Wall clock time and date at job start Tue Mar 31 2020 11:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47203 * 239.99725 * 3 2 1 5 5 H 1.48502 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47240 * 119.99672 * 3 2 1 7 7 C 1.37880 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99403 * 175.64267 * 7 2 1 9 9 C 1.50699 * 120.00536 * 355.65275 * 7 2 1 10 10 H 1.08997 * 109.46808 * 35.07576 * 9 7 2 11 11 C 1.52994 * 109.47489 * 155.08272 * 9 7 2 12 12 Cl 1.80296 * 109.47261 * 185.51112 * 11 9 7 13 13 O 1.42908 * 109.46649 * 275.08337 * 9 7 2 14 14 C 1.35331 * 116.99431 * 149.99746 * 13 9 7 15 15 N 1.28671 * 124.80290 * 179.97438 * 14 13 9 16 16 C 1.34839 * 117.92688 * 179.97438 * 15 14 13 17 17 C 1.41097 * 128.74638 * 179.97438 * 16 15 14 18 18 C 1.37175 * 120.45596 * 180.02562 * 17 16 15 19 19 C 1.38830 * 120.58776 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.02289 * 179.97438 * 19 18 17 21 21 C 1.37782 * 119.95465 * 359.97438 * 19 18 17 22 22 C 1.39294 * 120.18757 * 359.97438 * 21 19 18 23 23 S 1.75798 * 124.81177 * 359.69514 * 14 13 9 24 24 H 0.97006 * 119.99248 * 185.52930 * 1 2 3 25 25 H 1.08998 * 109.47104 * 305.51286 * 11 9 7 26 26 H 1.09003 * 109.47234 * 65.50673 * 11 9 7 27 27 H 1.07998 * 119.77130 * 0.02562 * 17 16 15 28 28 H 1.07996 * 119.70623 * 180.02562 * 18 17 16 29 29 H 1.08006 * 119.90543 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0822 -1.1954 -0.0705 9 6 1.2544 -2.4973 0.1000 10 1 0.3075 -2.4130 -0.4331 11 6 2.0919 -3.6167 -0.5215 12 17 1.1308 -5.1419 -0.5491 13 8 1.0022 -2.7979 1.4742 14 6 -0.1154 -3.5086 1.7524 15 7 -0.4864 -3.8615 2.9329 16 6 -1.6281 -4.5691 3.0508 17 6 -2.2408 -5.0684 4.2196 18 6 -3.4142 -5.7748 4.1422 19 6 -4.0172 -6.0103 2.9141 20 17 -5.5018 -6.9066 2.8330 21 6 -3.4367 -5.5321 1.7596 22 6 -2.2458 -4.8121 1.8207 23 16 -1.2694 -4.0746 0.5530 24 1 -0.4849 -0.8363 0.0810 25 1 2.3669 -3.3420 -1.5398 26 1 2.9946 -3.7667 0.0707 27 1 -1.7829 -4.8933 5.1819 28 1 -3.8729 -6.1510 5.0446 29 1 -3.9063 -5.7161 0.8046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228928802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:55 Heat of formation + Delta-G solvation = -20.625091 kcal Electronic energy + Delta-G solvation = -19083.913494 eV Core-core repulsion = 15763.796211 eV Total energy + Delta-G solvation = -3320.117283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = -0.63 seconds Orbital eigenvalues (eV) -41.34594 -40.20262 -38.15094 -37.08288 -36.71750 -35.40733 -32.24057 -32.04956 -30.15789 -26.97907 -25.62814 -24.41581 -23.47415 -22.55586 -20.24189 -19.31694 -18.73518 -17.75428 -17.22212 -16.69865 -16.26858 -16.02044 -15.74563 -15.34938 -15.11755 -14.84058 -14.26007 -14.18818 -13.87807 -13.76448 -13.47881 -13.23352 -12.83049 -12.57136 -12.42802 -12.08591 -11.95165 -11.80152 -11.51063 -11.35155 -11.13459 -10.85627 -10.79538 -10.61285 -9.16450 -9.11436 -8.99578 -6.89084 -0.65086 -0.11664 -0.02383 0.48619 1.03601 1.16009 1.19306 1.45341 1.56793 1.77692 1.80211 2.43520 2.49479 2.98188 3.45413 3.60894 3.80339 3.88748 3.95103 4.09570 4.18486 4.34057 4.59791 4.63594 4.84478 5.00297 5.04041 5.30385 5.45217 5.78946 5.90943 6.14429 6.69604 7.00211 8.35276 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004054 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.808942 B = 6904.320242 C = 7516.852763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.008 4.008 3 Si 1.122 2.878 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.602 4.602 8 H 0.084 0.916 9 C 0.168 3.832 10 H 0.042 0.958 11 C -0.034 4.034 12 Cl -0.193 7.193 13 O -0.292 6.292 14 C 0.319 3.681 15 N -0.542 5.542 16 C 0.097 3.903 17 C -0.072 4.072 18 C -0.079 4.079 19 C -0.036 4.036 20 Cl -0.046 7.046 21 C -0.056 4.056 22 C -0.208 4.208 23 S 0.052 5.948 24 H 0.262 0.738 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.159 0.841 28 H 0.180 0.820 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -10.595 2.767 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.213 4.213 3 Si 0.940 3.060 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.637 4.637 8 H 0.102 0.898 9 C 0.114 3.886 10 H 0.060 0.940 11 C -0.097 4.097 12 Cl -0.167 7.167 13 O -0.200 6.200 14 C -0.001 4.001 15 N -0.274 5.274 16 C -0.023 4.023 17 C -0.092 4.092 18 C -0.100 4.100 19 C -0.066 4.066 20 Cl -0.017 7.017 21 C -0.079 4.079 22 C -0.327 4.327 23 S 0.301 5.699 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.177 0.823 28 H 0.197 0.803 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.251 -8.784 2.033 10.434 hybrid contribution -0.279 -2.011 0.560 2.106 sum -5.530 -10.794 2.593 12.403 Atomic orbital electron populations 1.70947 1.08261 1.31018 1.42397 1.27778 0.96186 1.07280 0.90043 0.82890 0.74283 0.70012 0.78788 1.17681 1.20836 1.19447 1.22237 0.96441 0.89888 1.55146 0.89812 1.21209 0.96743 0.94290 0.76314 0.94005 1.25196 0.96467 0.82467 1.05576 1.98709 1.75487 1.43190 1.99311 1.86590 1.34338 1.63716 1.35312 1.26017 0.91677 0.92254 0.90194 1.66008 1.18135 1.21351 1.21936 1.19374 0.89999 0.97929 0.94991 1.20842 0.95038 0.97152 0.96216 1.21092 0.93868 0.97401 0.97656 1.20670 0.91049 1.00408 0.94438 1.98370 1.31591 1.73032 1.98710 1.20221 0.92027 0.96217 0.99434 1.23725 1.02895 1.09464 0.96660 1.85410 1.18326 1.56288 1.09826 0.92771 0.85528 0.87717 0.82298 0.80262 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.07 13.62 21.45 0.29 -49.78 15 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 15 3 Si 1.12 44.29 29.91 68.60 2.05 46.34 15 4 H -0.25 -8.82 7.11 99.48 0.71 -8.12 15 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 7 C -0.60 -29.84 8.69 25.60 0.22 -29.61 15 8 H 0.08 3.89 7.81 -2.91 -0.02 3.87 15 9 C 0.17 7.79 1.95 29.85 0.06 7.85 15 10 H 0.04 2.08 5.11 -2.39 -0.01 2.07 15 11 C -0.03 -1.27 6.31 71.98 0.45 -0.81 15 12 Cl -0.19 -6.91 24.77 -2.72 -0.07 -6.98 15 13 O -0.29 -14.62 9.81 -86.19 -0.85 -15.47 15 14 C 0.32 14.75 7.59 130.71 0.99 15.75 15 15 N -0.54 -24.31 10.60 -306.22 -3.25 -27.56 15 16 C 0.10 3.63 6.94 39.76 0.28 3.90 15 17 C -0.07 -2.00 10.09 22.72 0.23 -1.77 15 18 C -0.08 -1.72 9.78 22.16 0.22 -1.50 15 19 C -0.04 -0.85 6.32 22.30 0.14 -0.71 15 20 Cl -0.05 -0.89 28.96 -2.72 -0.08 -0.97 15 21 C -0.06 -1.57 9.84 22.42 0.22 -1.35 15 22 C -0.21 -7.45 6.52 22.90 0.15 -7.30 15 23 S 0.05 2.06 18.13 -56.49 -1.02 1.03 15 24 H 0.26 14.96 6.67 -92.70 -0.62 14.34 15 25 H 0.13 4.19 8.14 -2.39 -0.02 4.17 15 26 H 0.10 3.69 8.14 -2.39 -0.02 3.67 15 27 H 0.16 3.73 8.06 -2.91 -0.02 3.71 15 28 H 0.18 2.49 8.06 -2.91 -0.02 2.47 15 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 Total: -1.00 -61.09 296.66 1.86 -59.22 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.36 Total: 9.66 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.42 Total: -15.50 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.95 Total: -77.33 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.85 Total: -15.47 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.05 Total: 46.34 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.02 Total: 1.03 kcal Atomic # 17 Polarization: -7.81 SS G_CDS: -0.15 Total: -7.95 kcal Total: -61.09 1.86 -59.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228928802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.599 kcal (2) G-P(sol) polarization free energy of solvation -61.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.63 seconds