Wall clock time and date at job start Tue Mar 31 2020 11:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48506 * 109.46925 * 239.99784 * 3 2 1 5 5 H 1.48504 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47647 * 119.99925 * 3 2 1 7 7 C 1.38814 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99788 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64880 * 359.96416 * 9 7 2 11 11 C 1.54917 * 104.83002 * 155.91318 * 10 9 7 12 12 C 1.55151 * 101.58025 * 37.01304 * 11 10 9 13 13 H 1.09000 * 110.72429 * 82.86540 * 12 11 10 14 14 O 1.42908 * 110.71926 * 206.13791 * 12 11 10 15 15 C 1.35609 * 116.99799 * 210.00052 * 14 12 11 16 16 N 1.30459 * 126.36482 * 0.02646 * 15 14 12 17 17 O 1.21288 * 110.16254 * 180.02562 * 16 15 14 18 18 C 1.33644 * 109.94058 * 359.97438 * 17 16 15 19 19 C 1.50700 * 126.49050 * 180.02562 * 18 17 16 20 20 Br 1.96605 * 109.46966 * 269.97612 * 19 18 17 21 21 N 1.31084 * 107.03090 * 359.73312 * 18 17 16 22 22 C 1.47021 * 125.64668 * 180.02562 * 9 7 2 23 23 H 0.96992 * 120.00536 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.36865 * 37.07811 * 10 9 7 25 25 H 1.08994 * 110.46657 * 274.79959 * 10 9 7 26 26 H 1.08998 * 111.00193 * 155.08783 * 11 10 9 27 27 H 1.09004 * 111.00194 * 278.93638 * 11 10 9 28 28 H 1.09000 * 109.46782 * 29.97541 * 19 18 17 29 29 H 1.08992 * 109.47528 * 149.97649 * 19 18 17 30 30 H 1.08996 * 109.88310 * 300.43590 * 22 9 7 31 31 H 1.09000 * 109.88323 * 61.59984 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0008 11 6 -0.4015 -3.9327 -0.6105 12 6 0.7786 -4.7524 -0.0251 13 1 0.5461 -5.0977 0.9823 14 8 1.1007 -5.8539 -0.8767 15 6 1.6099 -6.9621 -0.2839 16 7 1.8352 -7.1231 0.9910 17 8 2.2940 -8.2265 1.1984 18 6 2.4093 -8.8959 0.0475 19 6 2.9358 -10.2973 -0.1254 20 35 4.8787 -10.2358 -0.4197 21 7 1.9719 -8.1051 -0.9021 22 6 1.9320 -3.7274 0.0016 23 1 -0.4850 0.8399 -0.0004 24 1 -0.5993 -1.7592 -0.6152 25 1 -0.5289 -2.4858 1.0184 26 1 -1.3588 -4.3330 -0.2768 27 1 -0.3519 -3.8990 -1.6989 28 1 2.7224 -10.8788 0.7716 29 1 2.4529 -10.7636 -0.9840 30 1 2.5585 -3.8514 -0.8816 31 1 2.5283 -3.8637 0.9038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223176830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:00 Heat of formation + Delta-G solvation = 54.756338 kcal Electronic energy + Delta-G solvation = -18470.870083 eV Core-core repulsion = 15224.257708 eV Total energy + Delta-G solvation = -3246.612375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.016 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.82577 -40.82509 -38.38260 -36.76592 -34.69658 -34.15058 -31.97101 -31.31690 -29.35467 -28.52098 -26.75134 -25.39201 -23.88585 -22.29890 -21.71949 -19.97152 -19.56820 -19.11818 -18.08823 -16.94331 -16.71716 -16.51270 -15.84721 -15.57877 -14.97358 -14.91343 -14.46837 -14.41133 -13.90610 -13.65530 -13.36724 -13.07024 -12.78213 -12.70820 -12.48535 -12.21287 -12.10866 -11.94221 -11.85665 -11.58557 -11.20315 -11.00669 -10.82959 -10.61365 -9.04533 -7.86535 -5.33336 -0.40733 0.56902 0.99693 1.15580 1.45141 1.48614 1.55223 1.55839 2.43422 2.71108 2.94358 3.24642 3.46022 3.51848 3.73507 3.84509 3.87337 4.04209 4.38341 4.42701 4.47460 4.54216 4.68621 4.78445 4.82778 5.35205 5.45143 5.64150 5.78297 6.18827 6.95161 6.99951 7.63248 8.25779 9.15908 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.002793 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.004330 B =10023.804471 C =10670.565933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.987 3.013 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.079 0.921 9 N -0.621 5.621 10 C 0.156 3.844 11 C -0.121 4.121 12 C 0.093 3.907 13 H 0.097 0.903 14 O -0.269 6.269 15 C 0.347 3.653 16 N -0.430 5.430 17 O 0.101 5.899 18 C 0.198 3.802 19 C 0.015 3.985 20 Br -0.121 7.121 21 N -0.477 5.477 22 C 0.122 3.878 23 H 0.253 0.747 24 H 0.089 0.911 25 H 0.004 0.996 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.186 0.814 29 H 0.175 0.825 30 H 0.028 0.972 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -27.030 0.583 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.349 5.349 10 C 0.031 3.969 11 C -0.159 4.159 12 C 0.036 3.964 13 H 0.115 0.885 14 O -0.171 6.171 15 C 0.040 3.960 16 N -0.158 5.158 17 O 0.043 5.957 18 C -0.023 4.023 19 C -0.101 4.101 20 Br -0.041 7.041 21 N -0.220 5.220 22 C -0.004 4.004 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.022 0.978 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.204 0.796 29 H 0.193 0.807 30 H 0.046 0.954 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.631 -25.922 0.346 26.529 hybrid contribution 0.088 1.143 0.228 1.169 sum 5.719 -24.778 0.574 25.436 Atomic orbital electron populations 1.69954 1.06163 1.25693 1.57631 1.25673 0.96770 1.01014 1.01718 0.85046 0.77170 0.78204 0.78225 1.20247 1.21328 1.20358 1.19395 0.91050 0.83409 1.44181 0.90315 1.44620 1.02849 1.00134 1.87269 1.21820 0.83895 0.93562 0.97595 1.23129 0.96251 0.94985 1.01583 1.23605 0.96418 0.82498 0.93839 0.88542 1.86184 1.76450 1.19821 1.34639 1.23684 0.97331 0.89921 0.85071 1.75038 1.23091 1.00807 1.16887 1.85280 1.58813 1.17911 1.33662 1.28784 0.95018 0.98682 0.79808 1.23511 0.88460 0.84705 1.13465 1.97604 1.09800 1.98993 1.97730 1.71762 1.19632 1.00297 1.30303 1.21635 0.94538 0.85805 0.98395 0.93771 0.89306 0.97844 0.87809 0.90404 0.79617 0.80712 0.95446 0.95437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.85 10.09 21.65 0.22 -55.63 16 2 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 3 Si 0.99 45.77 29.55 68.60 2.03 47.80 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.57 10.27 84.03 0.86 -13.71 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -33.51 3.39 -691.99 -2.35 -35.86 16 10 C 0.16 7.76 5.89 86.86 0.51 8.27 16 11 C -0.12 -4.70 6.81 31.99 0.22 -4.48 16 12 C 0.09 3.62 3.36 31.78 0.11 3.73 16 13 H 0.10 3.60 7.30 -2.39 -0.02 3.58 16 14 O -0.27 -10.06 9.93 -89.20 -0.89 -10.95 16 15 C 0.35 11.54 8.94 180.32 1.61 13.15 16 16 N -0.43 -13.41 11.11 -183.23 -2.04 -15.45 16 17 O 0.10 2.37 11.30 74.84 0.85 3.22 16 18 C 0.20 3.77 7.82 88.36 0.69 4.46 16 19 C 0.01 0.11 7.23 71.24 0.52 0.62 16 20 Br -0.12 -1.61 33.92 -20.37 -0.69 -2.30 16 21 N -0.48 -13.16 11.57 -426.10 -4.93 -18.08 16 22 C 0.12 5.63 7.02 86.73 0.61 6.24 16 23 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 24 H 0.09 4.94 5.88 -2.39 -0.01 4.93 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 27 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 28 H 0.19 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.18 0.45 8.14 -2.39 -0.02 0.44 16 30 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.06 291.22 -1.05 -72.11 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: 1.16 Total: -0.25 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.59 Total: 15.40 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -9.09 Total: -125.02 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.04 Total: -7.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -0.69 Total: -2.30 kcal Total: -71.06 -1.05 -72.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223176830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.867 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds