Wall clock time and date at job start Tue Mar 31 2020 10:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 109.46927 * 2 1 4 4 C 1.46901 * 109.46989 * 240.00082 * 2 1 3 5 5 C 1.46903 * 109.47239 * 120.00319 * 2 1 3 6 6 C 1.52996 * 109.47015 * 63.90830 * 5 2 1 7 7 H 1.09000 * 109.47038 * 54.05988 * 6 5 2 8 8 C 1.50703 * 109.46795 * 174.05556 * 6 5 2 9 9 H 1.07999 * 120.00081 * 245.22506 * 8 6 5 10 10 C 1.37874 * 119.99584 * 65.22976 * 8 6 5 11 11 N 1.31518 * 120.00468 * 6.67823 * 10 8 6 12 12 Si 1.86805 * 119.99950 * 186.68134 * 10 8 6 13 13 H 1.48505 * 109.47065 * 84.98107 * 12 10 8 14 14 H 1.48500 * 109.47347 * 204.98389 * 12 10 8 15 15 H 1.48504 * 109.46875 * 324.98673 * 12 10 8 16 16 O 1.42897 * 109.47433 * 294.05987 * 6 5 2 17 17 C 1.42893 * 114.00031 * 150.00155 * 16 6 5 18 18 C 1.53003 * 109.47038 * 179.97438 * 17 16 6 19 19 C 1.52999 * 109.47335 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47370 * 180.02562 * 19 18 17 21 21 C 1.42900 * 114.00118 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.48617 * 55.01733 * 21 20 19 23 23 C 1.53087 * 109.48060 * 175.05628 * 21 20 19 24 24 C 1.53187 * 109.16391 * 177.58845 * 23 21 20 25 25 C 1.53175 * 109.03122 * 303.01730 * 24 23 21 26 26 C 1.53090 * 109.16592 * 56.98125 * 25 24 23 27 27 O 1.42903 * 109.41447 * 302.38949 * 26 25 24 28 28 H 1.08993 * 109.47006 * 291.66978 * 1 2 3 29 29 H 1.08998 * 109.47149 * 51.67690 * 1 2 3 30 30 H 1.08999 * 109.46776 * 171.67616 * 1 2 3 31 31 H 1.09004 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47452 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.47370 * 60.00372 * 3 2 1 34 34 H 1.08992 * 109.47396 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.46962 * 60.00104 * 4 2 1 36 36 H 1.09000 * 109.46947 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.46748 * 303.90714 * 5 2 1 38 38 H 1.09002 * 109.46922 * 183.91256 * 5 2 1 39 39 H 0.97000 * 120.00144 * 179.97438 * 11 10 8 40 40 H 1.09003 * 109.47155 * 60.00333 * 17 16 6 41 41 H 1.08996 * 109.47550 * 299.99629 * 17 16 6 42 42 H 1.09002 * 109.47093 * 59.99967 * 18 17 16 43 43 H 1.09001 * 109.47494 * 300.00007 * 18 17 16 44 44 H 1.09002 * 109.46954 * 60.00008 * 19 18 17 45 45 H 1.09005 * 109.47375 * 300.00262 * 19 18 17 46 46 H 1.09003 * 109.52472 * 297.48704 * 23 21 20 47 47 H 1.08998 * 109.52717 * 57.68281 * 23 21 20 48 48 H 1.09002 * 109.54055 * 183.15198 * 24 23 21 49 49 H 1.09001 * 109.61563 * 62.92427 * 24 23 21 50 50 H 1.09003 * 109.52846 * 297.06995 * 25 24 23 51 51 H 1.09000 * 109.57227 * 176.91815 * 25 24 23 52 52 H 1.09004 * 109.48229 * 182.40460 * 26 25 24 53 53 H 1.08998 * 109.48913 * 62.37887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5306 -2.1606 1.1511 7 1 1.8605 -2.6046 0.2119 8 6 2.1541 -2.9038 2.3044 9 1 2.8793 -3.6818 2.1166 10 6 1.7987 -2.5906 3.5991 11 7 0.8230 -1.7383 3.8254 12 14 2.7031 -3.3768 5.0322 13 1 3.9307 -2.5963 5.3309 14 1 1.8214 -3.3893 6.2271 15 1 3.0763 -4.7697 4.6776 16 8 0.1071 -2.2450 1.2438 17 6 -0.4535 -3.3720 0.5675 18 6 -1.9745 -3.3613 0.7330 19 6 -2.5750 -4.5676 0.0084 20 8 -3.9956 -4.5573 0.1625 21 6 -4.6579 -5.6485 -0.4800 22 1 -4.2340 -6.5890 -0.1283 23 6 -6.1517 -5.6057 -0.1481 24 6 -6.8640 -6.7421 -0.8883 25 6 -6.5980 -6.6037 -2.3905 26 6 -5.0869 -6.6078 -2.6358 27 8 -4.4824 -5.5461 -1.8945 28 1 -0.3633 0.3795 0.9550 29 1 -0.3633 0.6372 -0.8062 30 1 -0.3633 -1.0169 -0.1488 31 1 3.0487 1.3850 -0.0005 32 1 1.5953 1.8989 -0.8900 33 1 1.5954 1.8988 0.8900 34 1 1.5953 -1.7201 -1.1995 35 1 1.5953 -0.1786 -2.0894 36 1 3.0487 -0.6921 -1.1997 37 1 1.5393 -0.2208 2.0880 38 1 3.0465 -0.6322 1.2351 39 1 0.5727 -1.5182 4.7364 40 1 -0.0485 -4.2899 0.9936 41 1 -0.2027 -3.3217 -0.4921 42 1 -2.3799 -2.4434 0.3073 43 1 -2.2251 -3.4119 1.7926 44 1 -2.1696 -5.4857 0.4337 45 1 -2.3244 -4.5166 -1.0513 46 1 -6.2899 -5.7281 0.9262 47 1 -6.5677 -4.6488 -0.4632 48 1 -7.9362 -6.6836 -0.7009 49 1 -6.4843 -7.7018 -0.5377 50 1 -7.0230 -5.6669 -2.7509 51 1 -7.0554 -7.4389 -2.9208 52 1 -4.8908 -6.4667 -3.6987 53 1 -4.6686 -7.5610 -2.3124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224530059.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:17 Heat of formation + Delta-G solvation = -52.068424 kcal Electronic energy + Delta-G solvation = -28448.723463 eV Core-core repulsion = 24631.725801 eV Total energy + Delta-G solvation = -3816.997662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.232 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61321 -40.70065 -38.73085 -37.98943 -35.12738 -34.70734 -33.51139 -31.50558 -30.84251 -29.51339 -29.37351 -27.72568 -26.55310 -25.31050 -24.51004 -24.21176 -22.64537 -22.25501 -21.23298 -18.97472 -18.54984 -18.11345 -17.85774 -17.76515 -17.38373 -17.00597 -16.78424 -16.50167 -16.32598 -15.76170 -15.33762 -15.26028 -14.91051 -14.56902 -14.42057 -14.05990 -13.82723 -13.73925 -13.69927 -13.32636 -13.26888 -13.21038 -13.14660 -13.06856 -12.91343 -12.86867 -12.67564 -12.60180 -12.48454 -12.24945 -12.08939 -12.07201 -11.88225 -11.70253 -11.47814 -11.13219 -10.84530 -10.76919 -10.51883 -9.90256 -8.27255 -6.44761 1.06925 1.32876 1.44578 1.49785 2.16028 2.32596 2.78394 2.91497 3.06330 3.12468 3.17639 3.45580 3.75182 3.81689 3.93980 3.96514 3.99462 4.02201 4.07608 4.18279 4.22552 4.30032 4.33363 4.37159 4.40304 4.43474 4.45972 4.51625 4.52258 4.57721 4.64546 4.68725 4.70419 4.74771 4.80594 4.80795 4.82909 4.85341 4.97514 5.04966 5.06625 5.08469 5.22293 5.26537 5.30286 5.34240 5.63240 5.95515 5.99752 6.21601 6.42432 6.91500 7.36834 8.70197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.258 5.258 3 C -0.043 4.043 4 C -0.051 4.051 5 C 0.020 3.980 6 C 0.194 3.806 7 H 0.058 0.942 8 C -0.575 4.575 9 H 0.052 0.948 10 C 0.071 3.929 11 N -0.857 5.857 12 Si 0.909 3.091 13 H -0.273 1.273 14 H -0.301 1.301 15 H -0.284 1.284 16 O -0.371 6.371 17 C 0.075 3.925 18 C -0.103 4.103 19 C 0.069 3.931 20 O -0.386 6.386 21 C 0.252 3.748 22 H 0.058 0.942 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.158 4.158 26 C 0.064 3.936 27 O -0.425 6.425 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.261 0.739 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.110 0.890 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 8.488 -17.142 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.085 4.915 3 C -0.184 4.184 4 C -0.191 4.191 5 C -0.101 4.101 6 C 0.138 3.862 7 H 0.075 0.925 8 C -0.613 4.613 9 H 0.070 0.930 10 C -0.137 4.137 11 N -0.492 5.492 12 Si 0.738 3.262 13 H -0.198 1.198 14 H -0.228 1.228 15 H -0.210 1.210 16 O -0.290 6.290 17 C -0.002 4.002 18 C -0.141 4.141 19 C -0.007 4.007 20 O -0.306 6.306 21 C 0.157 3.843 22 H 0.075 0.925 23 C -0.178 4.178 24 C -0.157 4.157 25 C -0.196 4.196 26 C -0.012 4.012 27 O -0.347 6.347 28 H 0.114 0.886 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.113 0.887 52 H 0.128 0.872 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.012 9.030 -16.870 19.134 hybrid contribution 0.549 -1.413 1.771 2.331 sum 0.561 7.618 -15.099 16.921 Atomic orbital electron populations 1.24278 0.76668 1.09475 1.07725 1.45970 1.15275 1.15375 1.14895 1.24195 1.05676 0.79328 1.09184 1.24246 1.05838 1.01873 0.87182 1.24034 1.03179 0.95476 0.87426 1.19966 0.79881 0.90707 0.95674 0.92456 1.21566 1.26323 1.21671 0.91789 0.93022 1.25152 0.93976 0.94720 0.99838 1.69937 1.25213 1.33011 1.21006 0.86376 0.79365 0.79459 0.80968 1.19843 1.22820 1.21001 1.88060 1.21786 1.43142 1.76054 1.22015 0.91838 0.90658 0.95720 1.21244 0.94380 0.97966 1.00485 1.22375 0.79635 0.98376 1.00362 1.87987 1.20652 1.49982 1.71967 1.23075 0.92997 0.88867 0.79409 0.92514 1.22039 0.92754 1.00911 1.02116 1.21620 1.01543 0.97729 0.94847 1.22239 0.96730 1.03811 0.96786 1.22748 0.92362 0.89270 0.96791 1.87750 1.77304 1.50487 1.19186 0.88631 0.84804 0.86635 0.85708 0.84193 0.87546 0.87996 0.83947 0.85449 0.86891 0.85135 0.92951 0.95831 0.91605 0.89989 0.93284 0.93511 0.91356 0.89992 0.91050 0.89716 0.90809 0.91340 0.88673 0.87195 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.69 7.15 127.69 0.91 1.60 16 2 N -0.26 5.18 0.05 ******* -0.07 5.11 16 3 C -0.04 1.13 8.00 127.69 1.02 2.15 16 4 C -0.05 1.23 7.56 127.69 0.96 2.20 16 5 C 0.02 -0.14 3.61 86.30 0.31 0.17 16 6 C 0.19 0.63 1.85 29.85 0.06 0.68 16 7 H 0.06 -0.14 5.54 -2.39 -0.01 -0.16 16 8 C -0.58 -9.70 8.86 25.60 0.23 -9.47 16 9 H 0.05 1.02 7.82 -2.91 -0.02 1.00 16 10 C 0.07 1.53 5.23 84.65 0.44 1.97 16 11 N -0.86 -19.13 11.24 21.45 0.24 -18.89 16 12 Si 0.91 20.03 29.54 68.60 2.03 22.05 16 13 H -0.27 -5.83 7.11 99.48 0.71 -5.13 16 14 H -0.30 -7.65 7.11 99.48 0.71 -6.94 16 15 H -0.28 -6.82 7.11 99.48 0.71 -6.12 16 16 O -0.37 -2.13 5.92 -148.98 -0.88 -3.01 16 17 C 0.07 0.30 5.04 71.98 0.36 0.66 16 18 C -0.10 -0.56 5.95 30.59 0.18 -0.38 16 19 C 0.07 0.37 5.80 71.98 0.42 0.79 16 20 O -0.39 -3.57 10.27 -126.21 -1.30 -4.86 16 21 C 0.25 1.39 3.20 72.01 0.23 1.62 16 22 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 23 C -0.14 -0.38 5.79 30.69 0.18 -0.20 16 24 C -0.12 0.20 6.03 30.72 0.19 0.39 16 25 C -0.16 0.42 6.14 30.68 0.19 0.61 16 26 C 0.06 -0.07 6.84 72.01 0.49 0.42 16 27 O -0.43 -2.30 10.03 -126.21 -1.27 -3.57 16 28 H 0.09 -1.11 7.97 -2.39 -0.02 -1.13 16 29 H 0.13 -3.32 8.02 -2.39 -0.02 -3.34 16 30 H 0.12 -1.40 4.92 -2.39 -0.01 -1.41 16 31 H 0.12 -3.48 8.12 -2.39 -0.02 -3.50 16 32 H 0.14 -4.40 8.08 -2.39 -0.02 -4.42 16 33 H 0.11 -2.48 8.14 -2.39 -0.02 -2.50 16 34 H 0.10 -2.06 5.89 -2.39 -0.01 -2.08 16 35 H 0.14 -4.33 8.14 -2.39 -0.02 -4.35 16 36 H 0.13 -3.37 8.14 -2.39 -0.02 -3.39 16 37 H 0.11 0.06 6.78 -2.39 -0.02 0.04 16 38 H 0.13 -1.25 8.10 -2.39 -0.02 -1.27 16 39 H 0.26 6.34 8.31 -92.71 -0.77 5.57 16 40 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.07 -0.24 8.08 -2.39 -0.02 -0.26 16 42 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.07 0.21 7.74 -2.38 -0.02 0.19 16 46 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 51 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 52 H 0.11 -0.43 8.14 -2.38 -0.02 -0.45 16 53 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -44.81 401.08 5.76 -39.05 By element: Atomic # 1 Polarization: -39.91 SS G_CDS: 0.83 Total: -39.08 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 6.17 Total: 3.20 kcal Atomic # 7 Polarization: -13.95 SS G_CDS: 0.17 Total: -13.78 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -3.44 Total: -11.44 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: 2.03 Total: 22.05 kcal Total: -44.81 5.76 -39.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224530059.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.020 kcal (2) G-P(sol) polarization free energy of solvation -44.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds