Wall clock time and date at job start Tue Mar 31 2020 11:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39579 * 120.45870 * 330.17210 * 3 2 1 5 5 C 1.37711 * 120.18827 * 179.97438 * 4 3 2 6 6 C 1.39819 * 121.16968 * 0.04333 * 5 4 3 7 7 C 1.48333 * 119.53430 * 179.97438 * 6 5 4 8 8 C 1.39367 * 120.11040 * 179.72199 * 7 6 5 9 9 C 1.38127 * 119.88331 * 179.79067 * 8 7 6 10 10 Cl 1.73602 * 119.94357 * 180.25131 * 9 8 7 11 11 C 1.38423 * 120.11292 * 0.48705 * 9 8 7 12 12 C 1.38424 * 120.22618 * 359.74490 * 11 9 8 13 13 Cl 1.73600 * 119.94144 * 180.02562 * 12 11 9 14 14 C 1.38131 * 120.11021 * 0.02562 * 12 11 9 15 15 C 1.38598 * 120.93051 * 0.02562 * 6 5 4 16 16 C 1.40612 * 119.72912 * 359.66732 * 15 6 5 17 17 C 1.40840 * 120.55298 * 180.32375 * 16 15 6 18 18 H 1.08001 * 120.00457 * 204.66895 * 17 16 15 19 19 C 1.40240 * 119.99795 * 24.66275 * 17 16 15 20 20 N 1.30662 * 120.00123 * 17.28687 * 19 17 16 21 21 Si 1.86802 * 119.99979 * 197.28449 * 19 17 16 22 22 H 1.48493 * 109.47376 * 89.99961 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00367 * 21 19 17 24 24 H 1.48504 * 109.47057 * 330.00183 * 21 19 17 25 25 H 1.08000 * 119.90316 * 359.97296 * 4 3 2 26 26 H 1.08003 * 119.41696 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.05308 * 0.02562 * 8 7 6 28 28 H 1.08001 * 119.88443 * 179.76773 * 11 9 8 29 29 H 1.08000 * 120.05055 * 179.97438 * 14 12 11 30 30 H 1.07998 * 120.13037 * 180.02562 * 15 6 5 31 31 H 0.96995 * 120.00029 * 184.65554 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.0428 0.5984 5 6 4.6531 -1.0368 0.5948 6 6 5.3707 0.0045 -0.0017 7 6 6.8536 -0.0255 0.0159 8 6 7.5808 1.0032 -0.5801 9 6 8.9615 0.9727 -0.5572 10 17 9.8689 2.2567 -1.2934 11 6 9.6230 -0.0822 0.0474 12 6 8.9053 -1.1089 0.6366 13 17 9.7424 -2.4280 1.3934 14 6 7.5242 -1.0854 0.6232 15 6 4.7159 1.0648 -0.6082 16 6 3.3103 1.0944 -0.6324 17 6 2.6271 2.1601 -1.2499 18 1 1.6202 2.4048 -0.9455 19 6 3.2545 2.9036 -2.2600 20 7 4.3096 2.4249 -2.8641 21 14 2.5817 4.5783 -2.7419 22 1 3.2263 5.6280 -1.9126 23 1 2.8704 4.8338 -4.1760 24 1 1.1136 4.6044 -2.5202 25 1 2.7423 -1.8572 1.0657 26 1 5.1884 -1.8508 1.0611 27 1 7.0656 1.8247 -1.0557 28 1 10.7027 -0.1042 0.0599 29 1 6.9653 -1.8871 1.0828 30 1 5.2830 1.8622 -1.0653 31 1 4.7834 2.9664 -3.5146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222593485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:48 Heat of formation + Delta-G solvation = 36.668868 kcal Electronic energy + Delta-G solvation = -19920.861260 eV Core-core repulsion = 16603.617573 eV Total energy + Delta-G solvation = -3317.243687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.73526 -39.17615 -37.71806 -37.37247 -36.86193 -35.83653 -33.42846 -32.07803 -31.35482 -29.97582 -27.58754 -25.05717 -24.11008 -22.33739 -22.30229 -19.62822 -18.91203 -18.26344 -17.21928 -16.74995 -16.56753 -15.68474 -15.56858 -15.19507 -14.99563 -14.98158 -14.52506 -14.42518 -13.97003 -13.53697 -13.45717 -13.30677 -13.11529 -13.02336 -12.88757 -12.81487 -12.65747 -12.23862 -12.10237 -11.91295 -11.89665 -11.67392 -11.37573 -11.17222 -10.32425 -9.72357 -9.52236 -8.97881 -8.74085 -6.53698 -0.38925 0.02500 0.68740 0.81224 1.00045 1.28602 1.37327 1.47893 1.51114 2.04479 2.13504 2.19096 2.64554 2.75122 3.55638 3.64628 3.69983 3.98097 3.99135 4.17908 4.23467 4.46332 4.49850 4.74834 4.93752 4.98395 5.05643 5.10081 5.20166 5.31481 5.44092 5.57514 5.77141 5.92019 6.04691 6.13857 6.41831 6.64660 6.75620 6.97404 8.07034 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.004578 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.290489 B = 6114.350701 C = 8352.467563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.304 3.696 3 C -0.206 4.206 4 C -0.025 4.025 5 C -0.225 4.225 6 C -0.019 4.019 7 C -0.012 4.012 8 C -0.107 4.107 9 C -0.024 4.024 10 Cl -0.057 7.057 11 C -0.107 4.107 12 C -0.023 4.023 13 Cl -0.050 7.050 14 C -0.098 4.098 15 C -0.158 4.158 16 C 0.128 3.872 17 C -0.462 4.462 18 H 0.068 0.932 19 C 0.050 3.950 20 N -0.783 5.783 21 Si 0.971 3.029 22 H -0.251 1.251 23 H -0.261 1.261 24 H -0.271 1.271 25 H 0.129 0.871 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.127 0.873 31 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.401 -2.560 3.377 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.004 4.004 3 C -0.212 4.212 4 C -0.045 4.045 5 C -0.244 4.244 6 C -0.020 4.020 7 C -0.013 4.013 8 C -0.125 4.125 9 C -0.051 4.051 10 Cl -0.028 7.028 11 C -0.126 4.126 12 C -0.050 4.050 13 Cl -0.021 7.021 14 C -0.117 4.117 15 C -0.177 4.177 16 C 0.123 3.877 17 C -0.490 4.490 18 H 0.086 0.914 19 C -0.171 4.171 20 N -0.406 5.406 21 Si 0.791 3.209 22 H -0.175 1.175 23 H -0.185 1.185 24 H -0.195 1.195 25 H 0.147 0.853 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.179 0.821 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.948 -2.557 3.130 14.522 hybrid contribution -0.069 0.851 -0.476 0.978 sum 13.879 -1.706 2.654 14.233 Atomic orbital electron populations 1.81006 1.13303 1.11844 1.14971 1.26037 0.92994 0.90799 0.90585 1.17252 0.82938 1.01346 1.19687 1.20705 0.94113 0.94846 0.94838 1.20539 0.92893 1.01272 1.09698 1.18630 0.90327 0.95443 0.97633 1.18816 0.92541 0.93637 0.96315 1.21382 0.92173 0.99658 0.99319 1.20615 0.91509 0.92196 1.00783 1.98371 1.74041 1.49172 1.81250 1.21043 1.01652 0.91748 0.98182 1.20605 0.92129 0.91719 1.00515 1.98375 1.77750 1.45869 1.80072 1.21396 0.92264 0.98901 0.99127 1.21421 0.93292 0.99630 1.03345 1.18618 0.92117 0.89092 0.87868 1.19857 1.01376 1.12154 1.15568 0.91382 1.26638 0.94612 1.02297 0.93574 1.69687 1.15706 1.37157 1.18021 0.85339 0.79482 0.77194 0.78866 1.17539 1.18463 1.19500 0.85278 0.84437 0.84863 0.82084 0.82504 0.85527 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.56 18.54 19.00 0.35 -25.20 16 2 C 0.30 14.16 14.28 88.33 1.26 15.42 16 3 C -0.21 -9.14 5.95 -19.55 -0.12 -9.25 16 4 C -0.02 -0.91 9.74 22.47 0.22 -0.69 16 5 C -0.23 -7.66 9.37 22.53 0.21 -7.45 16 6 C -0.02 -0.71 5.86 -20.12 -0.12 -0.83 16 7 C -0.01 -0.39 5.87 -20.05 -0.12 -0.51 16 8 C -0.11 -3.27 9.19 22.52 0.21 -3.06 16 9 C -0.02 -0.62 6.31 22.29 0.14 -0.48 16 10 Cl -0.06 -1.36 28.95 -2.72 -0.08 -1.44 16 11 C -0.11 -2.40 9.60 22.36 0.21 -2.18 16 12 C -0.02 -0.52 6.31 22.29 0.14 -0.38 16 13 Cl -0.05 -0.96 28.95 -2.72 -0.08 -1.04 16 14 C -0.10 -2.53 9.19 22.51 0.21 -2.33 16 15 C -0.16 -6.83 8.06 22.94 0.18 -6.64 16 16 C 0.13 6.07 5.73 -19.90 -0.11 5.95 16 17 C -0.46 -22.57 8.58 23.39 0.20 -22.37 16 18 H 0.07 3.46 7.37 -2.91 -0.02 3.44 16 19 C 0.05 2.21 5.16 85.35 0.44 2.65 16 20 N -0.78 -34.61 10.95 21.88 0.24 -34.37 16 21 Si 0.97 34.62 29.60 68.60 2.03 36.65 16 22 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 23 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 25 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 26 H 0.14 3.68 6.10 -2.91 -0.02 3.66 16 27 H 0.13 4.46 6.15 -2.91 -0.02 4.44 16 28 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.16 3.51 6.13 -2.91 -0.02 3.49 16 30 H 0.13 5.54 4.24 -2.91 -0.01 5.53 16 31 H 0.30 11.85 8.30 -92.71 -0.77 11.08 16 Total: -1.00 -51.03 311.92 6.64 -44.39 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.22 Total: 13.16 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 2.96 Total: -32.15 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.59 Total: -59.57 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 2.03 Total: 36.65 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.16 Total: -2.48 kcal Total: -51.03 6.64 -44.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222593485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.056 kcal (2) G-P(sol) polarization free energy of solvation -51.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds