Wall clock time and date at job start Tue Mar 31 2020 10:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 109.46927 * 2 1 4 4 C 1.46901 * 109.46989 * 240.00082 * 2 1 3 5 5 C 1.46903 * 109.47239 * 120.00319 * 2 1 3 6 6 C 1.52996 * 109.47015 * 63.90830 * 5 2 1 7 7 H 1.09000 * 109.47038 * 54.05988 * 6 5 2 8 8 C 1.50703 * 109.46795 * 174.05556 * 6 5 2 9 9 H 1.07999 * 120.00081 * 245.22506 * 8 6 5 10 10 C 1.37874 * 119.99584 * 65.22976 * 8 6 5 11 11 N 1.31518 * 120.00468 * 6.67823 * 10 8 6 12 12 Si 1.86805 * 119.99950 * 186.68134 * 10 8 6 13 13 H 1.48505 * 109.47065 * 84.98107 * 12 10 8 14 14 H 1.48500 * 109.47347 * 204.98389 * 12 10 8 15 15 H 1.48504 * 109.46875 * 324.98673 * 12 10 8 16 16 O 1.42897 * 109.47433 * 294.05987 * 6 5 2 17 17 C 1.42893 * 114.00031 * 150.00155 * 16 6 5 18 18 C 1.53003 * 109.47038 * 179.97438 * 17 16 6 19 19 C 1.52999 * 109.47335 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47370 * 180.02562 * 19 18 17 21 21 C 1.42900 * 114.00118 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.48617 * 55.01733 * 21 20 19 23 23 C 1.53087 * 109.48060 * 175.05628 * 21 20 19 24 24 C 1.53187 * 109.16391 * 177.58845 * 23 21 20 25 25 C 1.53175 * 109.03122 * 303.01730 * 24 23 21 26 26 C 1.53090 * 109.16592 * 56.98125 * 25 24 23 27 27 O 1.42903 * 109.41447 * 302.38949 * 26 25 24 28 28 H 1.08993 * 109.47006 * 291.66978 * 1 2 3 29 29 H 1.08998 * 109.47149 * 51.67690 * 1 2 3 30 30 H 1.08999 * 109.46776 * 171.67616 * 1 2 3 31 31 H 1.09004 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47452 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.47370 * 60.00372 * 3 2 1 34 34 H 1.08992 * 109.47396 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.46962 * 60.00104 * 4 2 1 36 36 H 1.09000 * 109.46947 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.46748 * 303.90714 * 5 2 1 38 38 H 1.09002 * 109.46922 * 183.91256 * 5 2 1 39 39 H 0.97000 * 120.00144 * 179.97438 * 11 10 8 40 40 H 1.09003 * 109.47155 * 60.00333 * 17 16 6 41 41 H 1.08996 * 109.47550 * 299.99629 * 17 16 6 42 42 H 1.09002 * 109.47093 * 59.99967 * 18 17 16 43 43 H 1.09001 * 109.47494 * 300.00007 * 18 17 16 44 44 H 1.09002 * 109.46954 * 60.00008 * 19 18 17 45 45 H 1.09005 * 109.47375 * 300.00262 * 19 18 17 46 46 H 1.09003 * 109.52472 * 297.48704 * 23 21 20 47 47 H 1.08998 * 109.52717 * 57.68281 * 23 21 20 48 48 H 1.09002 * 109.54055 * 183.15198 * 24 23 21 49 49 H 1.09001 * 109.61563 * 62.92427 * 24 23 21 50 50 H 1.09003 * 109.52846 * 297.06995 * 25 24 23 51 51 H 1.09000 * 109.57227 * 176.91815 * 25 24 23 52 52 H 1.09004 * 109.48229 * 182.40460 * 26 25 24 53 53 H 1.08998 * 109.48913 * 62.37887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5306 -2.1606 1.1511 7 1 1.8605 -2.6046 0.2119 8 6 2.1541 -2.9038 2.3044 9 1 2.8793 -3.6818 2.1166 10 6 1.7987 -2.5906 3.5991 11 7 0.8230 -1.7383 3.8254 12 14 2.7031 -3.3768 5.0322 13 1 3.9307 -2.5963 5.3309 14 1 1.8214 -3.3893 6.2271 15 1 3.0763 -4.7697 4.6776 16 8 0.1071 -2.2450 1.2438 17 6 -0.4535 -3.3720 0.5675 18 6 -1.9745 -3.3613 0.7330 19 6 -2.5750 -4.5676 0.0084 20 8 -3.9956 -4.5573 0.1625 21 6 -4.6579 -5.6485 -0.4800 22 1 -4.2340 -6.5890 -0.1283 23 6 -6.1517 -5.6057 -0.1481 24 6 -6.8640 -6.7421 -0.8883 25 6 -6.5980 -6.6037 -2.3905 26 6 -5.0869 -6.6078 -2.6358 27 8 -4.4824 -5.5461 -1.8945 28 1 -0.3633 0.3795 0.9550 29 1 -0.3633 0.6372 -0.8062 30 1 -0.3633 -1.0169 -0.1488 31 1 3.0487 1.3850 -0.0005 32 1 1.5953 1.8989 -0.8900 33 1 1.5954 1.8988 0.8900 34 1 1.5953 -1.7201 -1.1995 35 1 1.5953 -0.1786 -2.0894 36 1 3.0487 -0.6921 -1.1997 37 1 1.5393 -0.2208 2.0880 38 1 3.0465 -0.6322 1.2351 39 1 0.5727 -1.5182 4.7364 40 1 -0.0485 -4.2899 0.9936 41 1 -0.2027 -3.3217 -0.4921 42 1 -2.3799 -2.4434 0.3073 43 1 -2.2251 -3.4119 1.7926 44 1 -2.1696 -5.4857 0.4337 45 1 -2.3244 -4.5166 -1.0513 46 1 -6.2899 -5.7281 0.9262 47 1 -6.5677 -4.6488 -0.4632 48 1 -7.9362 -6.6836 -0.7009 49 1 -6.4843 -7.7018 -0.5377 50 1 -7.0230 -5.6669 -2.7509 51 1 -7.0554 -7.4389 -2.9208 52 1 -4.8908 -6.4667 -3.6987 53 1 -4.6686 -7.5610 -2.3124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224530059.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:18 Heat of formation + Delta-G solvation = -48.610396 kcal Electronic energy + Delta-G solvation = -28448.573512 eV Core-core repulsion = 24631.725801 eV Total energy + Delta-G solvation = -3816.847711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.232 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.21306 -40.60175 -38.61380 -37.83777 -34.71704 -34.66776 -33.21065 -31.48657 -30.84034 -30.33825 -30.11889 -27.59575 -26.43217 -25.26625 -24.77272 -24.14097 -22.60907 -22.21016 -21.21354 -18.95440 -18.63149 -18.39198 -18.09404 -17.85898 -17.70895 -16.92700 -16.71504 -16.28206 -15.88163 -15.69521 -15.30488 -15.21330 -15.03182 -14.73679 -14.57219 -14.43910 -14.11353 -14.05879 -13.89373 -13.76102 -13.69783 -13.66059 -13.53906 -13.29978 -12.65257 -12.56810 -12.49665 -12.21041 -12.13668 -12.06444 -11.92814 -11.81078 -11.78721 -11.47406 -11.17183 -10.95405 -10.66424 -10.45112 -10.06302 -9.64784 -7.57134 -5.80018 0.38937 2.16168 2.26151 2.31258 2.34410 2.39159 2.40763 2.44082 2.90128 3.10892 3.17825 3.24151 3.34431 3.47405 3.60103 3.72003 3.75480 3.78242 3.79407 3.80096 3.81619 3.91978 3.93805 4.01336 4.08108 4.16968 4.22224 4.35344 4.36715 4.38841 4.42380 4.52194 4.54042 4.59972 4.68969 4.70895 4.78261 4.89107 4.91369 4.96247 5.01637 5.06431 5.26969 5.30507 5.42903 5.49736 6.12268 6.32452 6.32812 6.39740 6.81581 7.36699 8.02521 9.43729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.271 5.271 3 C -0.042 4.042 4 C -0.044 4.044 5 C 0.000 4.000 6 C 0.201 3.799 7 H 0.030 0.970 8 C -0.573 4.573 9 H 0.071 0.929 10 C 0.092 3.908 11 N -0.846 5.846 12 Si 0.894 3.106 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.269 1.269 16 O -0.364 6.364 17 C 0.072 3.928 18 C -0.114 4.114 19 C 0.066 3.934 20 O -0.364 6.364 21 C 0.257 3.743 22 H 0.053 0.947 23 C -0.141 4.141 24 C -0.121 4.121 25 C -0.161 4.161 26 C 0.072 3.928 27 O -0.408 6.408 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.273 0.727 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.097 0.903 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 7.270 -13.778 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.071 4.929 3 C -0.184 4.184 4 C -0.186 4.186 5 C -0.118 4.118 6 C 0.144 3.856 7 H 0.048 0.952 8 C -0.610 4.610 9 H 0.089 0.911 10 C -0.119 4.119 11 N -0.479 5.479 12 Si 0.720 3.280 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.193 1.193 16 O -0.284 6.284 17 C -0.005 4.005 18 C -0.151 4.151 19 C -0.011 4.011 20 O -0.284 6.284 21 C 0.161 3.839 22 H 0.071 0.929 23 C -0.179 4.179 24 C -0.159 4.159 25 C -0.198 4.198 26 C -0.005 4.005 27 O -0.329 6.329 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.115 0.885 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.136 7.814 -13.490 15.590 hybrid contribution 0.574 -0.972 0.819 1.394 sum 0.438 6.842 -12.671 14.407 Atomic orbital electron populations 1.24364 0.76162 1.10194 1.07463 1.46390 1.15811 1.14169 1.16552 1.24001 1.04797 0.81533 1.08025 1.24028 1.04830 1.02567 0.87189 1.24886 1.02755 0.98195 0.85998 1.19903 0.80789 0.87932 0.96942 0.95187 1.21200 1.27556 1.22090 0.90191 0.91096 1.25010 0.93399 0.94115 0.99401 1.69881 1.24100 1.31604 1.22292 0.86531 0.79811 0.80437 0.81203 1.19895 1.20447 1.19340 1.88031 1.21596 1.43429 1.75342 1.22023 0.92473 0.92145 0.93845 1.21358 0.93844 0.97309 1.02614 1.22371 0.80207 0.98625 0.99877 1.88015 1.19870 1.49125 1.71357 1.22938 0.92461 0.89215 0.79272 0.92920 1.22022 0.93362 1.00611 1.01884 1.21599 1.01292 0.98252 0.94753 1.22250 0.97172 1.03452 0.96972 1.22518 0.91964 0.89578 0.96411 1.87783 1.76723 1.49245 1.19182 0.86274 0.88753 0.84473 0.86984 0.87346 0.86644 0.86285 0.87355 0.86825 0.83942 0.86530 0.91700 0.92731 0.95472 0.91201 0.89912 0.93116 0.92471 0.89909 0.90051 0.90519 0.91476 0.90688 0.90354 0.88455 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.32 7.15 60.07 0.43 0.75 16 2 N -0.27 2.46 0.05 -395.63 -0.02 2.45 16 3 C -0.04 0.49 8.00 60.06 0.48 0.97 16 4 C -0.04 0.47 7.56 60.07 0.45 0.92 16 5 C 0.00 0.00 3.61 -3.82 -0.01 -0.01 16 6 C 0.20 0.29 1.85 -27.88 -0.05 0.24 16 7 H 0.03 -0.02 5.54 -51.93 -0.29 -0.31 16 8 C -0.57 -4.34 8.86 -34.44 -0.31 -4.65 16 9 H 0.07 0.63 7.82 -52.49 -0.41 0.22 16 10 C 0.09 0.88 5.23 -17.82 -0.09 0.78 16 11 N -0.85 -8.29 11.24 55.43 0.62 -7.67 16 12 Si 0.89 8.58 29.54 -169.99 -5.02 3.56 16 13 H -0.27 -2.66 7.11 56.52 0.40 -2.26 16 14 H -0.28 -3.05 7.11 56.52 0.40 -2.65 16 15 H -0.27 -2.82 7.11 56.52 0.40 -2.42 16 16 O -0.36 -0.86 5.92 -35.23 -0.21 -1.07 16 17 C 0.07 0.11 5.04 37.16 0.19 0.30 16 18 C -0.11 -0.23 5.95 -26.73 -0.16 -0.39 16 19 C 0.07 0.14 5.80 37.16 0.22 0.36 16 20 O -0.36 -1.45 10.27 -59.04 -0.61 -2.06 16 21 C 0.26 0.61 3.20 37.20 0.12 0.73 16 22 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 23 C -0.14 -0.14 5.79 -26.59 -0.15 -0.30 16 24 C -0.12 0.08 6.03 -26.54 -0.16 -0.08 16 25 C -0.16 0.15 6.14 -26.59 -0.16 -0.01 16 26 C 0.07 -0.02 6.84 37.20 0.25 0.24 16 27 O -0.41 -1.09 10.03 -59.04 -0.59 -1.69 16 28 H 0.12 -0.72 7.97 -51.93 -0.41 -1.13 16 29 H 0.09 -1.02 8.02 -51.93 -0.42 -1.43 16 30 H 0.14 -0.77 4.92 -51.93 -0.26 -1.03 16 31 H 0.11 -1.39 8.12 -51.93 -0.42 -1.81 16 32 H 0.11 -1.47 8.08 -51.93 -0.42 -1.89 16 33 H 0.11 -1.28 8.14 -51.93 -0.42 -1.70 16 34 H 0.12 -1.06 5.89 -51.93 -0.31 -1.37 16 35 H 0.11 -1.39 8.14 -51.93 -0.42 -1.82 16 36 H 0.11 -1.31 8.14 -51.93 -0.42 -1.73 16 37 H 0.14 -0.04 6.78 -51.93 -0.35 -0.39 16 38 H 0.12 -0.50 8.10 -51.93 -0.42 -0.92 16 39 H 0.27 2.88 8.31 -40.82 -0.34 2.54 16 40 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.03 -0.04 8.08 -51.93 -0.42 -0.46 16 42 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.06 0.09 7.74 -51.93 -0.40 -0.31 16 46 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 47 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 48 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 49 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 50 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 51 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 52 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 53 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 LS Contribution 401.08 15.07 6.04 6.04 Total: 0.00 -17.28 401.08 -9.17 -26.44 By element: Atomic # 1 Polarization: -15.45 SS G_CDS: -10.43 Total: -25.87 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 1.04 Total: -0.14 kcal Atomic # 7 Polarization: -5.83 SS G_CDS: 0.60 Total: -5.23 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -1.41 Total: -4.81 kcal Atomic # 14 Polarization: 8.58 SS G_CDS: -5.02 Total: 3.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -17.28 -9.17 -26.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530059.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.166 kcal (2) G-P(sol) polarization free energy of solvation -17.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds