Wall clock time and date at job start Tue Mar 31 2020 10:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99576 * 2 1 4 4 C 1.53002 * 109.47205 * 269.99784 * 3 2 1 5 5 C 1.52996 * 109.47329 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47200 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 C 1.39669 * 120.00067 * 179.97438 * 2 1 3 22 22 C 1.38917 * 120.07476 * 179.72221 * 21 2 1 23 23 C 1.38104 * 119.92466 * 179.76850 * 22 21 2 24 24 C 1.38280 * 120.07393 * 0.51268 * 23 22 21 25 25 C 1.38290 * 120.15046 * 359.73894 * 24 23 22 26 26 C 1.38092 * 120.07515 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46876 * 90.00647 * 1 2 3 28 28 H 1.09006 * 109.46634 * 210.00165 * 1 2 3 29 29 H 1.08998 * 109.47187 * 329.99599 * 1 2 3 30 30 H 1.09003 * 109.46882 * 150.00424 * 3 2 1 31 31 H 1.08996 * 109.47500 * 29.99722 * 3 2 1 32 32 H 1.09009 * 109.46911 * 60.00113 * 4 3 2 33 33 H 1.09002 * 109.47057 * 300.00713 * 4 3 2 34 34 H 1.08995 * 109.46990 * 60.00195 * 5 4 3 35 35 H 1.09002 * 109.47484 * 300.00269 * 5 4 3 36 36 H 1.00896 * 111.00418 * 303.95553 * 6 5 4 37 37 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 38 38 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 39 39 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 40 40 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 41 41 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 42 42 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 43 43 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 44 44 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 45 45 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 46 46 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 47 47 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 48 48 H 1.07997 * 120.03495 * 0.02562 * 22 21 2 49 49 H 1.07997 * 119.96259 * 180.24763 * 23 22 21 50 50 H 1.08002 * 119.92463 * 179.72331 * 24 23 22 51 51 H 1.08000 * 119.95766 * 179.97438 * 25 24 23 52 52 H 1.08010 * 120.03789 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4622 3.4595 -2.8275 7 6 4.1964 4.7314 -2.8668 8 6 3.9053 5.4478 -4.1870 9 6 4.6705 6.7720 -4.2281 10 6 6.1714 6.4975 -4.1170 11 6 6.6097 5.6282 -5.2674 12 1 5.8895 5.3037 -6.0039 13 6 7.9299 5.2464 -5.3791 14 7 8.8077 5.6453 -4.4846 15 14 8.4732 4.1695 -6.8054 16 1 8.8835 5.0280 -7.9455 17 1 9.6208 3.3281 -6.3813 18 1 7.3470 3.2964 -7.2234 19 6 6.4625 5.7811 -2.7967 20 6 5.6975 4.4573 -2.7553 21 6 2.1634 -1.2096 0.0005 22 6 3.5526 -1.2114 -0.0053 23 6 4.2400 -2.4092 0.0001 24 6 3.5471 -3.6058 0.0006 25 6 2.1642 -3.6076 0.0011 26 6 1.4705 -2.4136 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.5000 1.8407 -1.9564 33 1 3.0416 0.9508 -1.9563 34 1 4.1703 2.9045 -0.9289 35 1 2.6292 3.7951 -0.9286 36 1 3.9506 2.7437 -3.3443 37 1 3.8790 5.3599 -2.0347 38 1 2.8359 5.6429 -4.2663 39 1 4.2227 4.8192 -5.0191 40 1 4.3535 7.4007 -3.3960 41 1 4.4634 7.2822 -5.1689 42 1 6.7165 7.4409 -4.1458 43 1 9.7363 5.3763 -4.5631 44 1 7.5319 5.5859 -2.7173 45 1 6.1456 6.4097 -1.9646 46 1 5.9048 3.9469 -1.8148 47 1 6.0148 3.8288 -3.5874 48 1 4.0943 -0.2771 -0.0098 49 1 5.3200 -2.4113 -0.0004 50 1 4.0871 -4.5411 0.0003 51 1 1.6261 -4.5441 0.0011 52 1 0.3904 -2.4157 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:17 Heat of formation + Delta-G solvation = -1.343720 kcal Electronic energy + Delta-G solvation = -26350.319200 eV Core-core repulsion = 22926.892969 eV Total energy + Delta-G solvation = -3423.426232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52842 -39.85163 -37.73424 -36.41570 -34.32470 -32.85139 -31.74719 -31.22009 -30.59206 -29.48793 -27.40622 -26.45610 -24.90492 -23.25306 -23.04429 -22.50545 -22.18125 -21.32768 -20.48582 -18.62457 -17.83321 -16.85578 -16.74251 -16.48182 -16.35988 -16.16270 -15.62707 -15.40175 -15.23313 -14.89708 -14.82891 -14.57280 -14.43964 -14.19711 -13.66477 -13.57685 -13.44667 -13.19724 -12.98514 -12.85395 -12.82712 -12.64922 -12.59389 -12.42321 -12.38051 -12.16828 -12.14673 -11.77568 -11.73560 -11.54239 -11.43244 -10.96770 -10.72819 -10.69406 -10.58533 -10.31477 -9.79603 -9.18032 -8.17718 -8.03197 -6.12834 0.56761 0.73960 1.39133 1.41577 1.49871 2.21117 2.45112 3.02595 3.24865 3.29618 3.89108 3.96994 4.04850 4.14502 4.19786 4.28876 4.31951 4.34487 4.39322 4.49371 4.53147 4.63941 4.65245 4.67956 4.72195 4.74937 4.78859 4.79295 4.88819 4.90235 4.90672 4.94862 5.00866 5.10371 5.16795 5.22250 5.27930 5.29638 5.42327 5.46564 5.56734 5.62136 5.64926 5.65404 5.74221 5.78524 5.96649 6.02182 6.23084 6.25134 6.40020 6.45997 6.52152 6.60970 6.97404 7.52865 9.01439 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.002657 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.852906 B =10536.286807 C =11766.300537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.635 5.635 3 C 0.128 3.872 4 C -0.120 4.120 5 C 0.064 3.936 6 N -0.687 5.687 7 C 0.106 3.894 8 C -0.085 4.085 9 C -0.102 4.102 10 C 0.037 3.963 11 C -0.502 4.502 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.940 3.060 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.100 4.100 20 C -0.114 4.114 21 C 0.203 3.797 22 C -0.216 4.216 23 C -0.086 4.086 24 C -0.194 4.194 25 C -0.079 4.079 26 C -0.211 4.211 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.336 0.664 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.045 0.955 42 H -0.013 1.013 43 H 0.256 0.744 44 H 0.054 0.946 45 H 0.026 0.974 46 H 0.039 0.961 47 H 0.044 0.956 48 H 0.118 0.882 49 H 0.128 0.872 50 H 0.132 0.868 51 H 0.141 0.859 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.013 -14.709 12.264 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.346 5.346 3 C 0.004 3.996 4 C -0.159 4.159 5 C -0.066 4.066 6 N -0.316 5.316 7 C -0.004 4.004 8 C -0.123 4.123 9 C -0.140 4.140 10 C 0.018 3.982 11 C -0.540 4.540 12 H 0.070 0.930 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.767 3.233 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.139 4.139 20 C -0.153 4.153 21 C 0.101 3.899 22 C -0.238 4.238 23 C -0.104 4.104 24 C -0.214 4.214 25 C -0.098 4.098 26 C -0.233 4.233 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.005 0.995 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.136 0.864 49 H 0.146 0.854 50 H 0.150 0.850 51 H 0.158 0.842 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.598 -14.255 12.246 25.746 hybrid contribution 2.018 -0.530 -0.714 2.205 sum -15.580 -14.785 11.532 24.379 Atomic orbital electron populations 1.21772 0.78376 1.03619 1.01510 1.46603 1.05700 1.02565 1.79683 1.21411 0.97539 0.84914 0.95753 1.21841 1.00656 0.95589 0.97803 1.21899 0.98329 0.96898 0.89477 1.60681 1.51844 1.05359 1.13722 1.21378 0.90351 0.90736 0.97921 1.21259 0.98376 0.95797 0.96902 1.21470 0.96181 0.96755 0.99611 1.18702 0.91756 0.94024 0.93676 1.21406 0.93326 1.30178 1.09133 0.92951 1.25623 0.97169 0.97698 0.98025 1.70021 1.02702 1.47081 1.36272 0.85829 0.77883 0.79245 0.80385 1.20595 1.21409 1.19264 1.21305 1.00493 0.95559 0.96540 1.21859 0.96468 0.98040 0.98940 1.18071 0.91390 0.86600 0.93821 1.20873 0.92759 0.99020 1.11150 1.21159 1.00254 0.92281 0.96753 1.21179 0.94810 0.98234 1.07138 1.21204 0.94335 0.97991 0.96239 1.20936 1.00436 0.91098 1.10818 0.93503 0.90592 0.90078 0.91025 0.88979 0.91398 0.93398 0.95730 0.90339 0.84642 0.91029 0.91898 0.93402 0.93113 0.93608 0.99463 0.93476 0.92753 0.95521 0.94262 0.93734 0.86367 0.85424 0.85050 0.84153 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.23 127.77 1.31 2.44 16 2 N -0.64 -11.35 3.01 -722.16 -2.17 -13.53 16 3 C 0.13 2.18 5.20 86.38 0.45 2.63 16 4 C -0.12 -2.44 5.80 30.59 0.18 -2.26 16 5 C 0.06 1.49 5.48 86.30 0.47 1.97 16 6 N -0.69 -20.07 6.25 -491.59 -3.07 -23.14 16 7 C 0.11 3.60 2.47 44.91 0.11 3.71 16 8 C -0.09 -3.13 5.30 30.59 0.16 -2.97 16 9 C -0.10 -4.14 5.41 30.59 0.17 -3.97 16 10 C 0.04 1.83 2.58 -11.54 -0.03 1.80 16 11 C -0.50 -26.95 6.61 25.60 0.17 -26.78 16 12 H 0.05 2.79 6.71 -2.91 -0.02 2.77 16 13 C 0.01 0.69 5.30 84.66 0.45 1.13 16 14 N -0.92 -53.38 11.33 21.45 0.24 -53.13 16 15 Si 0.94 43.92 29.54 68.60 2.03 45.94 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 C -0.10 -4.69 5.23 30.58 0.16 -4.53 16 20 C -0.11 -4.61 4.95 30.58 0.15 -4.45 16 21 C 0.20 4.25 6.55 38.22 0.25 4.50 16 22 C -0.22 -4.78 9.20 22.40 0.21 -4.57 16 23 C -0.09 -1.77 10.04 22.25 0.22 -1.54 16 24 C -0.19 -3.58 10.04 22.29 0.22 -3.35 16 25 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 26 C -0.21 -3.88 9.21 22.40 0.21 -3.68 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 0.80 6.20 -2.38 -0.01 0.79 16 29 H 0.08 0.78 7.89 -2.39 -0.02 0.76 16 30 H 0.07 1.28 6.21 -2.39 -0.01 1.27 16 31 H 0.09 1.26 7.89 -2.39 -0.02 1.24 16 32 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.02 0.61 7.44 -2.39 -0.02 0.59 16 35 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.34 10.32 8.47 -89.70 -0.76 9.56 16 37 H 0.07 2.32 7.80 -2.38 -0.02 2.30 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.96 6.62 -2.38 -0.02 1.94 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.05 2.93 6.08 -2.39 -0.01 2.92 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.04 1.47 7.45 -2.39 -0.02 1.45 16 47 H 0.04 2.04 7.20 -2.38 -0.02 2.02 16 48 H 0.12 2.59 6.15 -2.91 -0.02 2.57 16 49 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 50 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 51 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 52 H 0.14 1.95 6.14 -2.91 -0.02 1.93 16 Total: -1.00 -61.21 395.03 2.23 -58.98 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.12 Total: 25.97 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 5.08 Total: -41.09 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -5.00 Total: -89.80 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.21 2.23 -58.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.638 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds