Wall clock time and date at job start Tue Mar 31 2020 11:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99727 * 2 1 4 4 H 1.48506 * 109.47394 * 274.14160 * 3 2 1 5 5 H 1.48506 * 109.47278 * 34.14109 * 3 2 1 6 6 H 1.48501 * 109.47383 * 154.13910 * 3 2 1 7 7 C 1.38812 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99555 * 170.42828 * 7 2 1 9 9 N 1.36934 * 120.00126 * 350.41981 * 7 2 1 10 10 C 1.47421 * 125.64644 * 349.98240 * 9 7 2 11 11 C 1.54912 * 104.83421 * 204.09420 * 10 9 7 12 12 C 1.55165 * 101.57926 * 322.99065 * 11 10 9 13 13 H 1.08995 * 110.87275 * 277.06740 * 12 11 10 14 14 O 1.42897 * 110.71794 * 153.85911 * 12 11 10 15 15 C 1.35609 * 116.99884 * 155.02317 * 14 12 11 16 16 N 1.30457 * 126.36027 * 0.03181 * 15 14 12 17 17 O 1.21301 * 110.15909 * 179.97438 * 16 15 14 18 18 C 1.33631 * 109.93998 * 0.02562 * 17 16 15 19 19 C 1.50704 * 126.48489 * 179.97438 * 18 17 16 20 20 Br 1.96597 * 109.47040 * 270.02213 * 19 18 17 21 21 N 1.31077 * 107.03361 * 359.97438 * 18 17 16 22 22 C 1.47023 * 125.65041 * 169.94523 * 9 7 2 23 23 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.37186 * 322.93274 * 10 9 7 25 25 H 1.09004 * 110.36660 * 85.25966 * 10 9 7 26 26 H 1.08996 * 111.00488 * 204.92345 * 11 10 9 27 27 H 1.08995 * 111.00417 * 81.06427 * 11 10 9 28 28 H 1.08996 * 109.47046 * 30.02244 * 19 18 17 29 29 H 1.09000 * 109.47341 * 150.02031 * 19 18 17 30 30 H 1.08995 * 109.88155 * 59.55344 * 22 9 7 31 31 H 1.09001 * 110.00482 * 298.46949 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4101 2.0971 -1.3964 5 1 1.4941 2.6259 0.7858 6 1 3.5887 1.4167 0.6107 7 6 2.0103 -1.2021 -0.0005 8 1 3.0791 -1.2085 -0.1561 9 7 1.3400 -2.3799 0.1963 10 6 -0.0650 -2.5077 0.6237 11 6 -0.1539 -3.9076 1.2810 12 6 0.7934 -4.7378 0.3750 13 1 0.2749 -5.0764 -0.5219 14 8 1.3354 -5.8480 1.0931 15 6 1.7326 -6.9191 0.3624 16 7 1.6692 -7.0366 -0.9353 17 8 2.1042 -8.1154 -1.2791 18 6 2.4975 -8.8107 -0.2078 19 6 3.0936 -10.1948 -0.2071 20 35 1.6559 -11.5274 -0.0588 21 7 2.2668 -8.0610 0.8424 22 6 1.9022 -3.7263 0.0156 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3133 -1.7320 1.3482 25 1 -0.7304 -2.4503 -0.2378 26 1 -1.1720 -4.2946 1.2400 27 1 0.2113 -3.8811 2.3076 28 1 3.6426 -10.3544 -1.1351 29 1 3.7730 -10.2975 0.6391 30 1 2.7573 -3.8628 0.6775 31 1 2.2098 -3.8660 -1.0207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223176831.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:06 Heat of formation + Delta-G solvation = 52.011021 kcal Electronic energy + Delta-G solvation = -18463.831326 eV Core-core repulsion = 15217.099905 eV Total energy + Delta-G solvation = -3246.731421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.016 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -46.82113 -40.83352 -38.37565 -36.75898 -34.69197 -34.15526 -31.96862 -31.30490 -29.40234 -28.51671 -26.74195 -25.38278 -23.88739 -22.34372 -21.72323 -19.98137 -19.52688 -19.07116 -18.09517 -16.89680 -16.80863 -16.52033 -15.89293 -15.52476 -14.98727 -14.90009 -14.46574 -14.39520 -13.96079 -13.69413 -13.40856 -12.96582 -12.77527 -12.72556 -12.49499 -12.25499 -12.07383 -11.95941 -11.83427 -11.70567 -11.20168 -11.00268 -10.78579 -10.61554 -9.01532 -7.97037 -5.34310 -0.40466 0.57248 0.98583 1.15888 1.44656 1.46299 1.56360 1.56749 2.43164 2.72111 2.94610 3.23483 3.44578 3.50237 3.72152 3.84382 3.87152 4.04017 4.38067 4.42367 4.47981 4.52983 4.69047 4.79279 4.81647 5.32204 5.43214 5.56352 5.77492 6.08442 6.95660 6.97138 7.61221 8.26529 9.15204 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.054079 B = 0.002545 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.637156 B =10999.751074 C =11252.459535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.056 4.056 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.255 4.255 8 H 0.078 0.922 9 N -0.620 5.620 10 C 0.180 3.820 11 C -0.120 4.120 12 C 0.094 3.906 13 H 0.093 0.907 14 O -0.268 6.268 15 C 0.348 3.652 16 N -0.430 5.430 17 O 0.100 5.900 18 C 0.197 3.803 19 C 0.014 3.986 20 Br -0.117 7.117 21 N -0.476 5.476 22 C 0.122 3.878 23 H 0.253 0.747 24 H 0.053 0.947 25 H 0.013 0.987 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.030 0.970 31 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -27.100 -0.740 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.095 0.905 9 N -0.348 5.348 10 C 0.055 3.945 11 C -0.158 4.158 12 C 0.037 3.963 13 H 0.111 0.889 14 O -0.170 6.170 15 C 0.040 3.960 16 N -0.158 5.158 17 O 0.043 5.957 18 C -0.023 4.023 19 C -0.102 4.102 20 Br -0.038 7.038 21 N -0.219 5.219 22 C -0.004 4.004 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.202 0.798 29 H 0.192 0.808 30 H 0.048 0.952 31 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.341 -26.486 -0.451 26.844 hybrid contribution 0.481 1.435 -0.273 1.538 sum 4.822 -25.051 -0.724 25.521 Atomic orbital electron populations 1.70104 1.06344 1.26050 1.56690 1.25708 0.96634 1.01168 1.01507 0.85016 0.77770 0.78638 0.77539 1.21044 1.21380 1.19477 1.19365 0.91659 0.83725 1.43603 0.90459 1.44621 1.10289 1.00216 1.79636 1.21280 0.84862 0.92335 0.96050 1.23099 0.98938 0.94569 0.99232 1.23567 0.94367 0.82331 0.95988 0.88873 1.86172 1.76399 1.22119 1.32302 1.23671 0.97143 0.90113 0.85063 1.75069 1.24511 1.02413 1.13814 1.85283 1.56904 1.19026 1.34505 1.28775 0.95354 0.98129 0.80058 1.23495 0.94222 0.78284 1.14209 1.97589 1.52888 1.54042 1.99258 1.71753 1.19839 1.01262 1.29083 1.21662 0.95132 0.85747 0.97852 0.93766 0.92905 0.96929 0.87684 0.89950 0.79802 0.80842 0.95193 0.95652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 10.68 21.65 0.23 -55.93 16 2 C -0.06 -3.20 5.40 84.86 0.46 -2.74 16 3 Si 0.98 45.62 29.56 68.60 2.03 47.64 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.26 -14.67 10.24 84.03 0.86 -13.81 16 8 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 9 N -0.62 -33.17 3.39 -692.00 -2.35 -35.52 16 10 C 0.18 8.86 5.42 86.86 0.47 9.33 16 11 C -0.12 -4.57 6.81 31.99 0.22 -4.35 16 12 C 0.09 3.63 3.29 31.78 0.10 3.73 16 13 H 0.09 3.50 7.44 -2.39 -0.02 3.48 16 14 O -0.27 -9.88 9.93 -89.20 -0.89 -10.77 16 15 C 0.35 11.51 8.94 180.32 1.61 13.12 16 16 N -0.43 -13.53 11.19 -183.22 -2.05 -15.58 16 17 O 0.10 2.39 11.30 74.94 0.85 3.23 16 18 C 0.20 3.78 7.82 88.36 0.69 4.48 16 19 C 0.01 0.10 7.23 71.24 0.52 0.62 16 20 Br -0.12 -1.45 33.92 -20.37 -0.69 -2.14 16 21 N -0.48 -13.09 11.57 -426.11 -4.93 -18.02 16 22 C 0.12 5.54 7.02 86.73 0.61 6.15 16 23 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 24 H 0.05 2.87 6.94 -2.39 -0.02 2.85 16 25 H 0.01 0.67 8.07 -2.38 -0.02 0.65 16 26 H 0.10 3.32 8.14 -2.39 -0.02 3.31 16 27 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.18 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.17 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -71.17 292.38 -1.10 -72.28 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.16 Total: -1.74 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.54 Total: 16.53 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -9.10 Total: -125.04 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.04 Total: -7.54 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -0.69 Total: -2.14 kcal Total: -71.17 -1.10 -72.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223176831.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.289 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds