Wall clock time and date at job start Tue Mar 31 2020 12:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 O 1.42894 * 109.47446 * 120.00039 * 2 1 3 5 5 C 1.36021 * 116.99917 * 89.99508 * 4 2 1 6 6 C 1.38705 * 120.09714 * 269.98233 * 5 4 2 7 7 F 1.35103 * 119.99315 * 0.02562 * 6 5 4 8 8 C 1.38425 * 120.00628 * 180.02562 * 6 5 4 9 9 C 1.38439 * 120.18761 * 0.02562 * 8 6 5 10 10 Br 1.89100 * 119.90583 * 179.97438 * 9 8 6 11 11 C 1.38158 * 120.18765 * 359.72406 * 9 8 6 12 12 C 1.39016 * 119.99291 * 0.55290 * 11 9 8 13 13 N 1.39407 * 120.09725 * 179.72766 * 12 11 9 14 14 C 1.36814 * 119.99825 * 359.71617 * 13 12 11 15 15 H 1.08002 * 120.00288 * 0.02562 * 14 13 12 16 16 C 1.38767 * 120.00047 * 179.72784 * 14 13 12 17 17 N 1.31614 * 120.00104 * 0.27941 * 16 14 13 18 18 Si 1.86798 * 120.00348 * 180.28119 * 16 14 13 19 19 H 1.48506 * 109.46985 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 119.99925 * 18 16 14 21 21 H 1.48498 * 109.47150 * 240.00136 * 18 16 14 22 22 H 1.09000 * 109.47145 * 299.99844 * 1 2 3 23 23 H 1.09003 * 109.47360 * 59.99573 * 1 2 3 24 24 H 1.08993 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47145 * 240.00156 * 2 1 3 26 26 H 1.08996 * 109.47098 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.46853 * 300.00247 * 3 2 1 28 28 H 1.09000 * 109.46893 * 60.00002 * 3 2 1 29 29 H 1.08007 * 119.90574 * 179.97438 * 8 6 5 30 30 H 1.07995 * 120.00913 * 180.29871 * 11 9 8 31 31 H 0.97000 * 120.00492 * 179.72980 * 13 12 11 32 32 H 0.96996 * 120.00453 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2121 -2.0143 1.0649 6 6 1.1861 -2.8998 1.3597 7 9 -0.0200 -2.4310 1.7482 8 6 1.3977 -4.2639 1.2560 9 6 2.6321 -4.7486 0.8589 10 35 2.9127 -6.6136 0.7206 11 6 3.6581 -3.8735 0.5583 12 6 3.4558 -2.5023 0.6654 13 7 4.4913 -1.6176 0.3682 14 6 5.7105 -2.0985 -0.0241 15 1 5.8708 -3.1636 -0.1038 16 6 6.7396 -1.2177 -0.3254 17 7 6.5444 0.0803 -0.2287 18 14 8.4020 -1.8741 -0.8685 19 1 8.3632 -3.3584 -0.8958 20 1 8.7170 -1.3617 -2.2262 21 1 9.4475 -1.4242 0.0853 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.5977 -4.9520 1.4864 30 1 4.6185 -4.2547 0.2442 31 1 4.3474 -0.6609 0.4396 32 1 7.2638 0.6960 -0.4389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163191595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:58 Heat of formation + Delta-G solvation = -77.788332 kcal Electronic energy + Delta-G solvation = -19050.160741 eV Core-core repulsion = 15777.880836 eV Total energy + Delta-G solvation = -3272.279905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -49.81517 -40.88194 -38.67335 -36.94930 -34.23720 -33.71800 -32.20700 -30.06614 -29.22512 -28.13986 -26.69593 -23.59745 -23.03152 -22.10887 -19.88975 -19.19212 -18.39679 -17.32099 -16.97620 -16.88165 -16.07538 -15.95956 -15.61439 -15.43368 -15.20159 -14.40115 -14.24376 -13.94222 -13.64415 -13.35127 -13.20592 -13.11670 -13.00460 -12.84926 -12.48485 -12.30947 -12.10691 -12.02639 -11.73801 -11.25135 -11.22872 -10.79455 -10.61698 -9.40946 -8.74182 -8.58950 -5.82964 0.08730 0.48595 0.63667 1.42426 1.45052 1.55541 2.20526 2.35894 2.84201 3.11577 3.18012 3.49852 3.96898 4.08038 4.23733 4.25905 4.32847 4.44638 4.71021 4.75105 4.85497 4.90392 4.92262 5.09234 5.17231 5.21614 5.26977 5.32484 5.40067 5.63679 5.85531 6.67659 6.69100 7.29275 7.44105 8.57618 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.007344 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.418856 B = 3811.676425 C = 6602.333137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 C -0.142 4.142 4 O -0.329 6.329 5 C -0.067 4.067 6 C 0.143 3.857 7 F -0.136 7.136 8 C -0.239 4.239 9 C -0.003 4.003 10 Br -0.036 7.036 11 C -0.199 4.199 12 C 0.195 3.805 13 N -0.547 5.547 14 C -0.324 4.324 15 H 0.113 0.887 16 C -0.019 4.019 17 N -0.914 5.914 18 Si 0.998 3.002 19 H -0.254 1.254 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.399 0.601 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -6.706 -0.703 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 C -0.199 4.199 4 O -0.247 6.247 5 C -0.118 4.118 6 C 0.121 3.879 7 F -0.114 7.114 8 C -0.264 4.264 9 C -0.084 4.084 10 Br 0.049 6.951 11 C -0.225 4.225 12 C 0.070 3.930 13 N -0.147 5.147 14 C -0.454 4.454 15 H 0.131 0.869 16 C -0.220 4.220 17 N -0.551 5.551 18 Si 0.821 3.179 19 H -0.177 1.177 20 H -0.202 1.202 21 H -0.203 1.203 22 H 0.084 0.916 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.234 0.766 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.037 -7.038 -0.725 9.979 hybrid contribution 0.494 0.899 -0.241 1.053 sum -6.544 -6.139 -0.966 9.024 Atomic orbital electron populations 1.22248 0.93984 1.02403 1.03358 1.22586 0.95093 0.93874 0.87037 1.21831 1.00916 0.93530 1.03618 1.86179 1.85651 1.16532 1.36322 1.17888 0.92542 0.83624 1.17788 1.17458 0.79478 0.91800 0.99159 1.91411 1.42254 1.89346 1.88399 1.20322 0.98389 0.92667 1.15008 1.21055 0.95137 0.90276 1.01974 1.96587 1.97124 1.04087 1.97276 1.20357 1.00092 0.90173 1.11888 1.17953 0.87917 0.90602 0.96540 1.41033 1.08219 1.07402 1.58072 1.20172 0.87667 0.95109 1.42413 0.86947 1.26242 1.03660 0.95154 0.96978 1.69803 1.35590 1.02636 1.47036 0.84764 0.76187 0.79207 0.77739 1.17750 1.20159 1.20312 0.91566 0.89507 0.93178 0.94036 0.93888 0.88795 0.91189 0.83213 0.84978 0.76574 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.22 71.98 0.66 -3.97 16 2 C 0.07 2.43 3.40 30.59 0.10 2.53 16 3 C -0.14 -4.38 9.56 71.98 0.69 -3.69 16 4 O -0.33 -13.66 8.81 -93.79 -0.83 -14.49 16 5 C -0.07 -2.81 5.59 22.67 0.13 -2.68 16 6 C 0.14 5.42 7.10 22.43 0.16 5.58 16 7 F -0.14 -4.89 15.32 44.97 0.69 -4.20 16 8 C -0.24 -8.24 9.76 22.36 0.22 -8.02 16 9 C 0.00 -0.12 6.22 22.30 0.14 0.02 16 10 Br -0.04 -1.03 33.69 -20.37 -0.69 -1.72 16 11 C -0.20 -8.05 9.04 22.44 0.20 -7.85 16 12 C 0.19 8.68 6.63 38.41 0.25 8.93 16 13 N -0.55 -26.78 5.43 -184.02 -1.00 -27.78 16 14 C -0.32 -16.04 9.56 84.04 0.80 -15.24 16 15 H 0.11 5.26 5.68 -2.91 -0.02 5.25 16 16 C -0.02 -0.94 5.50 84.85 0.47 -0.47 16 17 N -0.91 -47.43 13.05 21.64 0.28 -47.15 16 18 Si 1.00 38.67 29.55 68.60 2.03 40.70 16 19 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.28 -10.53 7.11 99.48 0.71 -9.83 16 21 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.52 6.42 -2.39 -0.02 1.51 16 25 H 0.04 1.56 7.91 -2.39 -0.02 1.54 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.13 5.35 5.96 -2.91 -0.02 5.33 16 31 H 0.40 20.49 7.24 -92.71 -0.67 19.82 16 32 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -52.45 299.02 4.80 -47.65 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.49 Total: 31.84 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.83 Total: -24.85 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -0.72 Total: -74.93 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.83 Total: -14.49 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.69 Total: -4.20 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -0.69 Total: -1.72 kcal Total: -52.45 4.80 -47.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163191595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.138 kcal (2) G-P(sol) polarization free energy of solvation -52.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds