Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99486 * 2 1 4 4 H 1.48507 * 109.46764 * 185.00860 * 3 2 1 5 5 H 1.48502 * 109.47020 * 305.00379 * 3 2 1 6 6 H 1.48489 * 109.47284 * 65.00506 * 3 2 1 7 7 C 1.37873 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99396 * 185.32000 * 7 2 1 9 9 S 1.76194 * 120.00057 * 5.32680 * 7 2 1 10 10 O 1.42095 * 106.40752 * 71.73700 * 9 7 2 11 11 O 1.42098 * 106.40311 * 298.81543 * 9 7 2 12 12 N 1.65610 * 107.21701 * 185.27599 * 9 7 2 13 13 C 1.46502 * 119.99654 * 68.74224 * 12 9 7 14 14 C 1.50703 * 113.00257 * 68.11706 * 13 12 9 15 15 C 1.38262 * 119.99357 * 205.54482 * 14 13 12 16 16 C 1.38224 * 120.02329 * 180.02562 * 15 14 13 17 17 C 1.38232 * 120.01471 * 359.97438 * 16 15 14 18 18 C 1.38335 * 119.98667 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01264 * 179.97438 * 18 17 16 20 20 C 1.38199 * 119.99164 * 25.54699 * 14 13 12 21 21 C 1.54034 * 113.81440 * 199.94484 * 13 12 9 22 22 O 1.44439 * 85.42843 * 91.80676 * 21 13 12 23 23 C 1.44177 * 93.37781 * 24.09173 * 22 21 13 24 24 H 0.96994 * 120.00091 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99920 * 248.74060 * 12 9 7 26 26 H 1.07993 * 119.98458 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.98926 * 180.28293 * 16 15 14 28 28 H 1.08001 * 120.00536 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.00235 * 359.97438 * 20 14 13 30 30 H 1.08996 * 113.86228 * 205.91922 * 21 13 12 31 31 H 1.09005 * 113.86317 * 337.61244 * 21 13 12 32 32 H 1.09000 * 113.86432 * 221.77068 * 23 22 21 33 33 H 1.08994 * 113.98800 * 90.07174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7045 1.3492 -0.1222 5 1 1.8009 2.4481 -1.1468 6 1 1.9842 2.3423 1.2688 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1958 0.0873 9 16 1.1294 -2.7167 -0.1404 10 8 0.6649 -2.7900 -1.4813 11 8 0.2663 -2.7892 0.9860 12 7 2.2355 -3.9362 0.0386 13 6 2.8704 -4.1640 1.3391 14 6 1.9097 -4.6738 2.3823 15 6 2.1621 -4.4493 3.7230 16 6 1.2817 -4.9171 4.6803 17 6 0.1480 -5.6093 4.2978 18 6 -0.1050 -5.8343 2.9565 19 17 -1.5282 -6.7042 2.4753 20 6 0.7767 -5.3658 1.9986 21 6 4.1836 -4.9651 1.2583 22 8 4.8289 -3.6763 1.1633 23 6 3.7439 -2.9895 1.8191 24 1 -0.4850 0.8400 -0.0004 25 1 2.4628 -4.4996 -0.7175 26 1 3.0475 -3.9081 4.0223 27 1 1.4770 -4.7374 5.7272 28 1 -0.5396 -5.9752 5.0460 29 1 0.5795 -5.5408 0.9513 30 1 4.4231 -5.5122 2.1700 31 1 4.2747 -5.5728 0.3580 32 1 3.4871 -2.0337 1.3626 33 1 3.8472 -2.9307 2.9025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -94.253219 kcal Electronic energy + Delta-G solvation = -23100.176860 eV Core-core repulsion = 19471.990752 eV Total energy + Delta-G solvation = -3628.186109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01463 -39.68218 -37.44049 -37.32696 -36.10002 -35.37927 -34.99151 -32.07109 -31.64426 -28.72420 -28.37817 -27.32755 -23.93498 -23.41333 -21.34208 -20.72007 -19.54881 -18.48377 -18.40109 -17.49426 -17.16225 -16.79735 -16.41791 -16.23843 -15.96011 -15.88035 -15.64633 -15.00276 -14.56288 -14.40477 -14.00320 -13.76953 -13.41722 -13.04078 -12.97969 -12.64846 -12.53952 -12.51823 -12.45156 -12.31113 -12.26400 -12.23464 -11.93947 -11.71643 -11.26971 -10.92488 -10.81262 -10.21083 -9.72330 -9.57515 -8.74561 -7.46689 0.20953 0.31122 0.37775 1.17894 1.32479 1.35428 1.51880 2.19630 2.56001 2.58561 2.64325 2.88452 3.32620 3.51961 3.74007 3.93500 4.05757 4.19992 4.25566 4.29034 4.43650 4.56015 4.61557 4.70766 4.82802 4.89860 4.99919 5.10362 5.14905 5.31510 5.32752 5.40746 5.56636 5.90701 5.91705 6.24947 6.78951 8.20873 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.006023 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.093640 B = 4647.768650 C = 5320.309878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.981 3.019 4 H -0.247 1.247 5 H -0.265 1.265 6 H -0.255 1.255 7 C -1.038 5.038 8 H 0.126 0.874 9 S 2.713 3.287 10 O -1.055 7.055 11 O -1.007 7.007 12 N -1.102 6.102 13 C 0.149 3.851 14 C -0.087 4.087 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.050 4.050 19 Cl -0.083 7.083 20 C -0.092 4.092 21 C 0.059 3.941 22 O -0.385 6.385 23 C -0.001 4.001 24 H 0.297 0.703 25 H 0.418 0.582 26 H 0.159 0.841 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -9.902 10.433 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.137 4.137 3 Si 0.799 3.201 4 H -0.170 1.170 5 H -0.190 1.190 6 H -0.179 1.179 7 C -1.171 5.171 8 H 0.144 0.856 9 S 2.813 3.187 10 O -1.045 7.045 11 O -0.997 6.997 12 N -0.858 5.858 13 C 0.058 3.942 14 C -0.090 4.090 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.077 4.077 19 Cl -0.055 7.055 20 C -0.111 4.111 21 C -0.019 4.019 22 O -0.304 6.304 23 C -0.078 4.078 24 H 0.107 0.893 25 H 0.253 0.747 26 H 0.176 0.824 27 H 0.189 0.811 28 H 0.171 0.829 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.491 -9.870 10.251 15.641 hybrid contribution -0.098 0.769 -0.940 1.218 sum 6.394 -9.102 9.310 14.505 Atomic orbital electron populations 1.70025 1.08645 1.32074 1.40946 1.25891 0.95218 1.04937 0.87644 0.85229 0.79721 0.75672 0.79444 1.17002 1.18974 1.17892 1.31033 1.07266 1.12394 1.66380 0.85637 1.00239 0.72802 0.73934 0.71683 1.93323 1.81334 1.88556 1.41335 1.93373 1.65409 1.87547 1.53369 1.55294 1.62735 1.51301 1.16438 1.21821 0.92304 0.97806 0.82265 1.20046 0.95515 0.98036 0.95371 1.21458 1.01378 0.99013 0.90984 1.21459 0.92774 0.96337 1.01339 1.21355 0.99100 0.99649 0.93229 1.21053 0.90043 1.01211 0.95361 1.98334 1.39444 1.75158 1.92529 1.20725 0.94042 0.97730 0.98644 1.24585 0.84314 0.87687 1.05279 1.89710 1.42018 1.19893 1.78815 1.25321 0.83489 0.98409 1.00572 0.89268 0.74706 0.82399 0.81103 0.82908 0.87578 0.85650 0.86872 0.87451 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.59 13.00 21.45 0.28 -51.31 16 2 C 0.08 4.14 5.46 84.65 0.46 4.61 16 3 Si 0.98 40.21 29.54 68.60 2.03 42.24 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -1.04 -54.83 8.16 67.73 0.55 -54.27 16 8 H 0.13 6.03 5.83 -2.91 -0.02 6.01 16 9 S 2.71 141.87 5.01 -56.49 -0.28 141.59 16 10 O -1.06 -63.13 18.02 -128.00 -2.31 -65.44 16 11 O -1.01 -56.76 14.99 -128.00 -1.92 -58.68 16 12 N -1.10 -42.40 4.75 -183.42 -0.87 -43.28 16 13 C 0.15 4.75 1.25 3.56 0.00 4.75 16 14 C -0.09 -2.78 4.27 -19.87 -0.08 -2.87 16 15 C -0.11 -2.77 9.24 22.27 0.21 -2.56 16 16 C -0.10 -2.23 10.05 22.26 0.22 -2.00 16 17 C -0.11 -2.93 9.83 22.29 0.22 -2.71 16 18 C -0.05 -1.61 6.32 22.32 0.14 -1.47 16 19 Cl -0.08 -2.56 28.96 -2.72 -0.08 -2.64 16 20 C -0.09 -3.26 7.62 22.29 0.17 -3.09 16 21 C 0.06 1.38 8.54 72.29 0.62 2.00 16 22 O -0.39 -11.56 12.46 -148.98 -1.86 -13.42 16 23 C 0.00 -0.03 8.16 72.30 0.59 0.56 16 24 H 0.30 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.42 13.86 8.82 -96.74 -0.85 13.00 16 26 H 0.16 2.93 5.92 -2.91 -0.02 2.92 16 27 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.11 4.01 7.45 -2.91 -0.02 3.99 16 30 H 0.13 2.09 8.09 -2.39 -0.02 2.07 16 31 H 0.11 2.24 8.10 -2.38 -0.02 2.22 16 32 H 0.11 4.06 3.99 -2.39 -0.01 4.05 16 33 H 0.12 2.98 5.76 -2.39 -0.01 2.96 16 Total: -1.00 -76.69 305.34 -1.57 -78.27 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.33 Total: 29.73 kcal Atomic # 6 Polarization: -60.16 SS G_CDS: 3.10 Total: -57.06 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -0.59 Total: -94.59 kcal Atomic # 8 Polarization: -131.45 SS G_CDS: -6.08 Total: -137.54 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 141.87 SS G_CDS: -0.28 Total: 141.59 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -76.69 -1.57 -78.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.987 kcal (2) G-P(sol) polarization free energy of solvation -76.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds