Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47179 * 59.99868 * 10 8 6 12 12 H 1.48500 * 109.47212 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47029 * 300.00042 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.50698 * 109.47212 * 179.97438 * 15 14 2 17 17 C 1.33396 * 125.19530 * 90.00268 * 16 15 14 18 18 C 1.38468 * 114.91338 * 179.97438 * 17 16 15 19 19 Br 1.89100 * 122.54821 * 179.97438 * 18 17 16 20 20 C 1.33429 * 114.90645 * 0.02562 * 18 17 16 21 21 S 1.75878 * 125.19789 * 269.69601 * 16 15 14 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 28 28 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 29 29 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 30 30 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 31 31 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 32 32 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 33 33 H 1.07996 * 122.54448 * 0.02626 * 17 16 15 34 34 H 1.08001 * 125.20718 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 5.4496 -1.6146 -5.5503 12 1 7.5212 -2.1359 -4.4033 13 1 5.6480 -3.6716 -4.2815 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5872 -0.5219 3.5561 17 6 3.8688 -0.6387 3.9073 18 6 4.0929 -1.3709 5.0610 19 35 5.8263 -1.6719 5.7542 20 6 2.9930 -1.8487 5.6459 21 16 1.5761 -1.3628 4.7239 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 3.8533 0.4369 -1.3572 28 1 3.9995 -1.0728 -0.4258 29 1 7.2197 -0.8012 -2.1916 30 1 2.9173 -1.1205 1.0288 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5525 33 1 4.6706 -0.1952 3.3357 34 1 2.9749 -2.4391 6.5501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = -0.185053 kcal Electronic energy + Delta-G solvation = -16120.282044 eV Core-core repulsion = 13417.580446 eV Total energy + Delta-G solvation = -2702.701598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -39.44164 -38.29607 -35.37976 -33.83279 -31.95059 -30.99130 -29.61992 -27.20665 -26.26874 -23.51985 -22.98785 -21.08997 -20.20226 -18.67044 -18.21809 -16.74925 -16.55909 -16.53213 -16.20353 -14.92075 -14.60610 -14.51418 -14.23996 -14.04109 -13.92976 -13.53444 -13.15103 -13.09095 -12.82414 -12.78432 -12.47537 -12.35892 -12.00716 -11.82881 -11.63485 -11.58119 -11.31436 -11.23407 -10.95738 -10.54001 -9.82525 -9.36251 -9.35135 -8.19918 -6.30273 -0.18951 0.16787 0.68494 1.31073 1.38554 1.39547 1.41942 1.49773 2.40796 3.13288 3.30767 3.72430 4.04696 4.07913 4.25224 4.32590 4.40830 4.50069 4.58958 4.79351 4.85999 4.99726 5.02260 5.06491 5.08930 5.13969 5.23121 5.46294 5.54076 5.69834 5.84645 6.15287 6.25804 6.34300 6.86124 7.38892 8.91083 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003925 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.848705 B = 7131.952923 C = 9144.647537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.034 0.966 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.683 5.683 15 C 0.128 3.872 16 C -0.172 4.172 17 C -0.135 4.135 18 C -0.114 4.114 19 Br -0.035 7.035 20 C -0.187 4.187 21 S 0.200 5.800 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.059 0.941 27 H -0.015 1.015 28 H -0.003 1.003 29 H 0.262 0.738 30 H 0.340 0.660 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -0.039 18.871 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.052 0.948 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.316 5.316 15 C -0.002 4.002 16 C -0.291 4.291 17 C -0.166 4.166 18 C -0.207 4.207 19 Br 0.048 6.952 20 C -0.326 4.326 21 S 0.463 5.537 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.003 0.997 28 H 0.015 0.985 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.888 -0.583 19.466 21.841 hybrid contribution 2.953 0.487 -1.345 3.281 sum -6.935 -0.096 18.121 19.403 Atomic orbital electron populations 1.21720 0.92825 1.02261 1.01779 1.21579 0.96615 0.95177 0.88939 0.94805 1.21645 0.96060 0.99869 0.96382 1.18998 0.92207 0.94466 0.95314 1.21663 0.92500 1.34650 1.09324 0.92390 1.25916 0.97372 0.96302 0.99918 1.70075 1.02713 1.45349 1.38966 0.85580 0.77003 0.79305 0.79654 1.19193 1.20947 1.19288 1.60781 1.33990 1.32456 1.04422 1.20444 1.01266 0.92243 0.86231 1.24470 0.96335 1.06065 1.02224 1.20002 0.97158 1.02286 0.97197 1.20676 0.92652 1.07310 1.00039 1.96684 1.17698 1.95754 1.85017 1.26053 0.94611 1.06107 1.05797 1.84076 1.06793 1.47385 1.15399 0.91880 0.91790 0.92340 0.92716 0.92240 0.99686 0.98458 0.92889 0.84068 0.93861 0.88184 0.84928 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.41 71.98 0.68 -2.58 16 2 C 0.09 2.81 2.65 44.92 0.12 2.93 16 3 H 0.03 1.14 7.80 -2.39 -0.02 1.13 16 4 C -0.10 -4.09 4.74 30.60 0.15 -3.94 16 5 C 0.03 1.41 4.80 29.85 0.14 1.56 16 6 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 7 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 0.17 5.46 84.66 0.46 0.63 16 9 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 10 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 N -0.68 -21.91 6.30 -495.56 -3.12 -25.03 16 15 C 0.13 3.44 5.97 85.56 0.51 3.95 16 16 C -0.17 -4.45 6.02 24.59 0.15 -4.30 16 17 C -0.13 -3.76 9.91 21.23 0.21 -3.55 16 18 C -0.11 -2.85 6.17 21.24 0.13 -2.71 16 19 Br -0.03 -0.83 33.87 -20.37 -0.69 -1.52 16 20 C -0.19 -3.78 11.05 66.73 0.74 -3.04 16 21 S 0.20 4.02 23.33 -56.49 -1.32 2.70 16 22 H 0.06 1.37 7.45 -2.39 -0.02 1.35 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.00 -0.15 6.43 -2.39 -0.02 -0.17 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.34 12.90 6.46 -89.69 -0.58 12.32 16 31 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 32 H 0.10 2.25 7.44 -2.38 -0.02 2.23 16 33 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -62.28 319.44 1.22 -61.07 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.52 Total: 14.34 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.52 Total: -41.73 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.84 Total: -81.38 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.32 Total: 2.70 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.69 Total: -1.52 kcal Total: -62.28 1.22 -61.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.883 kcal (2) G-P(sol) polarization free energy of solvation -62.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds