Wall clock time and date at job start Tue Mar 31 2020 11:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39589 * 120.45292 * 232.38416 * 3 2 1 5 5 C 1.37715 * 120.18517 * 179.97438 * 4 3 2 6 6 C 1.39820 * 121.16846 * 0.02562 * 5 4 3 7 7 C 1.48314 * 119.53596 * 179.97438 * 6 5 4 8 8 C 1.39416 * 120.10141 * 0.02562 * 7 6 5 9 9 C 1.37963 * 119.90873 * 179.97438 * 8 7 6 10 10 C 1.38453 * 120.12732 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 119.89266 * 180.02562 * 10 9 8 12 12 C 1.38540 * 120.21401 * 359.97438 * 10 9 8 13 13 Cl 1.73600 * 119.95807 * 180.02562 * 12 10 9 14 14 C 1.38117 * 120.08321 * 359.76289 * 12 10 9 15 15 C 1.38606 * 120.93054 * 359.97438 * 6 5 4 16 16 C 1.40606 * 119.73208 * 359.75391 * 15 6 5 17 17 C 1.40843 * 120.55383 * 180.27628 * 16 15 6 18 18 H 1.08003 * 120.00329 * 204.61782 * 17 16 15 19 19 C 1.40230 * 120.00041 * 24.62259 * 17 16 15 20 20 N 1.30662 * 120.00323 * 17.32417 * 19 17 16 21 21 Si 1.86799 * 120.00305 * 197.32610 * 19 17 16 22 22 H 1.48503 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47510 * 119.99629 * 21 19 17 24 24 H 1.48497 * 109.47400 * 239.99708 * 21 19 17 25 25 H 1.07994 * 119.90721 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.41278 * 179.97438 * 5 4 3 27 27 H 1.07992 * 120.04526 * 359.97426 * 8 7 6 28 28 H 1.08002 * 119.93935 * 179.97438 * 9 8 7 29 29 H 1.08007 * 120.05953 * 180.25748 * 14 12 10 30 30 H 1.08009 * 120.13483 * 180.02562 * 15 6 5 31 31 H 0.96995 * 120.00466 * 184.51518 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.7354 0.9532 5 6 4.6522 0.7317 0.9484 6 6 5.3706 -0.0003 -0.0019 7 6 6.8533 0.0219 0.0261 8 6 7.5233 0.7680 0.9947 9 6 8.9026 0.7854 1.0174 10 6 9.6222 0.0632 0.0806 11 17 11.3577 0.0889 0.1152 12 6 8.9618 -0.6808 -0.8836 13 17 9.8707 -1.5843 -2.0545 14 6 7.5812 -0.7088 -0.9110 15 6 4.7166 -0.7464 -0.9698 16 6 3.3111 -0.7746 -0.9970 17 6 2.6289 -1.5315 -1.9692 18 1 1.6218 -1.2639 -2.2533 19 6 3.2571 -2.6328 -2.5683 20 7 4.3118 -3.1662 -2.0113 21 14 2.5861 -3.3374 -4.1630 22 1 1.3934 -2.5597 -4.5846 23 1 3.6286 -3.2562 -5.2175 24 1 2.2027 -4.7568 -3.9544 25 1 2.7408 1.3084 1.6964 26 1 5.1868 1.3050 1.6914 27 1 6.9633 1.3314 1.7263 28 1 9.4221 1.3635 1.7673 29 1 7.0667 -1.2922 -1.6603 30 1 5.2844 -1.3074 -1.6975 31 1 4.7850 -3.8853 -2.4582 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222353057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:44 Heat of formation + Delta-G solvation = 36.645486 kcal Electronic energy + Delta-G solvation = -19935.056488 eV Core-core repulsion = 16617.811787 eV Total energy + Delta-G solvation = -3317.244701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69432 -39.17136 -37.56243 -37.49159 -36.88437 -35.81770 -33.29727 -32.20658 -31.43038 -29.76769 -27.59065 -24.95893 -24.15422 -22.35954 -22.23732 -19.61968 -18.87199 -18.30825 -17.29655 -16.74310 -16.51816 -15.73880 -15.41469 -15.11600 -15.08083 -14.85602 -14.52970 -14.36697 -14.06035 -13.52900 -13.45777 -13.15208 -13.05488 -12.90905 -12.86743 -12.84052 -12.69635 -12.27458 -12.05766 -11.99928 -11.87493 -11.65066 -11.33054 -11.16912 -10.20172 -9.86023 -9.50672 -8.94756 -8.68873 -6.53033 -0.42279 0.14660 0.68016 0.85837 1.00780 1.22801 1.36502 1.47838 1.50297 2.05078 2.13020 2.21580 2.65330 2.78940 3.60076 3.68220 3.69903 3.80433 4.15954 4.22731 4.30225 4.42850 4.75099 4.79391 4.93077 4.95234 5.07289 5.12352 5.23318 5.35734 5.51176 5.65666 5.79903 5.93597 6.07026 6.15479 6.43597 6.65530 6.77001 6.98122 8.06977 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.004280 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.845979 B = 6540.177740 C = 8452.511870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.304 3.696 3 C -0.206 4.206 4 C -0.026 4.026 5 C -0.221 4.221 6 C -0.020 4.020 7 C -0.022 4.022 8 C -0.090 4.090 9 C -0.089 4.089 10 C -0.046 4.046 11 Cl -0.052 7.052 12 C -0.037 4.037 13 Cl -0.058 7.058 14 C -0.103 4.103 15 C -0.162 4.162 16 C 0.128 3.872 17 C -0.463 4.463 18 H 0.067 0.933 19 C 0.049 3.951 20 N -0.784 5.784 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.251 1.251 24 H -0.264 1.264 25 H 0.131 0.869 26 H 0.145 0.855 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.147 4.407 3.010 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.005 4.005 3 C -0.212 4.212 4 C -0.046 4.046 5 C -0.240 4.240 6 C -0.021 4.021 7 C -0.023 4.023 8 C -0.108 4.108 9 C -0.107 4.107 10 C -0.073 4.073 11 Cl -0.023 7.023 12 C -0.064 4.064 13 Cl -0.029 7.029 14 C -0.122 4.122 15 C -0.181 4.181 16 C 0.122 3.878 17 C -0.491 4.491 18 H 0.085 0.915 19 C -0.171 4.171 20 N -0.407 5.407 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.175 1.175 24 H -0.189 1.189 25 H 0.148 0.852 26 H 0.163 0.837 27 H 0.186 0.814 28 H 0.192 0.808 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.778 4.080 2.925 14.664 hybrid contribution 0.032 -0.843 -1.099 1.386 sum 13.810 3.237 1.825 14.301 Atomic orbital electron populations 1.81002 1.13336 1.14315 1.12525 1.26064 0.93032 0.90571 0.90798 1.17271 0.82901 1.16003 1.05024 1.20738 0.94257 0.94906 0.94734 1.20586 0.92771 1.07289 1.03372 1.18689 0.90594 0.96813 0.95988 1.19100 0.92582 0.95802 0.94781 1.21643 0.93561 0.97741 0.97849 1.21275 0.93513 0.98181 0.97756 1.20947 0.85693 1.02110 0.98588 1.98367 1.08268 1.97561 1.98058 1.20694 0.91938 0.99340 0.94458 1.98366 1.74028 1.73308 1.57215 1.21219 0.91071 0.99817 1.00104 1.21433 0.93311 1.02289 1.01032 1.18622 0.92144 0.88437 0.88564 1.19864 1.01350 1.09528 1.18366 0.91450 1.26628 0.94583 0.95191 1.00742 1.69694 1.15779 1.19073 1.36142 0.85319 0.79744 0.78480 0.77454 1.19137 1.17495 1.18902 0.85160 0.83720 0.81359 0.80837 0.85004 0.85844 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.47 18.54 19.00 0.35 -25.12 16 2 C 0.30 14.05 14.28 88.33 1.26 15.32 16 3 C -0.21 -9.04 5.95 -19.54 -0.12 -9.16 16 4 C -0.03 -0.93 9.74 22.47 0.22 -0.71 16 5 C -0.22 -7.17 9.37 22.53 0.21 -6.96 16 6 C -0.02 -0.72 5.86 -20.13 -0.12 -0.83 16 7 C -0.02 -0.68 5.88 -20.04 -0.12 -0.79 16 8 C -0.09 -2.04 9.41 22.49 0.21 -1.82 16 9 C -0.09 -1.77 9.81 22.26 0.22 -1.55 16 10 C -0.05 -1.10 6.33 22.39 0.14 -0.95 16 11 Cl -0.05 -1.10 27.94 -2.72 -0.08 -1.17 16 12 C -0.04 -1.03 6.32 22.31 0.14 -0.89 16 13 Cl -0.06 -1.56 27.94 -2.72 -0.08 -1.63 16 14 C -0.10 -3.25 9.19 22.51 0.21 -3.04 16 15 C -0.16 -6.99 8.06 22.94 0.18 -6.81 16 16 C 0.13 6.03 5.73 -19.90 -0.11 5.92 16 17 C -0.46 -22.79 8.58 23.39 0.20 -22.59 16 18 H 0.07 3.45 7.37 -2.91 -0.02 3.43 16 19 C 0.05 2.21 5.16 85.35 0.44 2.65 16 20 N -0.78 -35.12 10.95 21.87 0.24 -34.88 16 21 Si 0.97 35.08 29.60 68.60 2.03 37.11 16 22 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 26 H 0.15 3.44 6.09 -2.91 -0.02 3.42 16 27 H 0.17 2.85 6.13 -2.91 -0.02 2.84 16 28 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.13 4.58 6.15 -2.91 -0.02 4.56 16 30 H 0.12 5.48 4.24 -2.91 -0.01 5.47 16 31 H 0.30 12.00 8.30 -92.71 -0.77 11.23 16 Total: -1.00 -53.22 310.34 6.66 -46.56 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.22 Total: 11.35 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 2.97 Total: -32.22 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.59 Total: -60.00 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.15 Total: -2.81 kcal Total: -53.22 6.66 -46.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222353057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.207 kcal (2) G-P(sol) polarization free energy of solvation -53.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds