Wall clock time and date at job start Tue Mar 31 2020 11:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47203 * 239.99725 * 3 2 1 5 5 H 1.48502 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47240 * 119.99672 * 3 2 1 7 7 C 1.37880 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99403 * 175.64267 * 7 2 1 9 9 C 1.50699 * 120.00536 * 355.65275 * 7 2 1 10 10 H 1.08997 * 109.46808 * 35.07576 * 9 7 2 11 11 C 1.52994 * 109.47489 * 155.08272 * 9 7 2 12 12 Cl 1.80296 * 109.47261 * 185.51112 * 11 9 7 13 13 O 1.42908 * 109.46649 * 275.08337 * 9 7 2 14 14 C 1.35331 * 116.99431 * 149.99746 * 13 9 7 15 15 N 1.28671 * 124.80290 * 179.97438 * 14 13 9 16 16 C 1.34839 * 117.92688 * 179.97438 * 15 14 13 17 17 C 1.41097 * 128.74638 * 179.97438 * 16 15 14 18 18 C 1.37175 * 120.45596 * 180.02562 * 17 16 15 19 19 C 1.38830 * 120.58776 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.02289 * 179.97438 * 19 18 17 21 21 C 1.37782 * 119.95465 * 359.97438 * 19 18 17 22 22 C 1.39294 * 120.18757 * 359.97438 * 21 19 18 23 23 S 1.75798 * 124.81177 * 359.69514 * 14 13 9 24 24 H 0.97006 * 119.99248 * 185.52930 * 1 2 3 25 25 H 1.08998 * 109.47104 * 305.51286 * 11 9 7 26 26 H 1.09003 * 109.47234 * 65.50673 * 11 9 7 27 27 H 1.07998 * 119.77130 * 0.02562 * 17 16 15 28 28 H 1.07996 * 119.70623 * 180.02562 * 18 17 16 29 29 H 1.08006 * 119.90543 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0822 -1.1954 -0.0705 9 6 1.2544 -2.4973 0.1000 10 1 0.3075 -2.4130 -0.4331 11 6 2.0919 -3.6167 -0.5215 12 17 1.1308 -5.1419 -0.5491 13 8 1.0022 -2.7979 1.4742 14 6 -0.1154 -3.5086 1.7524 15 7 -0.4864 -3.8615 2.9329 16 6 -1.6281 -4.5691 3.0508 17 6 -2.2408 -5.0684 4.2196 18 6 -3.4142 -5.7748 4.1422 19 6 -4.0172 -6.0103 2.9141 20 17 -5.5018 -6.9066 2.8330 21 6 -3.4367 -5.5321 1.7596 22 6 -2.2458 -4.8121 1.8207 23 16 -1.2694 -4.0746 0.5530 24 1 -0.4849 -0.8363 0.0810 25 1 2.3669 -3.3420 -1.5398 26 1 2.9946 -3.7667 0.0707 27 1 -1.7829 -4.8933 5.1819 28 1 -3.8729 -6.1510 5.0446 29 1 -3.9063 -5.7161 0.8046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228928802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:55 Heat of formation + Delta-G solvation = -4.472420 kcal Electronic energy + Delta-G solvation = -19083.213062 eV Core-core repulsion = 15763.796211 eV Total energy + Delta-G solvation = -3319.416851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95587 -38.58500 -36.93444 -35.72964 -35.32877 -33.60820 -31.03008 -30.40280 -28.80071 -25.20541 -24.17253 -23.03264 -21.90644 -21.14374 -18.66259 -17.73937 -17.23243 -16.33142 -15.59783 -15.40985 -14.86024 -14.44632 -14.13747 -13.94221 -13.78885 -13.44322 -12.84247 -12.72900 -12.53204 -12.27731 -12.14736 -11.77977 -11.21777 -11.20099 -10.98448 -10.83006 -10.51499 -10.37543 -10.05166 -9.85272 -9.59094 -9.34944 -9.13664 -8.91752 -7.79858 -7.65860 -7.06805 -4.95378 0.72605 1.18120 1.38217 1.92502 2.18137 2.61191 2.64903 3.05528 3.20209 3.33332 3.38065 3.80093 4.08645 4.65453 4.77185 4.97590 5.12915 5.30482 5.36680 5.44920 5.54062 5.75270 5.79863 6.03373 6.16158 6.19980 6.31142 6.64374 7.08572 7.53455 7.72033 8.08461 8.25725 8.84997 10.28617 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004054 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.808942 B = 6904.320242 C = 7516.852763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.037 3.963 3 Si 1.079 2.921 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.169 3.831 10 H 0.058 0.942 11 C -0.040 4.040 12 Cl -0.201 7.201 13 O -0.266 6.266 14 C 0.350 3.650 15 N -0.524 5.524 16 C 0.136 3.864 17 C -0.074 4.074 18 C -0.096 4.096 19 C -0.048 4.048 20 Cl -0.073 7.073 21 C -0.046 4.046 22 C -0.200 4.200 23 S 0.048 5.952 24 H 0.275 0.725 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -9.144 1.954 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.175 4.175 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.622 4.622 8 H 0.094 0.906 9 C 0.116 3.884 10 H 0.076 0.924 11 C -0.104 4.104 12 Cl -0.175 7.175 13 O -0.172 6.172 14 C 0.030 3.970 15 N -0.256 5.256 16 C 0.014 3.986 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.078 4.078 20 Cl -0.045 7.045 21 C -0.070 4.070 22 C -0.319 4.319 23 S 0.298 5.702 24 H 0.087 0.913 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.259 -7.291 1.215 8.531 hybrid contribution -0.344 -2.205 0.674 2.331 sum -4.603 -9.495 1.889 10.720 Atomic orbital electron populations 1.70841 1.07150 1.31789 1.38999 1.26429 0.96196 1.03835 0.91058 0.83388 0.75072 0.73758 0.77425 1.20473 1.19971 1.20367 1.21898 0.95869 0.88961 1.55453 0.90624 1.21251 0.97003 0.93255 0.76924 0.92420 1.25342 0.97111 0.83121 1.04789 1.98714 1.75459 1.44014 1.99305 1.86794 1.32998 1.62271 1.35136 1.26085 0.91312 0.90589 0.89028 1.66094 1.16747 1.21330 1.21450 1.18965 0.89996 0.96336 0.93260 1.20490 0.94600 0.97751 0.96636 1.20649 0.95252 0.99444 0.96431 1.20462 0.90663 1.01949 0.94710 1.98347 1.33439 1.73926 1.98752 1.19989 0.92809 0.96361 0.97824 1.23595 1.01962 1.08758 0.97632 1.85636 1.18548 1.56263 1.09785 0.91329 0.87357 0.88592 0.84227 0.84330 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.11 13.62 55.43 0.76 -22.36 15 2 C 0.04 0.92 5.46 -17.82 -0.10 0.82 15 3 Si 1.08 21.87 29.91 -169.99 -5.08 16.79 15 4 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 7 C -0.59 -14.26 8.69 -34.44 -0.30 -14.56 15 8 H 0.08 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.17 3.80 1.95 -27.89 -0.05 3.75 15 10 H 0.06 1.36 5.11 -51.93 -0.27 1.10 15 11 C -0.04 -0.75 6.31 37.15 0.23 -0.51 15 12 Cl -0.20 -3.59 24.77 -51.86 -1.28 -4.88 15 13 O -0.27 -6.39 9.81 -17.68 -0.17 -6.56 15 14 C 0.35 7.81 7.59 51.44 0.39 8.20 15 15 N -0.52 -11.48 10.60 -11.85 -0.13 -11.60 15 16 C 0.14 2.57 6.94 -84.89 -0.59 1.98 15 17 C -0.07 -1.11 10.09 -38.88 -0.39 -1.50 15 18 C -0.10 -1.23 9.78 -39.75 -0.39 -1.61 15 19 C -0.05 -0.65 6.32 -39.53 -0.25 -0.90 15 20 Cl -0.07 -0.85 28.96 -51.86 -1.50 -2.35 15 21 C -0.05 -0.70 9.84 -39.36 -0.39 -1.09 15 22 C -0.20 -3.61 6.52 -38.61 -0.25 -3.87 15 23 S 0.05 0.92 18.13 -107.50 -1.95 -1.03 15 24 H 0.28 7.45 6.67 -40.82 -0.27 7.18 15 25 H 0.11 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 27 H 0.14 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.13 1.78 8.06 -52.48 -0.42 1.36 15 LS Contribution 296.66 15.07 4.47 4.47 Total: -1.00 -27.19 296.66 -8.83 -36.02 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.86 Total: 0.79 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.08 Total: -9.29 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.63 Total: -33.96 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.17 Total: -6.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.08 Total: 16.79 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -1.95 Total: -1.03 kcal Atomic # 17 Polarization: -4.44 SS G_CDS: -2.79 Total: -7.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.19 -8.83 -36.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228928802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.551 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds