Wall clock time and date at job start Tue Mar 31 2020 11:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39579 * 120.45870 * 330.17210 * 3 2 1 5 5 C 1.37711 * 120.18827 * 179.97438 * 4 3 2 6 6 C 1.39819 * 121.16968 * 0.04333 * 5 4 3 7 7 C 1.48333 * 119.53430 * 179.97438 * 6 5 4 8 8 C 1.39367 * 120.11040 * 179.72199 * 7 6 5 9 9 C 1.38127 * 119.88331 * 179.79067 * 8 7 6 10 10 Cl 1.73602 * 119.94357 * 180.25131 * 9 8 7 11 11 C 1.38423 * 120.11292 * 0.48705 * 9 8 7 12 12 C 1.38424 * 120.22618 * 359.74490 * 11 9 8 13 13 Cl 1.73600 * 119.94144 * 180.02562 * 12 11 9 14 14 C 1.38131 * 120.11021 * 0.02562 * 12 11 9 15 15 C 1.38598 * 120.93051 * 0.02562 * 6 5 4 16 16 C 1.40612 * 119.72912 * 359.66732 * 15 6 5 17 17 C 1.40840 * 120.55298 * 180.32375 * 16 15 6 18 18 H 1.08001 * 120.00457 * 204.66895 * 17 16 15 19 19 C 1.40240 * 119.99795 * 24.66275 * 17 16 15 20 20 N 1.30662 * 120.00123 * 17.28687 * 19 17 16 21 21 Si 1.86802 * 119.99979 * 197.28449 * 19 17 16 22 22 H 1.48493 * 109.47376 * 89.99961 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00367 * 21 19 17 24 24 H 1.48504 * 109.47057 * 330.00183 * 21 19 17 25 25 H 1.08000 * 119.90316 * 359.97296 * 4 3 2 26 26 H 1.08003 * 119.41696 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.05308 * 0.02562 * 8 7 6 28 28 H 1.08001 * 119.88443 * 179.76773 * 11 9 8 29 29 H 1.08000 * 120.05055 * 179.97438 * 14 12 11 30 30 H 1.07998 * 120.13037 * 180.02562 * 15 6 5 31 31 H 0.96995 * 120.00029 * 184.65554 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.0428 0.5984 5 6 4.6531 -1.0368 0.5948 6 6 5.3707 0.0045 -0.0017 7 6 6.8536 -0.0255 0.0159 8 6 7.5808 1.0032 -0.5801 9 6 8.9615 0.9727 -0.5572 10 17 9.8689 2.2567 -1.2934 11 6 9.6230 -0.0822 0.0474 12 6 8.9053 -1.1089 0.6366 13 17 9.7424 -2.4280 1.3934 14 6 7.5242 -1.0854 0.6232 15 6 4.7159 1.0648 -0.6082 16 6 3.3103 1.0944 -0.6324 17 6 2.6271 2.1601 -1.2499 18 1 1.6202 2.4048 -0.9455 19 6 3.2545 2.9036 -2.2600 20 7 4.3096 2.4249 -2.8641 21 14 2.5817 4.5783 -2.7419 22 1 3.2263 5.6280 -1.9126 23 1 2.8704 4.8338 -4.1760 24 1 1.1136 4.6044 -2.5202 25 1 2.7423 -1.8572 1.0657 26 1 5.1884 -1.8508 1.0611 27 1 7.0656 1.8247 -1.0557 28 1 10.7027 -0.1042 0.0599 29 1 6.9653 -1.8871 1.0828 30 1 5.2830 1.8622 -1.0653 31 1 4.7834 2.9664 -3.5146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222593485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:51 Heat of formation + Delta-G solvation = 43.321558 kcal Electronic energy + Delta-G solvation = -19920.572778 eV Core-core repulsion = 16603.617573 eV Total energy + Delta-G solvation = -3316.955205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.51725 -37.70766 -36.70194 -36.21886 -35.18358 -34.26814 -32.06073 -30.78840 -29.92603 -28.59250 -25.97735 -23.68948 -22.85671 -20.94826 -20.86387 -18.08537 -17.38780 -16.95793 -15.85285 -15.53177 -15.21652 -14.38684 -14.28529 -13.87864 -13.77996 -13.47119 -12.93177 -12.78538 -12.46095 -12.30652 -12.06016 -11.82274 -11.76425 -11.58780 -11.57622 -11.31007 -11.22062 -11.01441 -10.90029 -10.76154 -10.60722 -10.16936 -9.84553 -9.62719 -9.04567 -8.63432 -7.92043 -7.45982 -7.20541 -4.84310 0.88905 1.14626 1.85682 2.15310 2.33867 2.53712 2.87468 2.91675 2.96964 3.54607 3.62785 3.83587 4.20428 4.35606 4.77890 5.05131 5.12709 5.28371 5.32298 5.36989 5.45823 5.67692 5.90224 6.05786 6.21375 6.23310 6.35196 6.58870 6.66074 6.73162 6.86149 7.04485 7.32219 7.51229 7.58601 7.71974 8.05545 8.29470 8.38651 8.73621 9.63523 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.004578 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.290489 B = 6114.350701 C = 8352.467563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.298 3.702 3 C -0.181 4.181 4 C -0.026 4.026 5 C -0.235 4.235 6 C -0.028 4.028 7 C 0.011 3.989 8 C -0.100 4.100 9 C -0.020 4.020 10 Cl -0.068 7.068 11 C -0.122 4.122 12 C -0.022 4.022 13 Cl -0.071 7.071 14 C -0.106 4.106 15 C -0.134 4.134 16 C 0.147 3.853 17 C -0.424 4.424 18 H 0.088 0.912 19 C 0.077 3.923 20 N -0.763 5.763 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.257 1.257 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.149 0.851 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.883 -1.533 2.743 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.011 4.011 3 C -0.187 4.187 4 C -0.047 4.047 5 C -0.254 4.254 6 C -0.029 4.029 7 C 0.011 3.989 8 C -0.118 4.118 9 C -0.047 4.047 10 Cl -0.039 7.039 11 C -0.141 4.141 12 C -0.049 4.049 13 Cl -0.042 7.042 14 C -0.125 4.125 15 C -0.153 4.153 16 C 0.142 3.858 17 C -0.451 4.451 18 H 0.106 0.894 19 C -0.146 4.146 20 N -0.385 5.385 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.180 1.180 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.151 0.849 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.413 -1.516 2.490 11.780 hybrid contribution 0.490 0.672 -0.355 0.904 sum 11.903 -0.845 2.135 12.123 Atomic orbital electron populations 1.81033 1.12734 1.10949 1.13823 1.25774 0.92717 0.91452 0.91197 1.16985 0.83312 1.00210 1.18238 1.20381 0.93506 0.95134 0.95650 1.20109 0.93133 1.01011 1.11158 1.18343 0.88582 0.96399 0.99556 1.18955 0.93887 0.92060 0.94017 1.21447 0.91245 1.00005 0.99129 1.20595 0.92055 0.91452 1.00568 1.98366 1.74558 1.49547 1.81415 1.20749 1.00438 0.92851 1.00109 1.20564 0.92372 0.91127 1.00811 1.98360 1.78313 1.46966 1.80537 1.21299 0.91573 0.99529 1.00076 1.21455 0.93927 0.98399 1.01495 1.18335 0.91086 0.88818 0.87601 1.19826 1.01635 1.10110 1.13570 0.89429 1.26097 0.94422 0.99958 0.94169 1.69690 1.15066 1.36107 1.17651 0.86167 0.81078 0.80526 0.78611 1.18502 1.19645 1.18036 0.87945 0.87971 0.83384 0.84493 0.83931 0.84927 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.87 18.54 41.84 0.78 -11.09 16 2 C 0.30 6.75 14.28 -22.47 -0.32 6.43 16 3 C -0.18 -3.95 5.95 -104.13 -0.62 -4.57 16 4 C -0.03 -0.50 9.74 -39.27 -0.38 -0.88 16 5 C -0.23 -4.24 9.37 -39.18 -0.37 -4.60 16 6 C -0.03 -0.52 5.86 -105.02 -0.62 -1.14 16 7 C 0.01 0.19 5.87 -104.91 -0.62 -0.43 16 8 C -0.10 -1.57 9.19 -39.20 -0.36 -1.93 16 9 C -0.02 -0.28 6.31 -39.55 -0.25 -0.53 16 10 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 16 11 C -0.12 -1.56 9.60 -39.44 -0.38 -1.94 16 12 C -0.02 -0.29 6.31 -39.55 -0.25 -0.54 16 13 Cl -0.07 -0.81 28.95 -51.86 -1.50 -2.32 16 14 C -0.11 -1.52 9.19 -39.20 -0.36 -1.88 16 15 C -0.13 -2.82 8.06 -38.55 -0.31 -3.13 16 16 C 0.15 3.35 5.73 -104.67 -0.60 2.75 16 17 C -0.42 -9.85 8.58 -37.85 -0.32 -10.17 16 18 H 0.09 2.08 7.37 -52.49 -0.39 1.69 16 19 C 0.08 1.64 5.16 -17.30 -0.09 1.56 16 20 N -0.76 -16.42 10.95 55.56 0.61 -15.81 16 21 Si 0.91 16.49 29.60 -169.99 -5.03 11.46 16 22 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 23 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 25 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.10 1.57 6.10 -52.48 -0.32 1.25 16 27 H 0.15 2.42 6.15 -52.49 -0.32 2.10 16 28 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.14 1.88 6.13 -52.49 -0.32 1.56 16 30 H 0.13 2.78 4.24 -52.49 -0.22 2.56 16 31 H 0.29 5.66 8.30 -40.82 -0.34 5.32 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -23.23 311.92 -9.35 -32.58 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -1.55 Total: 3.84 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -5.85 Total: -21.00 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 1.38 Total: -26.90 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -3.00 Total: -4.68 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -23.23 -9.35 -32.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222593485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.899 kcal (2) G-P(sol) polarization free energy of solvation -23.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds