Wall clock time and date at job start Tue Mar 31 2020 10:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99836 * 2 1 4 4 C 1.39670 * 120.00247 * 179.97438 * 2 1 3 5 5 C 1.38921 * 120.07272 * 0.02562 * 4 2 1 6 6 C 1.38109 * 119.92317 * 180.02562 * 5 4 2 7 7 C 1.38284 * 120.07218 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.91998 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00098 * 8 7 6 10 10 N 1.46894 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00559 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47073 * 275.00312 * 11 10 9 13 13 C 1.52994 * 109.46948 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47329 * 60.00330 * 13 12 11 15 15 C 1.50703 * 109.47299 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99761 * 119.99753 * 15 14 13 17 17 C 1.37878 * 119.99803 * 299.99770 * 15 14 13 18 18 N 1.31516 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47129 * 59.99677 * 19 17 15 21 21 H 1.48502 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46926 * 299.99685 * 19 17 15 23 23 C 1.53006 * 109.46836 * 299.99739 * 14 13 12 24 24 C 1.52993 * 109.47556 * 154.99999 * 11 10 9 25 25 C 1.38278 * 120.15335 * 0.27098 * 7 6 5 26 26 C 1.38105 * 120.07448 * 359.45469 * 25 7 6 27 27 H 1.09002 * 109.47562 * 269.99752 * 1 2 3 28 28 H 1.08995 * 109.47095 * 30.00373 * 1 2 3 29 29 H 1.08998 * 109.46974 * 150.00126 * 1 2 3 30 30 H 1.09001 * 109.46971 * 269.99918 * 3 2 1 31 31 H 1.09000 * 109.47474 * 29.99587 * 3 2 1 32 32 H 1.08997 * 109.47351 * 150.00039 * 3 2 1 33 33 H 1.08003 * 120.03690 * 0.04778 * 5 4 2 34 34 H 1.07998 * 119.95621 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47060 * 210.00153 * 8 7 6 36 36 H 1.09001 * 109.47380 * 330.00241 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 38 38 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 39 39 H 1.00905 * 110.99991 * 56.04757 * 10 9 8 40 40 H 1.08997 * 109.47150 * 34.99705 * 11 10 9 41 41 H 1.08997 * 109.47152 * 299.99816 * 12 11 10 42 42 H 1.08994 * 109.47007 * 59.99658 * 12 11 10 43 43 H 1.08997 * 109.47528 * 299.99548 * 13 12 11 44 44 H 1.09001 * 109.46793 * 179.97438 * 13 12 11 45 45 H 1.08997 * 109.47454 * 59.99173 * 14 13 12 46 46 H 0.96998 * 120.00068 * 180.02562 * 18 17 15 47 47 H 1.09008 * 109.46738 * 300.00395 * 23 14 13 48 48 H 1.08994 * 109.47007 * 179.97438 * 23 14 13 49 49 H 1.08998 * 109.47213 * 300.00452 * 24 11 10 50 50 H 1.09007 * 109.46721 * 60.00070 * 24 11 10 51 51 H 1.08001 * 119.96559 * 179.70085 * 25 7 6 52 52 H 1.08002 * 120.04105 * 180.27323 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 1.4704 -2.4135 0.0005 6 6 2.1641 -3.6078 0.0016 7 6 3.5470 -3.6058 0.0032 8 6 4.3005 -4.9110 0.0050 9 6 4.5572 -5.3536 -1.4369 10 7 5.2922 -6.6254 -1.4353 11 6 5.5576 -7.0820 -2.8061 12 6 4.3468 -7.8579 -3.3286 13 6 4.6230 -8.3328 -4.7565 14 6 5.8530 -9.2427 -4.7625 15 6 6.1255 -9.7100 -6.1691 16 1 7.0678 -9.4771 -6.6424 17 6 5.1716 -10.4350 -6.8515 18 7 4.0243 -10.7190 -6.2748 19 14 5.5096 -11.0149 -8.5948 20 1 6.7033 -11.8981 -8.6000 21 1 4.3347 -11.7681 -9.1024 22 1 5.7595 -9.8397 -9.4676 23 6 7.0638 -8.4668 -4.2399 24 6 6.7875 -7.9919 -2.8115 25 6 4.2399 -2.4092 0.0094 26 6 3.5525 -1.2114 0.0026 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 0.3904 -2.4157 -0.0007 34 1 1.6259 -4.5441 0.0020 35 1 5.2523 -4.7803 0.5199 36 1 3.7108 -5.6703 0.5186 37 1 3.6053 -5.4843 -1.9518 38 1 5.1468 -4.5943 -1.9506 39 1 4.7960 -7.3291 -0.9092 40 1 5.7407 -6.2197 -3.4472 41 1 4.1635 -8.7202 -2.6876 42 1 3.4706 -7.2096 -3.3248 43 1 4.8059 -7.4703 -5.3974 44 1 3.7606 -8.8860 -5.1286 45 1 5.6701 -10.1052 -4.1216 46 1 3.3535 -11.2293 -6.7547 47 1 7.2467 -7.6042 -4.8808 48 1 7.9400 -9.1151 -4.2437 49 1 7.6500 -7.4392 -2.4392 50 1 6.6042 -8.8543 -2.1704 51 1 5.3199 -2.4113 0.0155 52 1 4.0943 -0.2771 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173326436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:05 Heat of formation + Delta-G solvation = 8.304044 kcal Electronic energy + Delta-G solvation = -25724.759563 eV Core-core repulsion = 22301.751690 eV Total energy + Delta-G solvation = -3423.007873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.87205 -38.23305 -36.89574 -35.01718 -32.80017 -31.48211 -31.30354 -29.60296 -28.95184 -28.47412 -27.08134 -24.79216 -23.77012 -22.48876 -22.08832 -21.43317 -20.60545 -20.23675 -18.70185 -17.59900 -16.26502 -16.15566 -15.47846 -15.40855 -15.27120 -14.71735 -14.58393 -14.35320 -13.83367 -13.77319 -13.62915 -13.25725 -13.00154 -12.99194 -12.75969 -12.48635 -12.40082 -12.30178 -12.19292 -11.97306 -11.48150 -11.41980 -11.18990 -11.13114 -10.92352 -10.76535 -10.66343 -10.38765 -10.26304 -10.08626 -9.84494 -9.79750 -9.31595 -9.01228 -8.93115 -8.62199 -8.26969 -7.88445 -7.41481 -5.92322 -3.98288 1.35342 1.47470 2.84586 3.34967 3.39346 3.42265 3.74453 4.45611 4.49881 4.61134 4.63417 4.83842 4.89806 4.96100 5.10532 5.18387 5.21248 5.29288 5.33906 5.35935 5.38148 5.39606 5.50543 5.53510 5.59440 5.74817 5.80151 5.91892 5.97625 6.05525 6.16524 6.18604 6.25490 6.34458 6.37626 6.47242 6.49349 6.70374 6.73081 6.74845 6.75688 6.88920 6.98345 7.00324 7.19956 7.27753 7.29558 7.47377 7.60105 7.75565 7.81133 8.09518 8.22111 8.54355 9.05994 9.65894 11.12995 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002048 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.848668 B =13671.015196 C =14300.484450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.642 5.642 3 C 0.095 3.905 4 C 0.206 3.794 5 C -0.196 4.196 6 C -0.068 4.068 7 C -0.133 4.133 8 C -0.071 4.071 9 C 0.065 3.935 10 N -0.691 5.691 11 C 0.091 3.909 12 C -0.142 4.142 13 C -0.105 4.105 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.109 4.109 24 C -0.100 4.100 25 C -0.067 4.067 26 C -0.196 4.196 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.336 0.664 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.090 0.910 45 H 0.024 0.976 46 H 0.259 0.741 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.121 0.879 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 21.321 15.864 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.049 4.049 4 C 0.105 3.895 5 C -0.218 4.218 6 C -0.087 4.087 7 C -0.135 4.135 8 C -0.108 4.108 9 C -0.064 4.064 10 N -0.320 5.320 11 C -0.018 4.018 12 C -0.181 4.181 13 C -0.144 4.144 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.085 4.085 26 C -0.218 4.218 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.153 0.847 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.108 0.892 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.139 0.861 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.414 21.713 15.903 27.453 hybrid contribution -0.948 -0.513 -1.332 1.714 sum -6.362 21.200 14.570 26.499 Atomic orbital electron populations 1.21602 0.79690 1.02612 1.00978 1.46271 1.04873 1.03174 1.81171 1.21600 0.97230 0.84954 1.01082 1.17820 0.91256 0.85562 0.94853 1.20649 0.99442 0.91121 1.10564 1.20820 0.93624 0.97236 0.96978 1.19651 0.93546 0.94945 1.05361 1.20465 0.99809 0.93434 0.97133 1.21922 0.96506 0.92393 0.95592 1.60706 1.50714 1.05303 1.15278 1.21613 0.95698 0.97128 0.87383 1.22270 0.96358 0.98716 1.00797 1.21548 1.03080 0.98408 0.91362 1.18649 0.89698 0.93115 0.95496 1.21228 1.01149 1.33329 0.99271 0.92877 1.24977 0.95234 0.96058 0.97835 1.69870 1.06310 1.39758 1.37153 0.86714 0.77578 0.78827 0.85192 1.20352 1.21403 1.20381 1.21642 1.00058 0.99347 0.93670 1.21495 0.96113 0.98030 0.98203 1.20813 0.99477 0.91324 0.96931 1.20644 0.92007 0.98531 1.10647 0.93568 0.91723 0.91273 0.93504 0.91761 0.91322 0.86251 0.86233 0.90611 0.91599 0.95303 0.91396 0.84679 0.91371 0.92869 0.94388 0.94990 0.89213 0.95817 0.93122 0.93589 0.93434 0.93137 0.92843 0.86088 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.19 59.85 0.61 1.20 16 2 N -0.64 -5.41 3.41 -187.55 -0.64 -6.05 16 3 C 0.09 0.58 10.19 59.85 0.61 1.19 16 4 C 0.21 2.13 6.55 -83.79 -0.55 1.59 16 5 C -0.20 -2.04 9.21 -39.38 -0.36 -2.40 16 6 C -0.07 -0.74 9.69 -39.61 -0.38 -1.12 16 7 C -0.13 -1.49 5.14 -104.59 -0.54 -2.02 16 8 C -0.07 -0.79 5.60 -27.88 -0.16 -0.94 16 9 C 0.07 0.87 5.47 -3.83 -0.02 0.84 16 10 N -0.69 -10.15 6.25 -106.73 -0.67 -10.82 16 11 C 0.09 1.58 2.47 -67.71 -0.17 1.42 16 12 C -0.14 -2.77 5.17 -26.73 -0.14 -2.91 16 13 C -0.11 -2.51 4.98 -26.73 -0.13 -2.64 16 14 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 15 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.74 11.32 55.43 0.63 -25.12 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.11 -2.32 5.14 -26.71 -0.14 -2.46 16 24 C -0.10 -1.83 5.53 -26.71 -0.15 -1.98 16 25 C -0.07 -0.71 9.69 -39.62 -0.38 -1.10 16 26 C -0.20 -2.00 9.21 -39.38 -0.36 -2.37 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 29 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.07 0.40 6.19 -51.93 -0.32 0.07 16 33 H 0.12 1.05 6.14 -52.48 -0.32 0.73 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.03 0.41 7.44 -51.93 -0.39 0.02 16 38 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.34 4.71 8.47 -39.29 -0.33 4.37 16 40 H 0.07 1.24 7.80 -51.93 -0.40 0.83 16 41 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 42 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 52 H 0.12 1.01 6.14 -52.49 -0.32 0.69 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -29.68 399.73 -11.92 -41.60 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -9.40 Total: 3.43 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.84 Total: -25.62 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.68 Total: -41.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.68 -11.92 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.901 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds