Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.52998 * 109.46837 * 185.00004 * 4 2 1 6 6 C 1.50700 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00347 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99880 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47020 * 90.00510 * 10 8 6 12 12 H 1.48504 * 109.47356 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47264 * 330.00445 * 10 8 6 14 14 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 15 15 C 1.46906 * 110.99888 * 84.99977 * 14 2 1 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 2 17 17 C 1.38455 * 122.55487 * 105.00149 * 16 15 14 18 18 C 1.33360 * 114.92845 * 180.02562 * 17 16 15 19 19 S 1.75879 * 109.61585 * 359.97438 * 18 17 16 20 20 C 1.33478 * 122.55392 * 284.71191 * 16 15 14 21 21 Br 1.89105 * 125.20620 * 0.02562 * 20 16 15 22 22 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 26 26 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 27 27 H 1.08999 * 109.47427 * 299.99661 * 5 4 2 28 28 H 1.09002 * 109.47632 * 60.00151 * 5 4 2 29 29 H 0.97000 * 119.99918 * 179.97438 * 9 8 6 30 30 H 1.00902 * 111.00533 * 321.04383 * 14 2 1 31 31 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 32 32 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 33 33 H 1.08000 * 122.53199 * 359.97438 * 17 16 15 34 34 H 1.08002 * 125.18973 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3604 2.8156 9 7 5.8569 -1.9804 3.8894 10 14 6.6264 -0.5289 1.6586 11 1 6.8311 0.8788 2.0848 12 1 7.9238 -1.2507 1.6951 13 1 6.0849 -0.5538 0.2761 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 6 2.5873 -0.5220 -3.5560 17 6 1.7559 -0.9096 -4.5931 18 6 2.3626 -1.5601 -5.5867 19 16 4.0786 -1.7115 -5.2323 20 6 3.8710 -0.8530 -3.7114 21 35 5.2540 -0.4630 -2.4820 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2057 27 1 3.9994 -1.0728 0.4260 28 1 3.8532 0.4370 1.3574 29 1 6.8076 -2.0062 4.0804 30 1 1.4496 -1.4981 -1.4100 31 1 1.0870 0.6162 -2.5525 32 1 2.7589 1.0461 -2.1182 33 1 0.6961 -0.7016 -4.5966 34 1 1.8746 -1.9364 -6.4737 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = 3.453879 kcal Electronic energy + Delta-G solvation = -16632.117544 eV Core-core repulsion = 13929.573741 eV Total energy + Delta-G solvation = -2702.543802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.71822 -37.94911 -35.17908 -33.35647 -32.65759 -31.08564 -29.11287 -27.13338 -26.29477 -23.53120 -22.69869 -21.38611 -19.63050 -18.76314 -18.54540 -16.83806 -16.43880 -16.29407 -15.31319 -15.07515 -14.72922 -14.61232 -14.06604 -14.02818 -13.90741 -13.59204 -13.29095 -13.11341 -12.94737 -12.81364 -12.38120 -12.04814 -11.84404 -11.74008 -11.61283 -11.42201 -11.27832 -11.04405 -11.01072 -10.67175 -9.52831 -9.44142 -9.06370 -8.24390 -6.24431 -0.15305 0.23002 0.84796 1.07368 1.33863 1.37275 1.53476 1.62187 2.40750 3.13361 3.43230 3.99800 4.07888 4.19821 4.30101 4.39284 4.51400 4.62024 4.75774 4.80551 4.98901 5.02464 5.06758 5.09680 5.29279 5.33082 5.38776 5.45471 5.67712 5.76319 5.89645 6.28435 6.39271 6.65776 6.85192 7.39579 8.92832 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.006320 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.835230 B = 4429.261694 C = 5844.623936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 H 0.070 0.930 4 C -0.085 4.085 5 C 0.002 3.998 6 C -0.521 4.521 7 H 0.026 0.974 8 C 0.004 3.996 9 N -0.960 5.960 10 Si 0.939 3.061 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.225 1.225 14 N -0.680 5.680 15 C 0.118 3.882 16 C -0.066 4.066 17 C -0.134 4.134 18 C -0.187 4.187 19 S 0.131 5.869 20 C -0.209 4.209 21 Br 0.000 7.000 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.042 0.958 28 H -0.001 1.001 29 H 0.261 0.739 30 H 0.344 0.656 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.171 0.829 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 4.749 -24.588 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.035 4.035 6 C -0.559 4.559 7 H 0.044 0.956 8 C -0.191 4.191 9 N -0.602 5.602 10 Si 0.764 3.236 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.148 1.148 14 N -0.312 5.312 15 C -0.013 4.013 16 C -0.083 4.083 17 C -0.165 4.165 18 C -0.323 4.323 19 S 0.394 5.606 20 C -0.406 4.406 21 Br 0.084 6.916 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.018 0.982 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.188 0.812 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.783 4.278 -24.660 25.931 hybrid contribution -1.321 0.627 0.720 1.630 sum -8.104 4.905 -23.940 25.746 Atomic orbital electron populations 1.22390 0.95577 1.02346 1.02540 1.21487 0.93243 0.97187 0.89556 0.91175 1.21335 0.96126 0.99112 0.95721 1.19375 0.94487 0.94590 0.95084 1.21706 0.92312 1.33313 1.08596 0.95573 1.25921 1.00598 0.95936 0.96671 1.70091 1.14842 1.46373 1.28866 0.85815 0.77505 0.78009 0.82287 1.20303 1.22163 1.14769 1.60381 1.58493 1.09516 1.02762 1.20634 1.00067 0.93967 0.86643 1.19105 0.91152 1.00093 0.97910 1.20222 1.02137 1.01343 0.92783 1.26107 0.95735 1.05519 1.04964 1.84366 1.08990 1.54926 1.12287 1.26240 0.98304 1.14035 1.02024 1.96874 1.44974 1.93503 1.56283 0.92089 0.91318 0.92305 0.93722 0.93897 0.94003 0.98221 0.93003 0.83733 0.91876 0.91212 0.81150 0.78150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.16 71.98 0.66 -3.01 16 2 C 0.09 2.72 2.59 44.92 0.12 2.84 16 3 H 0.07 2.06 7.80 -2.39 -0.02 2.04 16 4 C -0.08 -3.31 4.83 30.59 0.15 -3.17 16 5 C 0.00 0.10 3.93 29.85 0.12 0.22 16 6 C -0.52 -31.38 9.66 25.60 0.25 -31.14 16 7 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 8 C 0.00 0.25 5.47 84.65 0.46 0.71 16 9 N -0.96 -63.26 13.96 21.45 0.30 -62.96 16 10 Si 0.94 46.94 27.47 68.60 1.88 48.82 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 13 H -0.22 -10.19 5.77 99.48 0.57 -9.62 16 14 N -0.68 -18.58 5.69 -495.57 -2.82 -21.40 16 15 C 0.12 2.68 5.23 85.56 0.45 3.13 16 16 C -0.07 -1.48 5.32 -20.89 -0.11 -1.59 16 17 C -0.13 -2.15 9.94 21.22 0.21 -1.94 16 18 C -0.19 -2.70 11.22 66.72 0.75 -1.95 16 19 S 0.13 2.65 23.34 -56.49 -1.32 1.33 16 20 C -0.21 -5.40 6.95 66.74 0.46 -4.94 16 21 Br 0.00 -0.01 32.48 -20.37 -0.66 -0.67 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.19 7.45 -2.39 -0.02 1.17 16 24 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 2.02 6.81 -2.39 -0.02 2.00 16 28 H 0.00 -0.03 7.57 -2.39 -0.02 -0.05 16 29 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 30 H 0.34 8.61 8.46 -89.69 -0.76 7.85 16 31 H 0.06 1.11 7.36 -2.39 -0.02 1.09 16 32 H 0.07 1.81 7.79 -2.39 -0.02 1.79 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -71.08 315.43 1.10 -69.98 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.20 Total: 5.74 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.51 Total: -40.84 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.52 Total: -84.36 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.88 Total: 48.82 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.32 Total: 1.33 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.66 Total: -0.67 kcal Total: -71.08 1.10 -69.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.437 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds