Wall clock time and date at job start Tue Mar 31 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99486 * 2 1 4 4 H 1.48507 * 109.46764 * 185.00860 * 3 2 1 5 5 H 1.48502 * 109.47020 * 305.00379 * 3 2 1 6 6 H 1.48489 * 109.47284 * 65.00506 * 3 2 1 7 7 C 1.37873 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99396 * 185.32000 * 7 2 1 9 9 S 1.76194 * 120.00057 * 5.32680 * 7 2 1 10 10 O 1.42095 * 106.40752 * 71.73700 * 9 7 2 11 11 O 1.42098 * 106.40311 * 298.81543 * 9 7 2 12 12 N 1.65610 * 107.21701 * 185.27599 * 9 7 2 13 13 C 1.46502 * 119.99654 * 68.74224 * 12 9 7 14 14 C 1.50703 * 113.00257 * 68.11706 * 13 12 9 15 15 C 1.38262 * 119.99357 * 205.54482 * 14 13 12 16 16 C 1.38224 * 120.02329 * 180.02562 * 15 14 13 17 17 C 1.38232 * 120.01471 * 359.97438 * 16 15 14 18 18 C 1.38335 * 119.98667 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01264 * 179.97438 * 18 17 16 20 20 C 1.38199 * 119.99164 * 25.54699 * 14 13 12 21 21 C 1.54034 * 113.81440 * 199.94484 * 13 12 9 22 22 O 1.44439 * 85.42843 * 91.80676 * 21 13 12 23 23 C 1.44177 * 93.37781 * 24.09173 * 22 21 13 24 24 H 0.96994 * 120.00091 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99920 * 248.74060 * 12 9 7 26 26 H 1.07993 * 119.98458 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.98926 * 180.28293 * 16 15 14 28 28 H 1.08001 * 120.00536 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.00235 * 359.97438 * 20 14 13 30 30 H 1.08996 * 113.86228 * 205.91922 * 21 13 12 31 31 H 1.09005 * 113.86317 * 337.61244 * 21 13 12 32 32 H 1.09000 * 113.86432 * 221.77068 * 23 22 21 33 33 H 1.08994 * 113.98800 * 90.07174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7045 1.3492 -0.1222 5 1 1.8009 2.4481 -1.1468 6 1 1.9842 2.3423 1.2688 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1958 0.0873 9 16 1.1294 -2.7167 -0.1404 10 8 0.6649 -2.7900 -1.4813 11 8 0.2663 -2.7892 0.9860 12 7 2.2355 -3.9362 0.0386 13 6 2.8704 -4.1640 1.3391 14 6 1.9097 -4.6738 2.3823 15 6 2.1621 -4.4493 3.7230 16 6 1.2817 -4.9171 4.6803 17 6 0.1480 -5.6093 4.2978 18 6 -0.1050 -5.8343 2.9565 19 17 -1.5282 -6.7042 2.4753 20 6 0.7767 -5.3658 1.9986 21 6 4.1836 -4.9651 1.2583 22 8 4.8289 -3.6763 1.1633 23 6 3.7439 -2.9895 1.8191 24 1 -0.4850 0.8400 -0.0004 25 1 2.4628 -4.4996 -0.7175 26 1 3.0475 -3.9081 4.0223 27 1 1.4770 -4.7374 5.7272 28 1 -0.5396 -5.9752 5.0460 29 1 0.5795 -5.5408 0.9513 30 1 4.4231 -5.5122 2.1700 31 1 4.2747 -5.5728 0.3580 32 1 3.4871 -2.0337 1.3626 33 1 3.8472 -2.9307 2.9025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:57 Heat of formation + Delta-G solvation = -67.247645 kcal Electronic energy + Delta-G solvation = -23099.005811 eV Core-core repulsion = 19471.990752 eV Total energy + Delta-G solvation = -3627.015059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -40.80945 -38.55302 -36.21701 -35.27652 -34.03903 -33.81724 -33.11910 -30.82854 -30.48796 -27.25002 -26.95009 -25.80206 -22.78913 -22.27981 -19.87571 -18.94427 -17.94327 -17.10902 -16.71526 -15.99715 -15.70729 -15.42769 -15.09335 -14.85554 -14.77243 -14.11228 -13.98909 -13.48606 -13.34714 -13.19440 -12.54007 -12.08247 -11.87287 -11.74359 -11.35555 -11.26953 -11.23447 -11.09490 -10.78192 -10.63317 -10.59847 -10.47628 -10.31661 -10.21868 -9.59624 -9.31872 -9.03919 -8.68926 -8.51633 -8.43536 -6.76004 -5.39552 1.35047 1.51145 2.19321 2.35323 3.01818 3.11199 3.18310 3.71925 3.81831 4.01184 4.44720 4.53744 4.57911 4.72046 5.01935 5.15070 5.26137 5.32073 5.43940 5.60202 5.63108 5.77177 5.80949 5.99128 6.03144 6.28020 6.29113 6.36780 6.44312 6.48342 6.59071 6.78114 6.98720 7.26396 7.72218 7.87529 8.81646 10.17115 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.006023 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.093640 B = 4647.768650 C = 5320.309878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.135 3.865 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.026 5.026 8 H 0.110 0.890 9 S 2.705 3.295 10 O -1.009 7.009 11 O -0.981 6.981 12 N -1.112 6.112 13 C 0.166 3.834 14 C -0.071 4.071 15 C -0.106 4.106 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.030 4.030 19 Cl -0.080 7.080 20 C -0.061 4.061 21 C 0.045 3.955 22 O -0.370 6.370 23 C 0.003 3.997 24 H 0.291 0.709 25 H 0.408 0.592 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -10.036 8.206 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.084 4.084 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.158 5.158 8 H 0.128 0.872 9 S 2.805 3.195 10 O -1.000 7.000 11 O -0.971 6.971 12 N -0.864 5.864 13 C 0.074 3.926 14 C -0.074 4.074 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.057 4.057 19 Cl -0.051 7.051 20 C -0.080 4.080 21 C -0.033 4.033 22 O -0.289 6.289 23 C -0.074 4.074 24 H 0.101 0.899 25 H 0.239 0.761 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.296 -9.974 8.030 13.506 hybrid contribution 0.571 0.924 -0.295 1.126 sum 4.867 -9.050 7.735 12.862 Atomic orbital electron populations 1.69930 1.06737 1.30656 1.39267 1.24726 0.94428 1.00720 0.88497 0.86203 0.80689 0.80542 0.78689 1.18366 1.19573 1.19508 1.30701 1.06296 1.11890 1.66955 0.87222 1.00840 0.72346 0.73302 0.73037 1.93393 1.79726 1.87666 1.39169 1.93421 1.63724 1.86903 1.53007 1.55945 1.63342 1.52649 1.14437 1.21421 0.91056 0.96315 0.83774 1.19932 0.95662 0.97562 0.94196 1.21069 1.00144 0.99313 0.91941 1.20949 0.94121 0.98314 0.99503 1.20957 0.98218 1.00065 0.93856 1.20806 0.90027 1.00481 0.94349 1.98346 1.39360 1.75099 1.92335 1.20707 0.92498 0.95692 0.99132 1.24329 0.87783 0.88567 1.02664 1.89730 1.42145 1.18503 1.78492 1.25311 0.83295 0.99906 0.98905 0.89905 0.76054 0.85212 0.85217 0.85358 0.85586 0.89195 0.88589 0.84491 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.83 13.00 55.43 0.72 -23.11 16 2 C 0.14 3.63 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -1.03 -26.85 8.16 30.60 0.25 -26.60 16 8 H 0.11 2.64 5.83 -52.48 -0.31 2.33 16 9 S 2.70 68.72 5.01 -107.50 -0.54 68.18 16 10 O -1.01 -28.95 18.02 -57.18 -1.03 -29.98 16 11 O -0.98 -26.75 14.99 -57.18 -0.86 -27.61 16 12 N -1.11 -21.18 4.75 -5.83 -0.03 -21.21 16 13 C 0.17 2.76 1.25 -131.89 -0.17 2.59 16 14 C -0.07 -1.18 4.27 -104.63 -0.45 -1.63 16 15 C -0.11 -1.50 9.24 -39.58 -0.37 -1.87 16 16 C -0.11 -1.42 10.05 -39.59 -0.40 -1.82 16 17 C -0.11 -1.56 9.83 -39.55 -0.39 -1.95 16 18 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -1.22 28.96 -51.86 -1.50 -2.72 16 20 C -0.06 -1.08 7.62 -39.55 -0.30 -1.38 16 21 C 0.04 0.59 8.54 37.64 0.32 0.91 16 22 O -0.37 -6.02 12.46 -35.23 -0.44 -6.46 16 23 C 0.00 0.05 8.16 37.64 0.31 0.35 16 24 H 0.29 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.41 6.62 8.82 -34.48 -0.30 6.32 16 26 H 0.13 1.50 5.92 -52.49 -0.31 1.19 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 2.25 7.45 -52.49 -0.39 1.86 16 30 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.14 2.65 3.99 -51.93 -0.21 2.44 16 33 H 0.09 1.25 5.76 -51.93 -0.30 0.95 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -34.14 305.34 -8.27 -42.41 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.64 Total: 9.57 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -1.53 Total: -28.57 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.69 Total: -44.33 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -2.33 Total: -64.05 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 68.72 SS G_CDS: -0.54 Total: 68.18 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.14 -8.27 -42.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.838 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds