Wall clock time and date at job start Tue Mar 31 2020 11:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39091 * 120.56566 * 134.16189 * 3 2 1 5 5 C 1.39379 * 119.80471 * 180.29396 * 4 3 2 6 6 C 1.48005 * 119.50136 * 179.66366 * 5 4 3 7 7 C 1.39626 * 120.12824 * 180.02562 * 6 5 4 8 8 C 1.37889 * 119.89779 * 179.97438 * 7 6 5 9 9 C 1.38521 * 120.14216 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 119.87672 * 180.02562 * 9 8 7 11 11 C 1.38611 * 120.24555 * 0.02562 * 9 8 7 12 12 Cl 1.73607 * 119.94399 * 180.02562 * 11 9 8 13 13 C 1.38035 * 120.10744 * 359.75047 * 11 9 8 14 14 C 1.39983 * 121.00325 * 359.68938 * 5 4 3 15 15 C 1.36002 * 121.19330 * 359.97364 * 14 5 4 16 16 C 1.41045 * 120.10694 * 0.04665 * 15 14 5 17 17 C 1.40444 * 120.48860 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99528 * 208.74652 * 17 16 15 19 19 C 1.40299 * 120.00181 * 28.74425 * 17 16 15 20 20 N 1.30636 * 119.99933 * 197.54465 * 19 17 16 21 21 Si 1.86800 * 119.99914 * 17.54604 * 19 17 16 22 22 H 1.48496 * 109.47002 * 270.00026 * 21 19 17 23 23 H 1.48499 * 109.46998 * 29.99971 * 21 19 17 24 24 H 1.48491 * 109.46924 * 149.99901 * 21 19 17 25 25 H 1.07998 * 120.09769 * 359.97438 * 4 3 2 26 26 H 1.08005 * 120.04600 * 359.95367 * 7 6 5 27 27 H 1.08001 * 119.93132 * 179.97438 * 8 7 6 28 28 H 1.08003 * 120.07140 * 180.27631 * 13 11 9 29 29 H 1.07997 * 119.40475 * 180.02562 * 14 5 4 30 30 H 1.07998 * 119.95060 * 180.02562 * 15 14 5 31 31 H 0.96996 * 120.00068 * 355.44810 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.8353 -0.8592 5 6 4.6686 0.8186 -0.8502 6 6 5.4140 1.7042 -1.7725 7 6 6.8103 1.6976 -1.7749 8 6 7.5000 2.5242 -2.6365 9 6 6.8106 3.3602 -3.4995 10 17 7.6859 4.3975 -4.5819 11 6 5.4246 3.3714 -3.5021 12 17 4.5685 4.4217 -4.5875 13 6 4.7238 2.5448 -2.6471 14 6 5.3740 -0.0234 0.0175 15 6 4.7241 -0.8510 0.8791 16 6 3.3142 -0.8738 0.9106 17 6 2.6349 -1.7256 1.7967 18 1 1.6542 -2.0993 1.5415 19 6 3.2302 -2.0912 3.0134 20 7 2.7829 -3.1253 3.6747 21 14 4.6623 -1.0994 3.6878 22 1 5.9382 -1.6637 3.1793 23 1 4.5361 0.3136 3.2486 24 1 4.6509 -1.1595 5.1714 25 1 2.7455 1.4907 -1.5348 26 1 7.3492 1.0464 -1.1026 27 1 8.5800 2.5199 -2.6385 28 1 3.6438 2.5508 -2.6528 29 1 6.4539 -0.0151 0.0030 30 1 5.2885 -1.4920 1.5401 31 1 1.9985 -3.6005 3.3591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222352767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:00 Heat of formation + Delta-G solvation = 40.216073 kcal Electronic energy + Delta-G solvation = -19761.245983 eV Core-core repulsion = 16444.156114 eV Total energy + Delta-G solvation = -3317.089869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.53417 -38.00829 -36.46171 -36.43523 -35.40186 -34.47281 -32.05129 -31.19078 -30.23456 -29.18320 -25.56877 -23.68045 -22.39994 -21.69762 -21.03699 -18.72014 -18.05741 -16.94089 -15.77680 -15.47518 -15.15786 -14.65148 -14.39105 -14.02347 -13.98188 -13.63984 -13.30440 -12.96105 -12.82013 -12.35706 -12.06279 -11.94480 -11.83772 -11.81713 -11.62725 -11.31223 -11.19079 -11.06723 -10.83888 -10.70490 -10.48105 -10.28029 -9.89670 -9.55148 -8.99544 -8.79160 -8.22222 -8.03147 -7.55494 -5.11877 0.89447 1.22044 1.80216 1.91905 2.30118 2.30639 2.87811 3.04995 3.22926 3.51329 3.60350 3.61911 4.01018 4.22779 4.69613 4.89765 4.99297 5.12407 5.18658 5.31497 5.43709 5.48401 5.77593 5.86431 6.08179 6.09666 6.23538 6.30754 6.46012 6.69405 6.75177 6.88341 7.05467 7.12865 7.28983 7.36644 7.75463 7.85296 8.08802 8.50093 9.35339 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003484 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.215611 B = 8033.754569 C = 9231.281144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.294 3.706 3 C -0.172 4.172 4 C 0.016 3.984 5 C -0.220 4.220 6 C 0.042 3.958 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.070 4.070 10 Cl -0.070 7.070 11 C -0.012 4.012 12 Cl -0.064 7.064 13 C -0.130 4.130 14 C -0.021 4.021 15 C -0.241 4.241 16 C 0.131 3.869 17 C -0.451 4.451 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.765 5.765 21 Si 1.073 2.927 22 H -0.267 1.267 23 H -0.253 1.253 24 H -0.282 1.282 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 8.157 -7.743 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.017 4.017 3 C -0.178 4.178 4 C -0.005 4.005 5 C -0.221 4.221 6 C 0.042 3.958 7 C -0.149 4.149 8 C -0.103 4.103 9 C -0.097 4.097 10 Cl -0.041 7.041 11 C -0.039 4.039 12 Cl -0.035 7.035 13 C -0.149 4.149 14 C -0.040 4.040 15 C -0.259 4.259 16 C 0.125 3.875 17 C -0.477 4.477 18 H 0.106 0.894 19 C -0.189 4.189 20 N -0.383 5.383 21 Si 0.896 3.104 22 H -0.193 1.193 23 H -0.177 1.177 24 H -0.209 1.209 25 H 0.127 0.873 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.934 8.280 -6.657 14.545 hybrid contribution -0.890 -0.165 -1.502 1.754 sum 9.045 8.115 -8.160 14.637 Atomic orbital electron populations 1.81070 1.12566 1.11624 1.11768 1.25652 0.92608 0.91811 0.91633 1.16724 0.83465 1.07644 1.09943 1.20742 0.92842 0.93502 0.93397 1.17607 0.91809 1.06928 1.05748 1.18873 0.92485 0.92253 0.92216 1.21263 0.93552 1.00130 0.99955 1.20850 1.00138 0.94834 0.94503 1.20593 0.90100 0.99965 0.99075 1.98347 1.75998 1.66287 1.63513 1.20605 0.90327 0.96755 0.96203 1.98366 1.77014 1.65157 1.63010 1.21069 1.00597 0.96875 0.96367 1.20445 0.98231 0.92457 0.92868 1.20760 0.93716 1.05920 1.05541 1.18577 0.91296 0.87873 0.89757 1.21081 1.04515 1.20453 1.01619 0.89422 1.27830 1.02738 0.94458 0.93836 1.70441 1.18405 1.09640 1.39829 0.83603 0.73458 0.77386 0.75955 1.19308 1.17672 1.20877 0.87265 0.84462 0.84673 0.84306 0.87454 0.86417 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.18 18.54 41.84 0.78 -10.41 16 2 C 0.29 6.37 14.34 -22.47 -0.32 6.04 16 3 C -0.17 -3.52 5.93 -104.27 -0.62 -4.14 16 4 C 0.02 0.29 9.12 -38.84 -0.35 -0.07 16 5 C -0.22 -3.65 5.88 -104.82 -0.62 -4.27 16 6 C 0.04 0.62 5.88 -104.88 -0.62 0.00 16 7 C -0.13 -1.64 9.41 -39.19 -0.37 -2.01 16 8 C -0.08 -0.99 9.81 -39.60 -0.39 -1.38 16 9 C -0.07 -0.90 6.33 -39.34 -0.25 -1.15 16 10 Cl -0.07 -0.83 27.94 -51.86 -1.45 -2.28 16 11 C -0.01 -0.16 6.32 -39.52 -0.25 -0.41 16 12 Cl -0.06 -0.82 27.94 -51.86 -1.45 -2.27 16 13 C -0.13 -1.84 9.19 -39.16 -0.36 -2.20 16 14 C -0.02 -0.35 9.30 -39.73 -0.37 -0.72 16 15 C -0.24 -4.56 7.21 -39.32 -0.28 -4.85 16 16 C 0.13 2.79 5.30 -104.61 -0.55 2.23 16 17 C -0.45 -10.32 8.90 -37.98 -0.34 -10.66 16 18 H 0.09 2.16 7.61 -52.49 -0.40 1.76 16 19 C 0.04 0.82 5.42 -17.29 -0.09 0.72 16 20 N -0.77 -17.49 13.64 55.57 0.76 -16.73 16 21 Si 1.07 19.82 24.90 -169.99 -4.23 15.59 16 22 H -0.27 -4.48 6.44 56.52 0.36 -4.11 16 23 H -0.25 -4.60 7.02 56.52 0.40 -4.20 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H 0.11 1.71 6.13 -52.49 -0.32 1.39 16 26 H 0.14 1.47 6.13 -52.48 -0.32 1.15 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 1.86 6.15 -52.48 -0.32 1.54 16 29 H 0.11 1.44 6.09 -52.49 -0.32 1.12 16 30 H 0.12 2.15 4.39 -52.49 -0.23 1.92 16 31 H 0.30 6.64 8.72 -40.82 -0.36 6.28 16 LS Contribution 305.16 15.07 4.60 4.60 Total: -1.00 -23.14 305.16 -8.31 -31.45 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -1.53 Total: 2.90 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -5.78 Total: -22.84 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 1.53 Total: -27.14 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.23 Total: 15.59 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -2.90 Total: -4.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -23.14 -8.31 -31.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222352767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.669 kcal (2) G-P(sol) polarization free energy of solvation -23.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds