 6 3.6581 -3.8735 0.5583 12 6 3.4558 -2.5023 0.6654 13 7 4.4913 -1.6176 0.3682 14 6 5.7105 -2.0985 -0.0241 15 1 5.8708 -3.1636 -0.1038 16 6 6.7396 -1.2177 -0.3254 17 7 6.5444 0.0803 -0.2287 18 14 8.4020 -1.8741 -0.8685 19 1 8.3632 -3.3584 -0.8958 20 1 8.7170 -1.3617 -2.2262 21 1 9.4475 -1.4242 0.0853 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.5977 -4.9520 1.4864 30 1 4.6185 -4.2547 0.2442 31 1 4.3474 -0.6609 0.4396 32 1 7.2638 0.6960 -0.4389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163191595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = -66.379411 kcal Electronic energy + Delta-G solvation = -19049.666013 eV Core-core repulsion = 15777.880836 eV Total energy + Delta-G solvation = -3271.785177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.24916 -39.27144 -37.11571 -35.29378 -32.76109 -32.08428 -30.72328 -28.43543 -27.64123 -26.86927 -24.98038 -22.03952 -21.40677 -20.64581 -18.19094 -17.61079 -16.80870 -15.68595 -15.43105 -15.24071 -14.52409 -14.36485 -14.12548 -13.89912 -13.64932 -12.93242 -12.70451 -12.47567 -12.02103 -11.96099 -11.93199 -11.57686 -11.54032 -11.34213 -10.93972 -10.88132 -10.54563 -10.44398 -10.26993 -9.86493 -9.72484 -9.28285 -8.95131 -7.84378 -7.05391 -6.86674 -4.01828 1.69490 2.09509 2.12779 3.00173 3.03708 3.07915 3.81728 3.92321 4.43673 4.78003 4.90703 5.12803 5.30958 5.41068 5.60010 5.78301 5.86873 5.93319 5.95995 6.08477 6.20012 6.28175 6.47675 6.54114 6.58417 6.65133 6.87087 6.91171 7.08464 7.30004 7.47846 8.26486 8.44554 8.98587 9.19574 10.27641 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.007344 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.418856 B = 3811.676425 C = 6602.333137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.311 6.311 5 C -0.064 4.064 6 C 0.151 3.849 7 F -0.142 7.142 8 C -0.262 4.262 9 C 0.001 3.999 10 Br -0.074 7.074 11 C -0.191 4.191 12 C 0.203 3.797 13 N -0.520 5.520 14 C -0.306 4.306 15 H 0.109 0.891 16 C 0.027 3.973 17 N -0.873 5.873 18 Si 0.936 3.064 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.409 0.591 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -5.245 -0.607 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.227 6.227 5 C -0.115 4.115 6 C 0.130 3.870 7 F -0.120 7.120 8 C -0.287 4.287 9 C -0.080 4.080 10 Br 0.011 6.989 11 C -0.216 4.216 12 C 0.074 3.926 13 N -0.118 5.118 14 C -0.436 4.436 15 H 0.127 0.873 16 C -0.179 4.179 17 N -0.507 5.507 18 Si 0.762 3.238 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.152 0.848 31 H 0.245 0.755 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.694 -5.524 -0.638 7.959 hybrid contribution 0.388 0.612 -0.351 0.805 sum -5.306 -4.912 -0.988 7.298 Atomic orbital electron populations 1.22318 0.96261 1.02588 1.01691 1.22391 0.93383 0.93566 0.88848 1.21852 1.02655 0.94305 1.01757 1.86245 1.85183 1.16612 1.34697 1.17648 0.92392 0.82962 1.18542 1.17365 0.79424 0.91417 0.98823 1.91395 1.42835 1.89311 1.88483 1.19950 0.97965 0.92832 1.17967 1.20849 0.95721 0.88235 1.03201 1.96550 1.97158 1.07742 1.97434 1.20253 0.99428 0.90438 1.11516 1.17554 0.87758 0.89923 0.97322 1.41097 1.07718 1.07865 1.55077 1.19940 0.87066 0.94829 1.41787 0.87297 1.25440 1.00730 0.95016 0.96729 1.69704 1.34747 1.01639 1.44620 0.85684 0.80210 0.79462 0.78479 1.18708 1.20208 1.20156 0.92109 0.92322 0.92133 0.92350 0.91215 0.91658 0.92138 0.85871 0.84848 0.75459 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.22 37.16 0.34 -2.25 16 2 C 0.07 1.30 3.40 -26.73 -0.09 1.21 16 3 C -0.15 -2.31 9.56 37.16 0.36 -1.96 16 4 O -0.31 -6.38 8.81 -19.81 -0.17 -6.56 16 5 C -0.06 -1.34 5.59 -38.96 -0.22 -1.56 16 6 C 0.15 3.00 7.10 -39.34 -0.28 2.72 16 7 F -0.14 -2.70 15.32 2.25 0.03 -2.66 16 8 C -0.26 -4.86 9.76 -39.44 -0.38 -5.25 16 9 C 0.00 0.02 6.22 -39.54 -0.25 -0.23 16 10 Br -0.07 -1.16 33.69 -68.01 -2.29 -3.45 16 11 C -0.19 -3.91 9.04 -39.32 -0.36 -4.26 16 12 C 0.20 4.47 6.63 -83.68 -0.56 3.91 16 13 N -0.52 -12.26 5.43 -9.52 -0.05 -12.31 16 14 C -0.31 -7.35 9.56 -15.13 -0.14 -7.49 16 15 H 0.11 2.50 5.68 -52.49 -0.30 2.20 16 16 C 0.03 0.64 5.50 -17.45 -0.10 0.55 16 17 N -0.87 -21.71 13.05 55.49 0.72 -20.99 16 18 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.97 6.42 -51.93 -0.33 0.64 16 25 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.13 2.71 5.96 -52.49 -0.31 2.40 16 31 H 0.41 9.93 7.24 -40.82 -0.30 9.64 16 32 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -24.24 299.02 -7.27 -31.51 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -3.32 Total: 11.07 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.67 Total: -14.61 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.67 Total: -33.30 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.17 Total: -6.56 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.03 Total: -2.66 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -2.29 Total: -3.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -24.24 -7.27 -31.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163191595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.869 kcal (2) G-P(sol) polarization free energy of solvation -24.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds