Wall clock time and date at job start Tue Mar 31 2020 10:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00036 * 2 1 4 4 C 1.46897 * 110.99651 * 123.95686 * 2 1 3 5 5 C 1.53004 * 109.46823 * 164.84272 * 4 2 1 6 6 H 1.08997 * 109.46956 * 63.51552 * 5 4 2 7 7 N 1.46898 * 109.47081 * 303.51462 * 5 4 2 8 8 C 1.46900 * 110.99958 * 157.70636 * 7 5 4 9 9 C 1.53008 * 109.47093 * 273.61522 * 8 7 5 10 10 C 1.53003 * 109.47148 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47066 * 59.99942 * 10 9 8 12 12 C 1.50691 * 109.46988 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99989 * 120.00370 * 12 11 10 14 14 C 1.37880 * 120.00462 * 299.99976 * 12 11 10 15 15 N 1.31521 * 119.99565 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00339 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47432 * 60.00094 * 16 14 12 18 18 H 1.48501 * 109.47048 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46951 * 299.99522 * 16 14 12 20 20 C 1.53001 * 109.46934 * 300.00148 * 11 10 9 21 21 C 1.52993 * 109.47211 * 153.61603 * 8 7 5 22 22 C 1.50699 * 109.47134 * 183.51336 * 5 4 2 23 23 C 1.38241 * 120.00093 * 260.00307 * 22 5 4 24 24 C 1.38234 * 119.99810 * 180.02562 * 23 22 5 25 25 C 1.38238 * 120.00278 * 359.94650 * 24 23 22 26 26 C 1.38236 * 119.99522 * 0.02562 * 25 24 23 27 27 C 1.38227 * 120.00568 * 0.06452 * 26 25 24 28 28 H 1.09005 * 109.47365 * 296.04431 * 1 2 3 29 29 H 1.09002 * 109.47236 * 56.04090 * 1 2 3 30 30 H 1.09000 * 109.47876 * 176.04503 * 1 2 3 31 31 H 1.08997 * 109.46822 * 183.95448 * 3 2 1 32 32 H 1.08998 * 109.47242 * 303.95545 * 3 2 1 33 33 H 1.08999 * 109.46832 * 63.95611 * 3 2 1 34 34 H 1.09004 * 109.47362 * 44.84707 * 4 2 1 35 35 H 1.09004 * 109.47211 * 284.84087 * 4 2 1 36 36 H 1.00897 * 110.99966 * 281.65611 * 7 5 4 37 37 H 1.09000 * 109.47092 * 33.61368 * 8 7 5 38 38 H 1.09000 * 109.47026 * 299.99887 * 9 8 7 39 39 H 1.08999 * 109.46921 * 59.99672 * 9 8 7 40 40 H 1.09000 * 109.47195 * 299.99943 * 10 9 8 41 41 H 1.08999 * 109.46951 * 179.97438 * 10 9 8 42 42 H 1.09000 * 109.47113 * 59.99951 * 11 10 9 43 43 H 0.97000 * 119.99856 * 179.97438 * 15 14 12 44 44 H 1.08997 * 109.46715 * 299.99456 * 20 11 10 45 45 H 1.08999 * 109.46670 * 180.02562 * 20 11 10 46 46 H 1.09006 * 109.47298 * 299.99512 * 21 8 7 47 47 H 1.09000 * 109.47284 * 59.99883 * 21 8 7 48 48 H 1.07996 * 120.00056 * 359.97352 * 23 22 5 49 49 H 1.08004 * 119.99675 * 179.97438 * 24 23 22 50 50 H 1.07996 * 119.99942 * 179.72629 * 25 24 23 51 51 H 1.08008 * 119.99288 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00477 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4780 -1.0661 0.9079 6 1 4.0374 -0.1312 0.8771 7 7 3.6419 -1.7771 -0.3670 8 6 5.0087 -1.6239 -0.8833 9 6 5.1029 -0.3352 -1.7026 10 6 6.5266 -0.1753 -2.2398 11 6 6.8736 -1.3712 -3.1287 12 6 8.2756 -1.2134 -3.6582 13 1 9.0249 -1.9578 -3.4329 14 6 8.6018 -0.1187 -4.4305 15 7 7.6894 0.7880 -4.7045 16 14 10.3394 0.0765 -5.0875 17 1 10.6757 -1.0842 -5.9504 18 1 10.4305 1.3276 -5.8822 19 1 11.2937 0.1418 -3.9514 20 6 6.7794 -2.6599 -2.3093 21 6 5.3551 -2.8199 -1.7723 22 6 3.9967 -1.9250 2.0324 23 6 4.7129 -1.3515 3.0664 24 6 5.1891 -2.1394 4.0975 25 6 4.9482 -3.5007 4.0953 26 6 4.2315 -4.0740 3.0616 27 6 3.7569 -3.2864 2.0295 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3635 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.4453 -1.7025 1.2307 35 1 1.8798 -0.1842 2.0520 36 1 3.3987 -2.7517 -0.2715 37 1 5.7089 -1.5763 -0.0493 38 1 4.4027 -0.3828 -2.5366 39 1 4.8561 0.5169 -1.0692 40 1 7.2265 -0.1274 -1.4055 41 1 6.5936 0.7426 -2.8238 42 1 6.1738 -1.4191 -3.9629 43 1 7.9189 1.5583 -5.2475 44 1 7.4793 -2.6121 -1.4752 45 1 7.0270 -3.5119 -2.9425 46 1 5.2880 -3.7381 -1.1886 47 1 4.6549 -2.8676 -2.6063 48 1 4.9011 -0.2881 3.0682 49 1 5.7490 -1.6914 4.9052 50 1 5.3241 -4.1169 4.8986 51 1 4.0437 -5.1376 3.0596 52 1 3.1973 -3.7344 1.2216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:09 Heat of formation + Delta-G solvation = 1.497901 kcal Electronic energy + Delta-G solvation = -27602.907568 eV Core-core repulsion = 24179.604559 eV Total energy + Delta-G solvation = -3423.303010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87850 -39.32878 -38.29356 -36.19681 -34.44967 -32.30798 -31.79151 -31.32727 -30.02696 -28.70324 -28.37479 -26.10525 -24.97261 -23.53665 -23.19777 -22.59722 -22.02773 -20.92495 -20.30472 -18.37009 -18.06571 -16.94618 -16.59532 -16.52041 -16.15267 -15.73781 -15.62746 -15.44462 -15.39362 -14.82986 -14.63574 -14.61098 -14.22682 -14.07978 -13.78801 -13.64398 -13.48723 -13.13955 -13.04408 -12.88797 -12.74933 -12.58352 -12.48782 -12.46325 -12.18749 -12.14539 -12.01041 -11.94241 -11.77952 -11.65745 -11.58683 -11.12559 -10.71063 -10.46640 -10.32486 -9.81968 -9.65520 -9.14081 -9.04533 -8.03703 -6.18107 0.43730 0.50693 1.41527 1.42788 1.50400 2.45337 2.85101 3.10578 3.21207 3.27608 3.84306 3.96216 4.05040 4.09876 4.15994 4.24610 4.29012 4.30241 4.43520 4.47873 4.51747 4.59320 4.63751 4.66665 4.72770 4.74902 4.76738 4.81511 4.87488 4.93945 4.95045 5.01616 5.07718 5.08918 5.10557 5.13815 5.16819 5.23859 5.36214 5.47254 5.56096 5.57842 5.62706 5.63269 5.67804 5.76580 6.08349 6.11851 6.17170 6.23290 6.26747 6.35335 6.45574 6.69049 6.94721 7.49419 8.99736 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003733 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.846538 B = 7499.345156 C = 8858.830261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.029 3.971 4 C 0.083 3.917 5 C 0.137 3.863 6 H 0.068 0.932 7 N -0.653 5.653 8 C 0.111 3.889 9 C -0.081 4.081 10 C -0.099 4.099 11 C 0.047 3.953 12 C -0.537 4.537 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.098 4.098 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.341 0.659 37 H 0.026 0.974 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.018 0.982 41 H 0.056 0.944 42 H -0.008 1.008 43 H 0.259 0.741 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.120 0.880 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.142 0.858 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.094 -5.730 18.303 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.264 5.264 3 C -0.120 4.120 4 C -0.046 4.046 5 C 0.026 3.974 6 H 0.086 0.914 7 N -0.284 5.284 8 C 0.001 3.999 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.029 3.971 12 C -0.575 4.575 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.555 5.555 16 Si 0.776 3.224 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.142 4.142 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.162 0.838 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.010 0.990 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.138 0.862 49 H 0.155 0.845 50 H 0.159 0.841 51 H 0.159 0.841 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.247 -5.277 17.363 22.468 hybrid contribution 1.399 0.411 0.598 1.576 sum -11.848 -4.866 17.961 22.060 Atomic orbital electron populations 1.22381 0.86640 1.02491 1.00416 1.61752 1.07928 1.13446 1.43261 1.22351 1.00436 0.88935 1.00245 1.21982 0.93728 0.98177 0.90698 1.20510 0.95918 0.95587 0.85345 0.91416 1.60574 1.23905 1.17541 1.26374 1.21215 0.88393 0.95217 0.95029 1.21341 0.96188 0.96302 0.98059 1.21392 0.93844 1.01497 0.97008 1.18597 0.94201 0.91648 0.92666 1.21616 0.97372 1.06997 1.31564 0.93299 1.25727 1.00640 0.95717 0.96469 1.70033 1.34740 1.11805 1.38887 0.85741 0.80792 0.77403 0.78488 1.19689 1.20915 1.19782 1.21450 0.95640 0.98111 0.98403 1.21608 0.96671 0.96972 0.99106 1.20756 0.98953 0.95307 0.97046 1.21248 0.98539 1.00313 0.94657 1.21419 0.99775 0.94511 0.98712 1.21475 0.98781 0.95196 0.99305 1.21422 0.97755 1.00774 0.94018 1.21119 1.00626 0.93135 0.99349 0.95546 0.91390 0.90990 0.92716 0.91557 0.95330 0.90314 0.94450 0.83829 0.95630 0.93864 0.93853 0.96268 0.92594 0.99015 0.93185 0.93969 0.93511 0.91179 0.92297 0.86159 0.84542 0.84076 0.84067 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.54 127.69 1.22 1.75 16 2 N -0.54 -12.69 4.74 -948.83 -4.50 -17.19 16 3 C 0.03 0.67 9.37 127.69 1.20 1.87 16 4 C 0.08 1.78 4.63 86.31 0.40 2.18 16 5 C 0.14 3.37 1.98 44.17 0.09 3.46 16 6 H 0.07 1.91 5.82 -2.39 -0.01 1.90 16 7 N -0.65 -18.07 5.79 -473.31 -2.74 -20.81 16 8 C 0.11 3.77 2.30 44.92 0.10 3.88 16 9 C -0.08 -3.29 5.43 30.60 0.17 -3.12 16 10 C -0.10 -4.90 4.98 30.60 0.15 -4.74 16 11 C 0.05 2.46 2.10 -11.54 -0.02 2.44 16 12 C -0.54 -30.72 8.56 25.60 0.22 -30.50 16 13 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.92 -54.48 11.32 21.45 0.24 -54.24 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 C -0.10 -4.17 5.15 30.61 0.16 -4.01 16 21 C -0.11 -3.67 5.18 30.61 0.16 -3.51 16 22 C -0.12 -2.69 4.47 -19.86 -0.09 -2.78 16 23 C -0.13 -2.86 9.67 22.27 0.22 -2.64 16 24 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 25 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 26 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 27 C -0.12 -2.52 9.15 22.27 0.20 -2.31 16 28 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.07 1.23 8.12 -2.39 -0.02 1.22 16 30 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 31 H 0.05 1.47 5.98 -2.39 -0.01 1.46 16 32 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 33 H 0.03 0.58 8.11 -2.39 -0.02 0.56 16 34 H 0.08 1.57 7.97 -2.38 -0.02 1.55 16 35 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 36 H 0.34 8.40 6.02 -89.70 -0.54 7.86 16 37 H 0.03 0.93 7.52 -2.39 -0.02 0.91 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.67 6.73 -2.39 -0.02 1.66 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.12 2.52 8.04 -2.91 -0.02 2.50 16 49 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 50 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 51 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 52 H 0.13 2.33 6.50 -2.91 -0.02 2.31 16 Total: -1.00 -63.70 397.13 0.65 -63.05 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.33 Total: 25.45 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 5.29 Total: -43.06 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -6.99 Total: -92.23 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.70 0.65 -63.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.551 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds