Wall clock time and date at job start Tue Mar 31 2020 10:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99836 * 2 1 4 4 C 1.39670 * 120.00247 * 179.97438 * 2 1 3 5 5 C 1.38921 * 120.07272 * 0.02562 * 4 2 1 6 6 C 1.38109 * 119.92317 * 180.02562 * 5 4 2 7 7 C 1.38284 * 120.07218 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.91998 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00098 * 8 7 6 10 10 N 1.46894 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00559 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47073 * 275.00312 * 11 10 9 13 13 C 1.52994 * 109.46948 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47329 * 60.00330 * 13 12 11 15 15 C 1.50703 * 109.47299 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99761 * 119.99753 * 15 14 13 17 17 C 1.37878 * 119.99803 * 299.99770 * 15 14 13 18 18 N 1.31516 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47129 * 59.99677 * 19 17 15 21 21 H 1.48502 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46926 * 299.99685 * 19 17 15 23 23 C 1.53006 * 109.46836 * 299.99739 * 14 13 12 24 24 C 1.52993 * 109.47556 * 154.99999 * 11 10 9 25 25 C 1.38278 * 120.15335 * 0.27098 * 7 6 5 26 26 C 1.38105 * 120.07448 * 359.45469 * 25 7 6 27 27 H 1.09002 * 109.47562 * 269.99752 * 1 2 3 28 28 H 1.08995 * 109.47095 * 30.00373 * 1 2 3 29 29 H 1.08998 * 109.46974 * 150.00126 * 1 2 3 30 30 H 1.09001 * 109.46971 * 269.99918 * 3 2 1 31 31 H 1.09000 * 109.47474 * 29.99587 * 3 2 1 32 32 H 1.08997 * 109.47351 * 150.00039 * 3 2 1 33 33 H 1.08003 * 120.03690 * 0.04778 * 5 4 2 34 34 H 1.07998 * 119.95621 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47060 * 210.00153 * 8 7 6 36 36 H 1.09001 * 109.47380 * 330.00241 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 38 38 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 39 39 H 1.00905 * 110.99991 * 56.04757 * 10 9 8 40 40 H 1.08997 * 109.47150 * 34.99705 * 11 10 9 41 41 H 1.08997 * 109.47152 * 299.99816 * 12 11 10 42 42 H 1.08994 * 109.47007 * 59.99658 * 12 11 10 43 43 H 1.08997 * 109.47528 * 299.99548 * 13 12 11 44 44 H 1.09001 * 109.46793 * 179.97438 * 13 12 11 45 45 H 1.08997 * 109.47454 * 59.99173 * 14 13 12 46 46 H 0.96998 * 120.00068 * 180.02562 * 18 17 15 47 47 H 1.09008 * 109.46738 * 300.00395 * 23 14 13 48 48 H 1.08994 * 109.47007 * 179.97438 * 23 14 13 49 49 H 1.08998 * 109.47213 * 300.00452 * 24 11 10 50 50 H 1.09007 * 109.46721 * 60.00070 * 24 11 10 51 51 H 1.08001 * 119.96559 * 179.70085 * 25 7 6 52 52 H 1.08002 * 120.04105 * 180.27323 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 1.4704 -2.4135 0.0005 6 6 2.1641 -3.6078 0.0016 7 6 3.5470 -3.6058 0.0032 8 6 4.3005 -4.9110 0.0050 9 6 4.5572 -5.3536 -1.4369 10 7 5.2922 -6.6254 -1.4353 11 6 5.5576 -7.0820 -2.8061 12 6 4.3468 -7.8579 -3.3286 13 6 4.6230 -8.3328 -4.7565 14 6 5.8530 -9.2427 -4.7625 15 6 6.1255 -9.7100 -6.1691 16 1 7.0678 -9.4771 -6.6424 17 6 5.1716 -10.4350 -6.8515 18 7 4.0243 -10.7190 -6.2748 19 14 5.5096 -11.0149 -8.5948 20 1 6.7033 -11.8981 -8.6000 21 1 4.3347 -11.7681 -9.1024 22 1 5.7595 -9.8397 -9.4676 23 6 7.0638 -8.4668 -4.2399 24 6 6.7875 -7.9919 -2.8115 25 6 4.2399 -2.4092 0.0094 26 6 3.5525 -1.2114 0.0026 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 0.3904 -2.4157 -0.0007 34 1 1.6259 -4.5441 0.0020 35 1 5.2523 -4.7803 0.5199 36 1 3.7108 -5.6703 0.5186 37 1 3.6053 -5.4843 -1.9518 38 1 5.1468 -4.5943 -1.9506 39 1 4.7960 -7.3291 -0.9092 40 1 5.7407 -6.2197 -3.4472 41 1 4.1635 -8.7202 -2.6876 42 1 3.4706 -7.2096 -3.3248 43 1 4.8059 -7.4703 -5.3974 44 1 3.7606 -8.8860 -5.1286 45 1 5.6701 -10.1052 -4.1216 46 1 3.3535 -11.2293 -6.7547 47 1 7.2467 -7.6042 -4.8808 48 1 7.9400 -9.1151 -4.2437 49 1 7.6500 -7.4392 -2.4392 50 1 6.6042 -8.8543 -2.1704 51 1 5.3199 -2.4113 0.0155 52 1 4.0943 -0.2771 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173326436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:04 Heat of formation + Delta-G solvation = -6.140208 kcal Electronic energy + Delta-G solvation = -25725.385913 eV Core-core repulsion = 22301.751690 eV Total energy + Delta-G solvation = -3423.634223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.61337 -39.75177 -37.70572 -36.37145 -34.48644 -32.77746 -32.02997 -31.30472 -30.32891 -28.99027 -28.28009 -26.22837 -24.97477 -23.30958 -23.23175 -22.90893 -22.12191 -21.13754 -20.41543 -18.37868 -18.26512 -16.94286 -16.75145 -16.39101 -16.36163 -15.91795 -15.63476 -15.45030 -14.94551 -14.80621 -14.72105 -14.45495 -14.40459 -14.24740 -13.98491 -13.50375 -13.45314 -13.41715 -12.98765 -12.89919 -12.87715 -12.82648 -12.64609 -12.57957 -12.33952 -12.19186 -12.03767 -11.82873 -11.77199 -11.68269 -11.49659 -11.17364 -10.76996 -10.59800 -10.49364 -10.35641 -9.78877 -9.21666 -8.10138 -8.05945 -6.20251 0.57832 0.68838 1.40845 1.42110 1.49661 2.28270 2.43962 2.93880 3.19219 3.30653 3.92194 3.95950 4.07920 4.14642 4.18901 4.22034 4.28420 4.42822 4.45540 4.49499 4.51437 4.60871 4.61805 4.65408 4.69830 4.73586 4.80242 4.82195 4.86064 4.87896 4.89663 4.93837 4.98934 5.08530 5.14579 5.22109 5.25349 5.26822 5.36037 5.42558 5.43037 5.48434 5.57117 5.62138 5.69783 5.90503 6.00601 6.05552 6.18012 6.21661 6.38587 6.43343 6.55856 6.59244 6.92582 7.47394 8.97186 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002048 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.848668 B =13671.015196 C =14300.484450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.648 5.648 3 C 0.089 3.911 4 C 0.197 3.803 5 C -0.208 4.208 6 C -0.078 4.078 7 C -0.149 4.149 8 C -0.059 4.059 9 C 0.069 3.931 10 N -0.682 5.682 11 C 0.102 3.898 12 C -0.131 4.131 13 C -0.098 4.098 14 C 0.045 3.955 15 C -0.535 4.535 16 H 0.050 0.950 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.102 4.102 24 C -0.092 4.092 25 C -0.074 4.074 26 C -0.206 4.206 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.343 0.657 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.055 0.945 45 H -0.007 1.007 46 H 0.259 0.741 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.052 0.948 51 H 0.131 0.869 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 22.926 16.543 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.360 5.360 3 C -0.053 4.053 4 C 0.095 3.905 5 C -0.231 4.231 6 C -0.097 4.097 7 C -0.151 4.151 8 C -0.096 4.096 9 C -0.060 4.060 10 N -0.312 5.312 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.137 4.137 14 C 0.027 3.973 15 C -0.573 4.573 16 H 0.069 0.931 17 C -0.189 4.189 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.092 4.092 26 C -0.228 4.228 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.011 0.989 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.149 0.851 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.170 23.344 16.596 29.105 hybrid contribution -1.075 -0.958 -1.537 2.106 sum -6.245 22.386 15.059 27.693 Atomic orbital electron populations 1.21739 0.78655 1.03320 1.01617 1.46550 1.05792 1.03216 1.80432 1.21748 0.97589 0.84454 1.01527 1.18041 0.91646 0.86391 0.94396 1.20845 1.00174 0.91187 1.10846 1.20989 0.93805 0.97794 0.97064 1.19702 0.93751 0.95092 1.06593 1.20333 1.00137 0.93645 0.95526 1.21925 0.95606 0.91395 0.97053 1.60672 1.51306 1.05949 1.13225 1.21390 0.94175 0.96383 0.88820 1.22139 0.98033 0.98981 0.97858 1.21343 1.01089 0.97314 0.93947 1.18629 0.91972 0.92769 0.93931 1.21632 1.01154 1.33760 1.00773 0.93129 1.25761 0.95065 0.96256 1.01776 1.70018 1.06970 1.40140 1.38565 0.85712 0.77582 0.78484 0.80484 1.19663 1.21001 1.19729 1.21516 0.98164 0.98754 0.95610 1.21399 0.97310 0.98352 0.95952 1.21007 1.00126 0.91389 0.96691 1.20865 0.92246 0.99075 1.10654 0.92910 0.90063 0.91564 0.93301 0.89921 0.91117 0.85160 0.85670 0.90201 0.91005 0.96265 0.91834 0.83937 0.91714 0.93249 0.93373 0.95812 0.92638 0.98934 0.93188 0.93596 0.93454 0.91018 0.92900 0.85088 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.19 127.77 1.30 2.27 16 2 N -0.65 -9.87 3.41 -747.29 -2.55 -12.42 16 3 C 0.09 0.92 10.19 127.77 1.30 2.22 16 4 C 0.20 3.87 6.55 38.22 0.25 4.12 16 5 C -0.21 -4.17 9.21 22.40 0.21 -3.97 16 6 C -0.08 -1.64 9.69 22.25 0.22 -1.42 16 7 C -0.15 -3.18 5.14 -19.84 -0.10 -3.28 16 8 C -0.06 -1.21 5.60 29.85 0.17 -1.05 16 9 C 0.07 1.73 5.47 86.30 0.47 2.21 16 10 N -0.68 -18.76 6.25 -491.59 -3.07 -21.83 16 11 C 0.10 3.42 2.47 44.92 0.11 3.53 16 12 C -0.13 -5.07 5.17 30.59 0.16 -4.91 16 13 C -0.10 -4.77 4.98 30.59 0.15 -4.62 16 14 C 0.05 2.33 2.10 -11.54 -0.02 2.30 16 15 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.55 5.30 84.65 0.45 0.99 16 18 N -0.92 -54.19 11.32 21.45 0.24 -53.94 16 19 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.10 -4.32 5.14 30.61 0.16 -4.16 16 24 C -0.09 -3.22 5.53 30.61 0.17 -3.05 16 25 C -0.07 -1.48 9.69 22.25 0.22 -1.27 16 26 C -0.21 -3.96 9.21 22.40 0.21 -3.75 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 29 H 0.07 0.75 6.20 -2.39 -0.01 0.74 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.54 8.07 -2.39 -0.02 0.52 16 32 H 0.07 0.69 6.19 -2.39 -0.01 0.68 16 33 H 0.13 2.19 6.14 -2.91 -0.02 2.17 16 34 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 37 H 0.02 0.52 7.44 -2.39 -0.02 0.50 16 38 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 39 H 0.34 8.92 8.47 -89.69 -0.76 8.16 16 40 H 0.06 2.25 7.80 -2.39 -0.02 2.23 16 41 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 42 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 43 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 51 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 52 H 0.13 2.06 6.14 -2.91 -0.02 2.04 16 Total: -1.00 -63.90 399.73 2.39 -61.51 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.12 Total: 23.99 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 5.63 Total: -43.91 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -5.38 Total: -88.20 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.90 2.39 -61.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.372 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds