Wall clock time and date at job start Tue Mar 31 2020 11:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39091 * 120.56566 * 134.16189 * 3 2 1 5 5 C 1.39379 * 119.80471 * 180.29396 * 4 3 2 6 6 C 1.48005 * 119.50136 * 179.66366 * 5 4 3 7 7 C 1.39626 * 120.12824 * 180.02562 * 6 5 4 8 8 C 1.37889 * 119.89779 * 179.97438 * 7 6 5 9 9 C 1.38521 * 120.14216 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 119.87672 * 180.02562 * 9 8 7 11 11 C 1.38611 * 120.24555 * 0.02562 * 9 8 7 12 12 Cl 1.73607 * 119.94399 * 180.02562 * 11 9 8 13 13 C 1.38035 * 120.10744 * 359.75047 * 11 9 8 14 14 C 1.39983 * 121.00325 * 359.68938 * 5 4 3 15 15 C 1.36002 * 121.19330 * 359.97364 * 14 5 4 16 16 C 1.41045 * 120.10694 * 0.04665 * 15 14 5 17 17 C 1.40444 * 120.48860 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99528 * 208.74652 * 17 16 15 19 19 C 1.40299 * 120.00181 * 28.74425 * 17 16 15 20 20 N 1.30636 * 119.99933 * 197.54465 * 19 17 16 21 21 Si 1.86800 * 119.99914 * 17.54604 * 19 17 16 22 22 H 1.48496 * 109.47002 * 270.00026 * 21 19 17 23 23 H 1.48499 * 109.46998 * 29.99971 * 21 19 17 24 24 H 1.48491 * 109.46924 * 149.99901 * 21 19 17 25 25 H 1.07998 * 120.09769 * 359.97438 * 4 3 2 26 26 H 1.08005 * 120.04600 * 359.95367 * 7 6 5 27 27 H 1.08001 * 119.93132 * 179.97438 * 8 7 6 28 28 H 1.08003 * 120.07140 * 180.27631 * 13 11 9 29 29 H 1.07997 * 119.40475 * 180.02562 * 14 5 4 30 30 H 1.07998 * 119.95060 * 180.02562 * 15 14 5 31 31 H 0.96996 * 120.00068 * 355.44810 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.8353 -0.8592 5 6 4.6686 0.8186 -0.8502 6 6 5.4140 1.7042 -1.7725 7 6 6.8103 1.6976 -1.7749 8 6 7.5000 2.5242 -2.6365 9 6 6.8106 3.3602 -3.4995 10 17 7.6859 4.3975 -4.5819 11 6 5.4246 3.3714 -3.5021 12 17 4.5685 4.4217 -4.5875 13 6 4.7238 2.5448 -2.6471 14 6 5.3740 -0.0234 0.0175 15 6 4.7241 -0.8510 0.8791 16 6 3.3142 -0.8738 0.9106 17 6 2.6349 -1.7256 1.7967 18 1 1.6542 -2.0993 1.5415 19 6 3.2302 -2.0912 3.0134 20 7 2.7829 -3.1253 3.6747 21 14 4.6623 -1.0994 3.6878 22 1 5.9382 -1.6637 3.1793 23 1 4.5361 0.3136 3.2486 24 1 4.6509 -1.1595 5.1714 25 1 2.7455 1.4907 -1.5348 26 1 7.3492 1.0464 -1.1026 27 1 8.5800 2.5199 -2.6385 28 1 3.6438 2.5508 -2.6528 29 1 6.4539 -0.0151 0.0030 30 1 5.2885 -1.4920 1.5401 31 1 1.9985 -3.6005 3.3591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222352767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:57 Heat of formation + Delta-G solvation = 31.759056 kcal Electronic energy + Delta-G solvation = -19761.612707 eV Core-core repulsion = 16444.156114 eV Total energy + Delta-G solvation = -3317.456593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70649 -39.37224 -37.55213 -37.44340 -37.06073 -35.97467 -33.39923 -32.43840 -31.51004 -30.48732 -27.00247 -24.94942 -23.68008 -22.97013 -22.41955 -20.28470 -19.34916 -18.11474 -16.99984 -16.75008 -16.42697 -16.05444 -15.80567 -15.23865 -15.05766 -14.89744 -14.70821 -14.48005 -14.30148 -13.88998 -13.61678 -13.31518 -13.03588 -12.85775 -12.82844 -12.74891 -12.48099 -12.25725 -11.99390 -11.87871 -11.75436 -11.67877 -11.41498 -10.95125 -10.25309 -9.84443 -9.68585 -9.61428 -8.94494 -6.75895 -0.24748 0.20158 0.26396 0.91223 0.92139 1.29870 1.41865 1.60674 1.81590 1.88471 2.11646 2.19359 2.51694 2.79136 3.37931 3.45900 3.70579 3.89975 4.08965 4.15338 4.28210 4.34537 4.57499 4.75198 4.78930 4.85847 4.95879 5.11817 5.21092 5.25644 5.34064 5.51798 5.61846 5.77254 5.83700 5.91850 6.13678 6.33743 6.53156 6.79950 7.71330 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003484 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.215611 B = 8033.754569 C = 9231.281144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.299 3.701 3 C -0.194 4.194 4 C 0.010 3.990 5 C -0.192 4.192 6 C 0.017 3.983 7 C -0.114 4.114 8 C -0.081 4.081 9 C -0.065 4.065 10 Cl -0.060 7.060 11 C -0.028 4.028 12 Cl -0.062 7.062 13 C -0.129 4.129 14 C -0.013 4.013 15 C -0.248 4.248 16 C 0.127 3.873 17 C -0.501 4.501 18 H 0.046 0.954 19 C 0.013 3.987 20 N -0.803 5.803 21 Si 1.098 2.902 22 H -0.230 1.230 23 H -0.248 1.248 24 H -0.285 1.285 25 H 0.128 0.872 26 H 0.165 0.835 27 H 0.167 0.833 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.128 0.872 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 10.402 -9.514 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.010 4.010 3 C -0.199 4.199 4 C -0.011 4.011 5 C -0.193 4.193 6 C 0.017 3.983 7 C -0.132 4.132 8 C -0.099 4.099 9 C -0.093 4.093 10 Cl -0.031 7.031 11 C -0.055 4.055 12 Cl -0.033 7.033 13 C -0.148 4.148 14 C -0.031 4.031 15 C -0.267 4.267 16 C 0.122 3.878 17 C -0.528 4.528 18 H 0.064 0.936 19 C -0.206 4.206 20 N -0.422 5.422 21 Si 0.915 3.085 22 H -0.154 1.154 23 H -0.172 1.172 24 H -0.211 1.211 25 H 0.145 0.855 26 H 0.183 0.817 27 H 0.184 0.816 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.146 0.854 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.324 10.527 -8.463 19.688 hybrid contribution -2.050 -0.506 -1.385 2.525 sum 12.274 10.022 -9.849 18.657 Atomic orbital electron populations 1.81037 1.13448 1.12832 1.12983 1.26064 0.93117 0.91015 0.90846 1.16983 0.82819 1.08876 1.11264 1.20975 0.93712 0.93165 0.93203 1.17947 0.91381 1.05487 1.04495 1.18809 0.93514 0.93096 0.92903 1.21578 0.92519 0.99557 0.99531 1.21203 1.01712 0.93666 0.93349 1.20903 0.90061 0.99554 0.98769 1.98363 1.75595 1.65964 1.63176 1.20700 0.90888 0.97248 0.96669 1.98371 1.77062 1.65014 1.62857 1.21147 1.00875 0.96609 0.96139 1.20906 1.00571 0.90647 0.90978 1.20935 0.92469 1.06798 1.06457 1.18778 0.92736 0.87167 0.89162 1.20854 1.03805 1.24286 1.03880 0.93602 1.28886 1.04121 0.94206 0.93368 1.70519 1.19342 1.11448 1.40918 0.83400 0.72942 0.76664 0.75519 1.15437 1.17168 1.21143 0.85466 0.81731 0.81556 0.84283 0.82882 0.85442 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.99 18.54 19.00 0.35 -24.64 16 2 C 0.30 13.53 14.34 88.33 1.27 14.80 16 3 C -0.19 -7.98 5.93 -19.63 -0.12 -8.10 16 4 C 0.01 0.34 9.12 22.75 0.21 0.54 16 5 C -0.19 -5.64 5.88 -19.99 -0.12 -5.76 16 6 C 0.02 0.42 5.88 -20.03 -0.12 0.31 16 7 C -0.11 -2.15 9.41 22.52 0.21 -1.94 16 8 C -0.08 -1.41 9.81 22.25 0.22 -1.20 16 9 C -0.07 -1.39 6.33 22.43 0.14 -1.25 16 10 Cl -0.06 -1.18 27.94 -2.72 -0.08 -1.26 16 11 C -0.03 -0.65 6.32 22.31 0.14 -0.51 16 12 Cl -0.06 -1.43 27.94 -2.72 -0.08 -1.50 16 13 C -0.13 -3.18 9.19 22.54 0.21 -2.97 16 14 C -0.01 -0.36 9.30 22.17 0.21 -0.16 16 15 C -0.25 -8.81 7.21 22.44 0.16 -8.65 16 16 C 0.13 5.47 5.30 -19.86 -0.11 5.37 16 17 C -0.50 -24.51 8.90 23.31 0.21 -24.30 16 18 H 0.05 2.52 7.61 -2.91 -0.02 2.50 16 19 C 0.01 0.60 5.42 85.37 0.46 1.06 16 20 N -0.80 -39.31 13.64 21.89 0.30 -39.01 16 21 Si 1.10 39.15 24.90 68.60 1.71 40.86 16 22 H -0.23 -6.82 6.44 99.48 0.64 -6.18 16 23 H -0.25 -8.52 7.02 99.48 0.70 -7.82 16 24 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 25 H 0.13 3.76 6.13 -2.91 -0.02 3.74 16 26 H 0.17 2.23 6.13 -2.91 -0.02 2.21 16 27 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.14 3.36 6.15 -2.91 -0.02 3.34 16 29 H 0.15 3.00 6.09 -2.91 -0.02 2.98 16 30 H 0.13 4.28 4.39 -2.91 -0.01 4.27 16 31 H 0.28 14.05 8.72 -92.71 -0.81 13.24 16 Total: -1.00 -53.85 305.16 6.29 -47.56 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.11 Total: 10.75 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 2.98 Total: -32.76 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.65 Total: -63.65 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.71 Total: 40.86 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.15 Total: -2.76 kcal Total: -53.85 6.29 -47.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222352767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.322 kcal (2) G-P(sol) polarization free energy of solvation -53.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds