Wall clock time and date at job start Tue Mar 31 2020 12:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.52998 * 109.46837 * 185.00004 * 4 2 1 6 6 C 1.50700 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00347 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99880 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47020 * 90.00510 * 10 8 6 12 12 H 1.48504 * 109.47356 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47264 * 330.00445 * 10 8 6 14 14 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 15 15 C 1.46906 * 110.99888 * 84.99977 * 14 2 1 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 2 17 17 C 1.38455 * 122.55487 * 105.00149 * 16 15 14 18 18 C 1.33360 * 114.92845 * 180.02562 * 17 16 15 19 19 S 1.75879 * 109.61585 * 359.97438 * 18 17 16 20 20 C 1.33478 * 122.55392 * 284.71191 * 16 15 14 21 21 Br 1.89105 * 125.20620 * 0.02562 * 20 16 15 22 22 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 26 26 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 27 27 H 1.08999 * 109.47427 * 299.99661 * 5 4 2 28 28 H 1.09002 * 109.47632 * 60.00151 * 5 4 2 29 29 H 0.97000 * 119.99918 * 179.97438 * 9 8 6 30 30 H 1.00902 * 111.00533 * 321.04383 * 14 2 1 31 31 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 32 32 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 33 33 H 1.08000 * 122.53199 * 359.97438 * 17 16 15 34 34 H 1.08002 * 125.18973 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3604 2.8156 9 7 5.8569 -1.9804 3.8894 10 14 6.6264 -0.5289 1.6586 11 1 6.8311 0.8788 2.0848 12 1 7.9238 -1.2507 1.6951 13 1 6.0849 -0.5538 0.2761 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 6 2.5873 -0.5220 -3.5560 17 6 1.7559 -0.9096 -4.5931 18 6 2.3626 -1.5601 -5.5867 19 16 4.0786 -1.7115 -5.2323 20 6 3.8710 -0.8530 -3.7114 21 35 5.2540 -0.4630 -2.4820 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2057 27 1 3.9994 -1.0728 0.4260 28 1 3.8532 0.4370 1.3574 29 1 6.8076 -2.0062 4.0804 30 1 1.4496 -1.4981 -1.4100 31 1 1.0870 0.6162 -2.5525 32 1 2.7589 1.0461 -2.1182 33 1 0.6961 -0.7016 -4.5966 34 1 1.8746 -1.9364 -6.4737 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:00 Heat of formation + Delta-G solvation = 23.412073 kcal Electronic energy + Delta-G solvation = -16631.252091 eV Core-core repulsion = 13929.573741 eV Total energy + Delta-G solvation = -2701.678350 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -38.78004 -36.76042 -33.18850 -32.00035 -31.33681 -29.59573 -28.13950 -25.69494 -24.90896 -22.65035 -21.00465 -19.87456 -18.70734 -17.70591 -16.51352 -15.84056 -15.27141 -14.39730 -14.05822 -13.94884 -13.57356 -13.06673 -12.92341 -12.71622 -12.52978 -12.33958 -12.20299 -11.80581 -11.44195 -11.28943 -11.01869 -10.87080 -10.67530 -10.43797 -9.95478 -9.72386 -9.55493 -9.40516 -8.93916 -8.61097 -8.57830 -8.35959 -7.96392 -5.89494 -3.84437 0.70386 1.13849 1.72608 1.98108 2.44459 3.40917 3.47936 3.54995 4.46913 4.60262 4.83497 5.07946 5.10508 5.29153 5.32957 5.47167 5.50411 5.61737 5.71236 5.80551 5.99564 6.13780 6.20980 6.23509 6.33201 6.58733 6.78109 7.17706 7.36096 7.60478 7.71546 7.86651 8.01430 8.71744 9.17623 9.75427 11.24613 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.006320 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.835230 B = 4429.261694 C = 5844.623936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.512 4.512 7 H 0.066 0.934 8 C 0.064 3.936 9 N -0.912 5.912 10 Si 0.873 3.127 11 H -0.283 1.283 12 H -0.294 1.294 13 H -0.250 1.250 14 N -0.663 5.663 15 C 0.114 3.886 16 C -0.070 4.070 17 C -0.126 4.126 18 C -0.208 4.208 19 S 0.133 5.867 20 C -0.178 4.178 21 Br 0.039 6.961 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.000 1.000 29 H 0.259 0.741 30 H 0.338 0.662 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 3.943 -21.425 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.045 4.045 6 C -0.551 4.551 7 H 0.084 0.916 8 C -0.135 4.135 9 N -0.552 5.552 10 Si 0.702 3.298 11 H -0.210 1.210 12 H -0.220 1.220 13 H -0.175 1.175 14 N -0.293 5.293 15 C -0.017 4.017 16 C -0.085 4.085 17 C -0.158 4.158 18 C -0.345 4.345 19 S 0.396 5.604 20 C -0.376 4.376 21 Br 0.123 6.877 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.074 3.468 -21.476 22.339 hybrid contribution -1.750 0.955 -0.255 2.009 sum -6.824 4.423 -21.732 23.203 Atomic orbital electron populations 1.22524 0.98386 1.01693 1.01314 1.21767 0.91163 0.98308 0.91366 0.90969 1.21440 0.99167 0.98956 0.93139 1.19494 0.91399 0.95724 0.97855 1.21284 0.92701 1.33631 1.07450 0.91586 1.24994 0.98394 0.95150 0.94976 1.69934 1.14279 1.44395 1.26621 0.86863 0.80408 0.79266 0.83308 1.20970 1.22050 1.17451 1.60535 1.57854 1.08730 1.02213 1.20669 0.99009 0.94740 0.87305 1.18899 0.91282 1.00829 0.97517 1.20014 1.01028 1.01200 0.93525 1.25668 0.97247 1.07235 1.04342 1.84345 1.06962 1.55426 1.13661 1.26264 0.98690 1.11443 1.01167 1.96955 1.43181 1.93122 1.54429 0.92147 0.93733 0.92654 0.93074 0.92934 0.94102 0.98181 0.93113 0.84403 0.94534 0.89767 0.83951 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 9.16 37.16 0.34 -1.89 16 2 C 0.08 1.28 2.59 -67.71 -0.18 1.10 16 3 H 0.07 1.13 7.80 -51.93 -0.40 0.73 16 4 C -0.09 -1.75 4.83 -26.73 -0.13 -1.88 16 5 C -0.01 -0.18 3.93 -27.88 -0.11 -0.29 16 6 C -0.51 -15.00 9.66 -34.44 -0.33 -15.33 16 7 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.91 -29.17 13.96 55.43 0.77 -28.39 16 10 Si 0.87 22.38 27.47 -169.99 -4.67 17.71 16 11 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 13 H -0.25 -5.90 5.77 56.52 0.33 -5.57 16 14 N -0.66 -9.77 5.69 -107.99 -0.61 -10.38 16 15 C 0.11 1.46 5.23 -4.97 -0.03 1.43 16 16 C -0.07 -0.88 5.32 -106.21 -0.56 -1.44 16 17 C -0.13 -1.28 9.94 -41.21 -0.41 -1.69 16 18 C -0.21 -1.94 11.22 29.03 0.33 -1.62 16 19 S 0.13 1.49 23.34 -107.50 -2.51 -1.02 16 20 C -0.18 -2.46 6.95 29.07 0.20 -2.25 16 21 Br 0.04 0.64 32.48 -68.01 -2.21 -1.57 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 24 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.04 1.00 6.81 -51.93 -0.35 0.64 16 28 H 0.00 0.00 7.57 -51.93 -0.39 -0.40 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.34 4.66 8.46 -39.29 -0.33 4.32 16 31 H 0.04 0.40 7.36 -51.93 -0.38 0.02 16 32 H 0.08 1.17 7.79 -51.93 -0.40 0.77 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -31.79 315.43 -10.27 -42.07 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.82 Total: -1.17 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.98 Total: -22.00 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.16 Total: -38.78 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.51 Total: -1.02 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -2.21 Total: -1.57 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.79 -10.27 -42.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.479 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds