Wall clock time and date at job start Tue Mar 31 2020 11:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00358 * 2 1 4 4 H 1.07993 * 120.00395 * 156.99552 * 3 2 1 5 5 C 1.38817 * 119.99486 * 336.72271 * 3 2 1 6 6 N 1.31615 * 119.99716 * 156.48713 * 5 3 2 7 7 Si 1.86801 * 119.99866 * 336.47888 * 5 3 2 8 8 H 1.48502 * 109.46746 * 84.84791 * 7 5 3 9 9 H 1.48500 * 109.47090 * 204.84462 * 7 5 3 10 10 H 1.48490 * 109.47504 * 324.84933 * 7 5 3 11 11 C 1.46504 * 119.99777 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.46819 * 269.99848 * 11 2 1 13 13 C 1.29630 * 122.33411 * 115.00405 * 12 11 2 14 14 S 1.75372 * 115.32411 * 179.97438 * 13 12 11 15 15 C 1.76774 * 102.39572 * 359.97438 * 14 13 12 16 16 C 1.34143 * 127.72294 * 180.02562 * 15 14 13 17 17 S 1.76780 * 127.72227 * 179.65561 * 16 15 14 18 18 C 1.75374 * 102.39207 * 179.91550 * 17 16 15 19 19 C 1.29629 * 115.32622 * 0.39819 * 18 17 16 20 20 S 1.75367 * 115.32538 * 359.74278 * 19 18 17 21 21 S 1.75371 * 122.33600 * 294.71107 * 12 11 2 22 22 H 1.09004 * 109.47029 * 94.43408 * 1 2 3 23 23 H 1.09003 * 109.47242 * 214.43474 * 1 2 3 24 24 H 1.08998 * 109.46780 * 334.43649 * 1 2 3 25 25 H 0.96999 * 119.99834 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.47524 * 29.99788 * 11 2 1 27 27 H 1.08997 * 109.46783 * 150.00446 * 11 2 1 28 28 H 1.07998 * 122.34116 * 359.95409 * 13 12 11 29 29 H 1.07996 * 122.33365 * 180.11638 * 18 17 16 30 30 H 1.07998 * 122.33650 * 179.71446 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2231 0.3655 5 6 1.5404 2.3391 -0.4751 6 7 1.9642 3.5195 -0.0761 7 14 0.1190 2.2155 -1.6809 8 1 -1.1490 2.0205 -0.9329 9 1 0.0361 3.4656 -2.4781 10 1 0.3398 1.0624 -2.5900 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.9227 -2.7773 1.9215 14 16 2.3387 -3.1085 3.5927 15 6 3.3980 -1.7520 3.9960 16 6 4.0082 -1.5066 5.1652 17 16 5.0742 -0.1545 5.5660 18 6 5.4852 -0.4824 7.2391 19 6 4.9585 -1.5561 7.7393 20 16 3.9323 -2.4671 6.6473 21 16 3.4787 -0.7946 2.5120 22 1 -0.3633 -0.0795 -1.0246 23 1 -0.3634 -0.8476 0.5811 24 1 -0.3633 0.9271 0.4434 25 1 1.5387 4.3254 -0.4084 26 1 1.6084 -2.0287 -0.5129 27 1 3.1499 -1.1386 -0.5133 28 1 1.2734 -3.4231 1.3490 29 1 6.1354 0.1627 7.8112 30 1 5.1394 -1.8680 8.7572 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209093828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:21 Heat of formation + Delta-G solvation = 101.787726 kcal Electronic energy + Delta-G solvation = -16692.070393 eV Core-core repulsion = 13959.934706 eV Total energy + Delta-G solvation = -2732.135687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.973 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -36.78422 -34.49894 -34.07400 -32.79702 -31.48784 -27.49284 -25.85690 -24.02038 -22.37778 -21.99800 -20.49102 -18.65994 -17.84747 -16.95997 -16.40503 -15.62918 -15.40769 -15.20370 -14.70503 -14.34220 -14.03193 -13.66377 -13.38868 -13.02569 -12.59994 -12.40356 -12.22647 -11.73408 -11.68956 -11.54129 -11.41060 -10.76416 -10.60568 -10.31644 -10.20571 -10.08545 -9.66147 -9.36832 -8.86025 -8.78230 -8.39037 -8.29411 -7.26614 -6.41635 -6.08660 -3.41693 0.26160 0.93788 1.15194 1.33669 1.38386 1.62442 1.83188 1.84312 2.03947 2.48945 3.24518 3.26888 3.42004 3.43876 4.43007 4.86332 4.92651 5.19580 5.25325 5.37039 5.55521 5.57563 5.66236 5.75835 6.09874 6.11684 6.28289 6.41711 6.60351 7.74102 8.16849 8.76019 9.56010 9.83320 11.05636 Molecular weight = 316.97amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.004163 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.468601 B = 6724.640548 C = 7699.653603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.594 5.594 3 C -0.271 4.271 4 H 0.093 0.907 5 C 0.033 3.967 6 N -0.891 5.891 7 Si 0.888 3.112 8 H -0.285 1.285 9 H -0.303 1.303 10 H -0.276 1.276 11 C 0.208 3.792 12 C -0.125 4.125 13 C -0.208 4.208 14 S 0.014 5.986 15 C -0.115 4.115 16 C -0.147 4.147 17 S 0.043 5.957 18 C -0.176 4.176 19 C -0.179 4.179 20 S 0.020 5.980 21 S 0.100 5.900 22 H 0.015 0.985 23 H 0.035 0.965 24 H 0.065 0.935 25 H 0.266 0.734 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.181 0.819 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -12.667 11.412 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.314 5.314 3 C -0.400 4.400 4 H 0.110 0.890 5 C -0.168 4.168 6 N -0.531 5.531 7 Si 0.718 3.282 8 H -0.212 1.212 9 H -0.231 1.231 10 H -0.202 1.202 11 C 0.075 3.925 12 C -0.254 4.254 13 C -0.353 4.353 14 S 0.267 5.733 15 C -0.362 4.362 16 C -0.396 4.396 17 S 0.295 5.705 18 C -0.321 4.321 19 C -0.325 4.325 20 S 0.270 5.730 21 S 0.357 5.643 22 H 0.033 0.967 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.195 0.805 29 H 0.198 0.802 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.074 -12.459 11.349 17.338 hybrid contribution -0.949 0.084 -0.456 1.056 sum 3.125 -12.375 10.893 16.780 Atomic orbital electron populations 1.21491 0.84048 1.01088 0.97954 1.44232 1.00998 1.01842 1.84360 1.18913 1.00236 0.83691 1.37132 0.88977 1.25143 0.98003 0.94871 0.98815 1.69888 1.43172 0.97398 1.42691 0.87000 0.82568 0.76068 0.82537 1.21213 1.23092 1.20226 1.19581 0.97976 0.88895 0.86019 1.25668 0.99402 0.96460 1.03870 1.24426 1.10006 1.03853 0.96994 1.83651 1.51690 1.27864 1.10095 1.24434 1.06674 1.04364 1.00710 1.23410 1.12424 1.05071 0.98705 1.84348 1.50828 1.28560 1.06790 1.24755 1.06483 1.02137 0.98737 1.24600 1.03706 0.99712 1.04478 1.83863 1.56053 1.32069 1.01015 1.85178 1.52184 1.29493 0.97446 0.96725 0.94671 0.91681 0.92447 0.90954 0.90171 0.80537 0.80173 0.80318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 8.33 59.85 0.50 2.57 16 2 N -0.59 -13.32 2.71 -182.50 -0.49 -13.82 16 3 C -0.27 -7.17 9.84 -15.06 -0.15 -7.32 16 4 H 0.09 2.61 7.89 -52.49 -0.41 2.20 16 5 C 0.03 0.91 5.17 -17.43 -0.09 0.82 16 6 N -0.89 -26.41 13.97 55.49 0.78 -25.63 16 7 Si 0.89 21.59 24.04 -169.99 -4.09 17.51 16 8 H -0.29 -6.67 6.37 56.52 0.36 -6.31 16 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 10 H -0.28 -6.60 6.90 56.52 0.39 -6.21 16 11 C 0.21 3.77 6.07 -5.19 -0.03 3.73 16 12 C -0.12 -2.17 5.80 -35.64 -0.21 -2.38 16 13 C -0.21 -3.15 10.33 29.40 0.30 -2.85 16 14 S 0.01 0.22 22.41 -100.14 -2.24 -2.03 16 15 C -0.12 -1.98 6.81 29.29 0.20 -1.78 16 16 C -0.15 -2.35 6.81 29.29 0.20 -2.15 16 17 S 0.04 0.64 22.41 -100.14 -2.24 -1.61 16 18 C -0.18 -1.88 10.68 29.40 0.31 -1.57 16 19 C -0.18 -1.85 10.68 29.40 0.31 -1.53 16 20 S 0.02 0.26 22.41 -100.14 -2.24 -1.99 16 21 S 0.10 1.90 21.95 -100.14 -2.20 -0.30 16 22 H 0.01 0.31 5.78 -51.93 -0.30 0.01 16 23 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 24 H 0.06 1.49 5.76 -51.93 -0.30 1.19 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 27 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 28 H 0.18 2.16 8.03 -52.49 -0.42 1.74 16 29 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -29.95 306.75 -9.48 -39.43 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -2.72 Total: -3.73 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 1.35 Total: -12.46 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.28 Total: -39.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.09 Total: 17.51 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -8.93 Total: -5.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.95 -9.48 -39.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209093828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.216 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds