Wall clock time and date at job start Tue Mar 31 2020 11:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00358 * 2 1 4 4 H 1.07993 * 120.00395 * 156.99552 * 3 2 1 5 5 C 1.38817 * 119.99486 * 336.72271 * 3 2 1 6 6 N 1.31615 * 119.99716 * 156.48713 * 5 3 2 7 7 Si 1.86801 * 119.99866 * 336.47888 * 5 3 2 8 8 H 1.48502 * 109.46746 * 84.84791 * 7 5 3 9 9 H 1.48500 * 109.47090 * 204.84462 * 7 5 3 10 10 H 1.48490 * 109.47504 * 324.84933 * 7 5 3 11 11 C 1.46504 * 119.99777 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.46819 * 269.99848 * 11 2 1 13 13 C 1.29630 * 122.33411 * 115.00405 * 12 11 2 14 14 S 1.75372 * 115.32411 * 179.97438 * 13 12 11 15 15 C 1.76774 * 102.39572 * 359.97438 * 14 13 12 16 16 C 1.34143 * 127.72294 * 180.02562 * 15 14 13 17 17 S 1.76780 * 127.72227 * 179.65561 * 16 15 14 18 18 C 1.75374 * 102.39207 * 179.91550 * 17 16 15 19 19 C 1.29629 * 115.32622 * 0.39819 * 18 17 16 20 20 S 1.75367 * 115.32538 * 359.74278 * 19 18 17 21 21 S 1.75371 * 122.33600 * 294.71107 * 12 11 2 22 22 H 1.09004 * 109.47029 * 94.43408 * 1 2 3 23 23 H 1.09003 * 109.47242 * 214.43474 * 1 2 3 24 24 H 1.08998 * 109.46780 * 334.43649 * 1 2 3 25 25 H 0.96999 * 119.99834 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.47524 * 29.99788 * 11 2 1 27 27 H 1.08997 * 109.46783 * 150.00446 * 11 2 1 28 28 H 1.07998 * 122.34116 * 359.95409 * 13 12 11 29 29 H 1.07996 * 122.33365 * 180.11638 * 18 17 16 30 30 H 1.07998 * 122.33650 * 179.71446 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2231 0.3655 5 6 1.5404 2.3391 -0.4751 6 7 1.9642 3.5195 -0.0761 7 14 0.1190 2.2155 -1.6809 8 1 -1.1490 2.0205 -0.9329 9 1 0.0361 3.4656 -2.4781 10 1 0.3398 1.0624 -2.5900 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.9227 -2.7773 1.9215 14 16 2.3387 -3.1085 3.5927 15 6 3.3980 -1.7520 3.9960 16 6 4.0082 -1.5066 5.1652 17 16 5.0742 -0.1545 5.5660 18 6 5.4852 -0.4824 7.2391 19 6 4.9585 -1.5561 7.7393 20 16 3.9323 -2.4671 6.6473 21 16 3.4787 -0.7946 2.5120 22 1 -0.3633 -0.0795 -1.0246 23 1 -0.3634 -0.8476 0.5811 24 1 -0.3633 0.9271 0.4434 25 1 1.5387 4.3254 -0.4084 26 1 1.6084 -2.0287 -0.5129 27 1 3.1499 -1.1386 -0.5133 28 1 1.2734 -3.4231 1.3490 29 1 6.1354 0.1627 7.8112 30 1 5.1394 -1.8680 8.7572 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209093828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:20 Heat of formation + Delta-G solvation = 84.640325 kcal Electronic energy + Delta-G solvation = -16692.813960 eV Core-core repulsion = 13959.934706 eV Total energy + Delta-G solvation = -2732.879254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.973 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.36577 -35.60654 -35.40220 -34.06920 -33.39365 -28.98255 -27.71338 -25.28666 -23.67103 -23.25512 -21.88005 -19.86424 -19.10174 -18.82782 -17.64563 -17.26160 -16.83852 -16.21098 -15.94482 -15.92699 -15.36766 -14.91379 -14.84456 -14.54976 -14.21666 -13.98119 -13.70554 -13.11546 -12.96243 -12.75632 -12.71586 -12.23297 -12.21775 -12.06959 -11.79380 -11.56503 -11.22522 -10.76823 -10.61480 -9.99885 -9.73744 -9.48776 -9.10295 -8.15818 -7.64874 -5.47355 -0.90356 -0.25031 -0.11822 0.19480 0.47288 0.52442 0.55813 0.66407 0.79831 1.34667 1.36631 1.44758 1.53208 2.03901 2.44157 3.06501 3.37908 4.06991 4.21251 4.32432 4.34699 4.50512 4.52774 4.54698 4.67888 4.68000 4.85336 4.95100 4.96010 5.82781 6.12707 6.86199 7.59567 7.90169 9.03216 Molecular weight = 316.97amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.004163 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.468601 B = 6724.640548 C = 7699.653603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.611 5.611 3 C -0.252 4.252 4 H 0.057 0.943 5 C -0.030 4.030 6 N -0.950 5.950 7 Si 0.950 3.050 8 H -0.270 1.270 9 H -0.316 1.316 10 H -0.264 1.264 11 C 0.211 3.789 12 C -0.141 4.141 13 C -0.181 4.181 14 S 0.039 5.961 15 C -0.136 4.136 16 C -0.143 4.143 17 S -0.014 6.014 18 C -0.166 4.166 19 C -0.166 4.166 20 S 0.022 5.978 21 S 0.021 5.979 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.218 0.782 29 H 0.220 0.780 30 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -15.859 13.215 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.333 5.333 3 C -0.381 4.381 4 H 0.075 0.925 5 C -0.226 4.226 6 N -0.595 5.595 7 Si 0.779 3.221 8 H -0.196 1.196 9 H -0.245 1.245 10 H -0.189 1.189 11 C 0.080 3.920 12 C -0.270 4.270 13 C -0.325 4.325 14 S 0.292 5.708 15 C -0.384 4.384 16 C -0.392 4.392 17 S 0.236 5.764 18 C -0.310 4.310 19 C -0.310 4.310 20 S 0.272 5.728 21 S 0.276 5.724 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.237 0.763 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.181 -15.709 13.180 20.751 hybrid contribution -0.463 0.852 -0.635 1.159 sum 2.718 -14.857 12.545 19.634 Atomic orbital electron populations 1.21503 0.83004 1.01237 0.98809 1.44281 1.01796 1.01915 1.85320 1.18788 0.98896 0.85463 1.34979 0.92546 1.25788 1.01337 0.94532 1.00914 1.70032 1.46094 0.98142 1.45262 0.85989 0.80276 0.75576 0.80255 1.19572 1.24549 1.18882 1.19770 0.97864 0.87927 0.86442 1.25057 1.01098 0.97412 1.03406 1.24881 1.07981 1.02691 0.96994 1.83471 1.51039 1.26588 1.09709 1.24350 1.09030 1.05043 0.99932 1.23852 1.10649 1.05091 0.99559 1.84643 1.51126 1.29446 1.11138 1.24982 1.07179 1.03062 0.95779 1.25046 1.01893 0.98636 1.05411 1.83860 1.56916 1.32106 0.99884 1.85248 1.54417 1.32310 1.00409 0.95722 0.91248 0.94316 0.93000 0.86829 0.91137 0.76591 0.76339 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.92 8.33 127.77 1.06 4.98 16 2 N -0.61 -27.11 2.71 -731.30 -1.98 -29.09 16 3 C -0.25 -13.82 9.84 84.03 0.83 -12.99 16 4 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 5 C -0.03 -1.74 5.17 84.86 0.44 -1.30 16 6 N -0.95 -59.56 13.97 21.65 0.30 -59.26 16 7 Si 0.95 45.43 24.04 68.60 1.65 47.07 16 8 H -0.27 -12.06 6.37 99.48 0.63 -11.43 16 9 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 10 H -0.26 -11.89 6.90 99.48 0.69 -11.21 16 11 C 0.21 7.33 6.07 85.63 0.52 7.85 16 12 C -0.14 -4.77 5.80 27.05 0.16 -4.61 16 13 C -0.18 -4.95 10.33 69.19 0.71 -4.23 16 14 S 0.04 1.12 22.41 -41.44 -0.93 0.20 16 15 C -0.14 -4.67 6.81 66.89 0.46 -4.21 16 16 C -0.14 -4.50 6.81 66.89 0.46 -4.05 16 17 S -0.01 -0.42 22.41 -41.43 -0.93 -1.35 16 18 C -0.17 -3.04 10.68 69.19 0.74 -2.31 16 19 C -0.17 -2.75 10.68 69.19 0.74 -2.01 16 20 S 0.02 0.53 22.41 -41.43 -0.93 -0.40 16 21 S 0.02 0.83 21.95 -41.44 -0.91 -0.08 16 22 H 0.02 0.94 5.78 -2.39 -0.01 0.93 16 23 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 24 H 0.04 1.73 5.76 -2.39 -0.01 1.72 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.11 2.98 7.92 -2.39 -0.02 2.96 16 27 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 28 H 0.22 4.13 8.03 -2.91 -0.02 4.10 16 29 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -70.07 306.75 3.46 -66.61 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: 1.08 Total: -0.82 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 6.11 Total: -22.88 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.68 Total: -88.35 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.65 Total: 47.07 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -3.70 Total: -1.63 kcal Total: -70.07 3.46 -66.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209093828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.253 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds