Wall clock time and date at job start Tue Mar 31 2020 10:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99576 * 2 1 4 4 C 1.53002 * 109.47205 * 269.99784 * 3 2 1 5 5 C 1.52996 * 109.47329 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47200 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 C 1.39669 * 120.00067 * 179.97438 * 2 1 3 22 22 C 1.38917 * 120.07476 * 179.72221 * 21 2 1 23 23 C 1.38104 * 119.92466 * 179.76850 * 22 21 2 24 24 C 1.38280 * 120.07393 * 0.51268 * 23 22 21 25 25 C 1.38290 * 120.15046 * 359.73894 * 24 23 22 26 26 C 1.38092 * 120.07515 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46876 * 90.00647 * 1 2 3 28 28 H 1.09006 * 109.46634 * 210.00165 * 1 2 3 29 29 H 1.08998 * 109.47187 * 329.99599 * 1 2 3 30 30 H 1.09003 * 109.46882 * 150.00424 * 3 2 1 31 31 H 1.08996 * 109.47500 * 29.99722 * 3 2 1 32 32 H 1.09009 * 109.46911 * 60.00113 * 4 3 2 33 33 H 1.09002 * 109.47057 * 300.00713 * 4 3 2 34 34 H 1.08995 * 109.46990 * 60.00195 * 5 4 3 35 35 H 1.09002 * 109.47484 * 300.00269 * 5 4 3 36 36 H 1.00896 * 111.00418 * 303.95553 * 6 5 4 37 37 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 38 38 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 39 39 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 40 40 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 41 41 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 42 42 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 43 43 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 44 44 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 45 45 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 46 46 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 47 47 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 48 48 H 1.07997 * 120.03495 * 0.02562 * 22 21 2 49 49 H 1.07997 * 119.96259 * 180.24763 * 23 22 21 50 50 H 1.08002 * 119.92463 * 179.72331 * 24 23 22 51 51 H 1.08000 * 119.95766 * 179.97438 * 25 24 23 52 52 H 1.08010 * 120.03789 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4622 3.4595 -2.8275 7 6 4.1964 4.7314 -2.8668 8 6 3.9053 5.4478 -4.1870 9 6 4.6705 6.7720 -4.2281 10 6 6.1714 6.4975 -4.1170 11 6 6.6097 5.6282 -5.2674 12 1 5.8895 5.3037 -6.0039 13 6 7.9299 5.2464 -5.3791 14 7 8.8077 5.6453 -4.4846 15 14 8.4732 4.1695 -6.8054 16 1 8.8835 5.0280 -7.9455 17 1 9.6208 3.3281 -6.3813 18 1 7.3470 3.2964 -7.2234 19 6 6.4625 5.7811 -2.7967 20 6 5.6975 4.4573 -2.7553 21 6 2.1634 -1.2096 0.0005 22 6 3.5526 -1.2114 -0.0053 23 6 4.2400 -2.4092 0.0001 24 6 3.5471 -3.6058 0.0006 25 6 2.1642 -3.6076 0.0011 26 6 1.4705 -2.4136 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.5000 1.8407 -1.9564 33 1 3.0416 0.9508 -1.9563 34 1 4.1703 2.9045 -0.9289 35 1 2.6292 3.7951 -0.9286 36 1 3.9506 2.7437 -3.3443 37 1 3.8790 5.3599 -2.0347 38 1 2.8359 5.6429 -4.2663 39 1 4.2227 4.8192 -5.0191 40 1 4.3535 7.4007 -3.3960 41 1 4.4634 7.2822 -5.1689 42 1 6.7165 7.4409 -4.1458 43 1 9.7363 5.3763 -4.5631 44 1 7.5319 5.5859 -2.7173 45 1 6.1456 6.4097 -1.9646 46 1 5.9048 3.9469 -1.8148 47 1 6.0148 3.8288 -3.5874 48 1 4.0943 -0.2771 -0.0098 49 1 5.3200 -2.4113 -0.0004 50 1 4.0871 -4.5411 0.0003 51 1 1.6261 -4.5441 0.0011 52 1 0.3904 -2.4157 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:18 Heat of formation + Delta-G solvation = 11.674635 kcal Electronic energy + Delta-G solvation = -26349.754682 eV Core-core repulsion = 22926.892969 eV Total energy + Delta-G solvation = -3422.861713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.78897 -38.29149 -36.86589 -35.13231 -32.67903 -31.56591 -30.89009 -29.79935 -29.48882 -28.17268 -26.33157 -24.77330 -23.87754 -22.33306 -21.72072 -21.31506 -20.81267 -20.37063 -18.68495 -17.89221 -16.07429 -15.88535 -15.66978 -15.31001 -15.14963 -14.77365 -14.46522 -14.38171 -14.25031 -13.73342 -13.63755 -13.30126 -13.15723 -12.76018 -12.63575 -12.49340 -12.33665 -12.22743 -11.70017 -11.64441 -11.51428 -11.32953 -11.07263 -10.99886 -10.87873 -10.86165 -10.69739 -10.55345 -10.29152 -10.04949 -9.99262 -9.63737 -9.14007 -9.03811 -8.96247 -8.66403 -8.28110 -7.81142 -7.44394 -5.94288 -3.98240 1.32486 1.49647 2.90485 3.31295 3.38693 3.41622 3.78684 4.45616 4.47777 4.64400 4.68759 4.87054 4.97627 5.05670 5.13340 5.21610 5.28229 5.35705 5.35764 5.36296 5.42716 5.48683 5.55034 5.61646 5.63688 5.77955 5.86318 5.89024 6.04574 6.12404 6.16435 6.22210 6.35655 6.38261 6.48620 6.51369 6.53450 6.56517 6.73742 6.78957 6.80836 6.90910 7.08110 7.14686 7.22090 7.34155 7.36078 7.52269 7.63505 7.76417 7.82692 7.97677 8.18525 8.52515 9.04583 9.64779 11.11610 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.002657 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.852906 B =10536.286807 C =11766.300537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.631 5.631 3 C 0.125 3.875 4 C -0.135 4.135 5 C 0.062 3.938 6 N -0.689 5.689 7 C 0.094 3.906 8 C -0.092 4.092 9 C -0.107 4.107 10 C 0.043 3.957 11 C -0.498 4.498 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.883 3.117 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.104 4.104 20 C -0.125 4.125 21 C 0.218 3.782 22 C -0.196 4.196 23 C -0.072 4.072 24 C -0.184 4.184 25 C -0.075 4.075 26 C -0.202 4.202 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.339 0.661 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.023 0.977 43 H 0.258 0.742 44 H 0.089 0.911 45 H 0.012 0.988 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -13.580 11.665 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.342 5.342 3 C 0.001 3.999 4 C -0.174 4.174 5 C -0.068 4.068 6 N -0.319 5.319 7 C -0.015 4.015 8 C -0.130 4.130 9 C -0.146 4.146 10 C 0.024 3.976 11 C -0.537 4.537 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.712 3.288 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.143 4.143 20 C -0.164 4.164 21 C 0.116 3.884 22 C -0.218 4.218 23 C -0.091 4.091 24 C -0.204 4.204 25 C -0.094 4.094 26 C -0.224 4.224 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.133 0.867 51 H 0.135 0.865 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.373 -13.123 11.648 23.329 hybrid contribution 1.336 -0.893 -0.544 1.696 sum -14.037 -14.016 11.104 22.733 Atomic orbital electron populations 1.21628 0.79724 1.02368 1.01229 1.46477 1.04822 1.02970 1.79887 1.21451 0.97130 0.84427 0.96904 1.22007 1.01578 0.97059 0.96785 1.21830 0.98089 0.95749 0.91156 1.60684 1.52946 1.06262 1.11988 1.21578 0.92229 0.89431 0.98268 1.21339 0.97549 0.97105 0.96968 1.21561 0.98796 0.95364 0.98837 1.18692 0.89463 0.95933 0.93473 1.21164 0.93329 1.30411 1.08751 0.92666 1.24948 0.96877 0.96375 0.95873 1.69877 1.02630 1.45898 1.34779 0.86730 0.78290 0.80728 0.83092 1.20842 1.21426 1.19959 1.21442 1.02150 0.93913 0.96760 1.22000 0.94764 1.00163 0.99499 1.17858 0.91274 0.85710 0.93547 1.20762 0.92213 0.98844 1.09983 1.20931 0.99565 0.92016 0.96567 1.20898 0.94277 0.97814 1.07382 1.20862 0.94255 0.97082 0.97168 1.20666 0.99495 0.91223 1.11063 0.93370 0.91553 0.91539 0.90718 0.90749 0.91089 0.91785 0.95371 0.91548 0.84324 0.92216 0.94058 0.91319 0.94989 0.93492 0.95890 0.93235 0.89268 0.96945 0.95458 0.90998 0.85950 0.86237 0.86665 0.86459 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.23 59.85 0.61 1.31 16 2 N -0.63 -6.15 3.01 -179.61 -0.54 -6.69 16 3 C 0.12 1.17 5.20 -4.04 -0.02 1.15 16 4 C -0.14 -1.48 5.80 -26.73 -0.15 -1.64 16 5 C 0.06 0.79 5.48 -3.83 -0.02 0.77 16 6 N -0.69 -10.70 6.25 -106.73 -0.67 -11.36 16 7 C 0.09 1.68 2.47 -67.71 -0.17 1.52 16 8 C -0.09 -1.76 5.30 -26.73 -0.14 -1.90 16 9 C -0.11 -2.23 5.41 -26.74 -0.14 -2.38 16 10 C 0.04 1.05 2.58 -91.77 -0.24 0.81 16 11 C -0.50 -13.17 6.61 -34.44 -0.23 -13.40 16 12 H 0.06 1.46 6.71 -52.49 -0.35 1.11 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -25.20 11.33 55.43 0.63 -24.57 16 15 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.10 -2.41 5.23 -26.75 -0.14 -2.55 16 20 C -0.13 -2.56 4.95 -26.76 -0.13 -2.69 16 21 C 0.22 2.39 6.55 -83.79 -0.55 1.84 16 22 C -0.20 -2.19 9.20 -39.38 -0.36 -2.55 16 23 C -0.07 -0.76 10.04 -39.62 -0.40 -1.15 16 24 C -0.18 -1.80 10.04 -39.55 -0.40 -2.20 16 25 C -0.07 -0.71 10.04 -39.62 -0.40 -1.11 16 26 C -0.20 -2.02 9.21 -39.38 -0.36 -2.39 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 29 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 30 H 0.07 0.71 6.21 -51.93 -0.32 0.39 16 31 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 35 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.34 5.38 8.47 -39.29 -0.33 5.05 16 37 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 2.34 6.08 -51.93 -0.32 2.02 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 47 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 48 H 0.12 1.32 6.15 -52.49 -0.32 1.00 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 52 H 0.12 0.99 6.14 -52.48 -0.32 0.67 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -28.28 395.03 -12.19 -40.47 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -9.21 Total: 5.13 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.34 Total: -25.04 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.58 Total: -42.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.28 -12.19 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.145 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds