Wall clock time and date at job start Tue Mar 31 2020 11:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99727 * 2 1 4 4 H 1.48506 * 109.47394 * 274.14160 * 3 2 1 5 5 H 1.48506 * 109.47278 * 34.14109 * 3 2 1 6 6 H 1.48501 * 109.47383 * 154.13910 * 3 2 1 7 7 C 1.38812 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99555 * 170.42828 * 7 2 1 9 9 N 1.36934 * 120.00126 * 350.41981 * 7 2 1 10 10 C 1.47421 * 125.64644 * 349.98240 * 9 7 2 11 11 C 1.54912 * 104.83421 * 204.09420 * 10 9 7 12 12 C 1.55165 * 101.57926 * 322.99065 * 11 10 9 13 13 H 1.08995 * 110.87275 * 277.06740 * 12 11 10 14 14 O 1.42897 * 110.71794 * 153.85911 * 12 11 10 15 15 C 1.35609 * 116.99884 * 155.02317 * 14 12 11 16 16 N 1.30457 * 126.36027 * 0.03181 * 15 14 12 17 17 O 1.21301 * 110.15909 * 179.97438 * 16 15 14 18 18 C 1.33631 * 109.93998 * 0.02562 * 17 16 15 19 19 C 1.50704 * 126.48489 * 179.97438 * 18 17 16 20 20 Br 1.96597 * 109.47040 * 270.02213 * 19 18 17 21 21 N 1.31077 * 107.03361 * 359.97438 * 18 17 16 22 22 C 1.47023 * 125.65041 * 169.94523 * 9 7 2 23 23 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.37186 * 322.93274 * 10 9 7 25 25 H 1.09004 * 110.36660 * 85.25966 * 10 9 7 26 26 H 1.08996 * 111.00488 * 204.92345 * 11 10 9 27 27 H 1.08995 * 111.00417 * 81.06427 * 11 10 9 28 28 H 1.08996 * 109.47046 * 30.02244 * 19 18 17 29 29 H 1.09000 * 109.47341 * 150.02031 * 19 18 17 30 30 H 1.08995 * 109.88155 * 59.55344 * 22 9 7 31 31 H 1.09001 * 110.00482 * 298.46949 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4101 2.0971 -1.3964 5 1 1.4941 2.6259 0.7858 6 1 3.5887 1.4167 0.6107 7 6 2.0103 -1.2021 -0.0005 8 1 3.0791 -1.2085 -0.1561 9 7 1.3400 -2.3799 0.1963 10 6 -0.0650 -2.5077 0.6237 11 6 -0.1539 -3.9076 1.2810 12 6 0.7934 -4.7378 0.3750 13 1 0.2749 -5.0764 -0.5219 14 8 1.3354 -5.8480 1.0931 15 6 1.7326 -6.9191 0.3624 16 7 1.6692 -7.0366 -0.9353 17 8 2.1042 -8.1154 -1.2791 18 6 2.4975 -8.8107 -0.2078 19 6 3.0936 -10.1948 -0.2071 20 35 1.6559 -11.5274 -0.0588 21 7 2.2668 -8.0610 0.8424 22 6 1.9022 -3.7263 0.0156 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3133 -1.7320 1.3482 25 1 -0.7304 -2.4503 -0.2378 26 1 -1.1720 -4.2946 1.2400 27 1 0.2113 -3.8811 2.3076 28 1 3.6426 -10.3544 -1.1351 29 1 3.7730 -10.2975 0.6391 30 1 2.7573 -3.8628 0.6775 31 1 2.2098 -3.8660 -1.0207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223176831.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:10 Heat of formation + Delta-G solvation = 77.619065 kcal Electronic energy + Delta-G solvation = -18462.720878 eV Core-core repulsion = 15217.099905 eV Total energy + Delta-G solvation = -3245.620973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.016 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.69225 -39.33896 -36.69219 -35.62453 -33.63025 -32.29888 -31.15158 -29.39578 -27.96810 -27.47938 -24.82777 -24.14300 -22.64314 -20.45225 -20.22593 -18.76986 -18.36660 -17.13946 -16.72695 -15.69940 -15.20987 -14.80551 -14.42369 -14.32786 -13.96139 -13.74953 -13.22975 -12.59727 -12.51220 -12.04859 -11.79618 -11.51187 -11.19087 -10.98045 -10.84696 -10.71980 -10.59903 -10.49993 -10.46807 -10.14083 -10.01538 -9.79338 -9.33080 -8.67845 -6.92482 -5.83052 -3.16933 0.36249 1.37699 2.22966 2.28392 2.37651 3.36376 3.42021 3.44516 3.73143 4.09502 4.32378 4.43970 4.63379 5.06455 5.12226 5.16189 5.38167 5.47249 5.57678 5.61726 6.09367 6.24362 6.34437 6.42809 6.51635 7.16894 7.34016 7.43888 7.68205 8.03420 8.14558 9.09362 9.70345 10.35623 11.30399 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.054079 B = 0.002545 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.637156 B =10999.751074 C =11252.459535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.175 3.825 11 C -0.136 4.136 12 C 0.076 3.924 13 H 0.088 0.912 14 O -0.259 6.259 15 C 0.371 3.629 16 N -0.411 5.411 17 O 0.092 5.908 18 C 0.174 3.826 19 C 0.010 3.990 20 Br -0.104 7.104 21 N -0.454 5.454 22 C 0.121 3.879 23 H 0.255 0.745 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.035 0.965 31 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -25.483 -0.645 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.019 3.981 13 H 0.106 0.894 14 O -0.160 6.160 15 C 0.064 3.936 16 N -0.140 5.140 17 O 0.036 5.964 18 C -0.048 4.048 19 C -0.107 4.107 20 Br -0.025 7.025 21 N -0.198 5.198 22 C -0.005 4.005 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.052 0.948 31 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.286 -24.828 -0.362 25.047 hybrid contribution 0.734 1.088 -0.252 1.336 sum 4.019 -23.740 -0.615 24.086 Atomic orbital electron populations 1.69925 1.05022 1.25488 1.56088 1.24848 0.95694 0.97938 1.01700 0.86070 0.78762 0.83128 0.77590 1.21481 1.21459 1.20497 1.19023 0.91238 0.82403 1.43364 0.90450 1.44339 1.09480 0.99337 1.79431 1.21482 0.86024 0.90182 0.97317 1.23280 0.96952 0.97580 0.99692 1.23941 0.95775 0.82487 0.95855 0.89372 1.86252 1.75908 1.21789 1.32098 1.23486 0.95705 0.89849 0.84602 1.75078 1.24022 1.00934 1.13986 1.85322 1.57156 1.19704 1.34216 1.27808 0.97948 0.97336 0.81680 1.22936 0.94919 0.82131 1.10701 1.97562 1.51692 1.54027 1.99178 1.71738 1.18800 1.01534 1.27739 1.21636 0.94210 0.86344 0.98337 0.93485 0.90146 0.94826 0.90929 0.90385 0.83916 0.83410 0.94762 0.95086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.68 55.49 0.59 -26.17 16 2 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 22.03 29.56 -169.99 -5.03 17.01 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.57 10.24 -15.06 -0.15 -6.73 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 9 N -0.60 -15.69 3.39 -170.08 -0.58 -16.27 16 10 C 0.17 4.22 5.42 -2.53 -0.01 4.21 16 11 C -0.14 -2.64 6.81 -24.58 -0.17 -2.81 16 12 C 0.08 1.47 3.29 -24.89 -0.08 1.39 16 13 H 0.09 1.68 7.44 -51.93 -0.39 1.29 16 14 O -0.26 -4.87 9.93 -18.53 -0.18 -5.05 16 15 C 0.37 6.32 8.94 -90.55 -0.81 5.51 16 16 N -0.41 -6.68 11.19 27.82 0.31 -6.37 16 17 O 0.09 1.18 11.30 18.13 0.20 1.38 16 18 C 0.17 1.88 7.82 -13.00 -0.10 1.78 16 19 C 0.01 0.06 7.23 36.01 0.26 0.32 16 20 Br -0.10 -0.77 33.92 -68.01 -2.31 -3.07 16 21 N -0.45 -6.61 11.57 -13.62 -0.16 -6.77 16 22 C 0.12 2.72 7.02 -3.06 -0.02 2.70 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.08 2.12 6.94 -51.93 -0.36 1.76 16 25 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.15 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -32.31 292.38 -7.16 -39.47 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -3.24 Total: -4.71 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.18 Total: 6.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.17 Total: -55.58 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.02 Total: -3.67 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.31 Total: -3.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.31 -7.16 -39.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223176831.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.093 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds