Wall clock time and date at job start Tue Mar 31 2020 11:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99620 * 2 1 4 4 H 1.48493 * 109.47391 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46969 * 120.00368 * 3 2 1 6 6 H 1.48501 * 109.46815 * 239.99614 * 3 2 1 7 7 C 1.37878 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99788 * 186.10234 * 7 2 1 9 9 C 1.50697 * 119.99934 * 6.11180 * 7 2 1 10 10 H 1.08999 * 109.47540 * 35.30953 * 9 7 2 11 11 C 1.53004 * 109.47114 * 155.30697 * 9 7 2 12 12 Cl 1.80301 * 109.47265 * 185.50642 * 11 9 7 13 13 O 1.42898 * 109.47375 * 275.30709 * 9 7 2 14 14 C 1.35327 * 117.00425 * 150.00041 * 13 9 7 15 15 N 1.28661 * 124.80908 * 180.02562 * 14 13 9 16 16 C 1.34837 * 117.92776 * 180.02562 * 15 14 13 17 17 C 1.39782 * 112.86112 * 0.02562 * 16 15 14 18 18 C 1.39276 * 120.41775 * 179.97438 * 17 16 15 19 19 C 1.37717 * 120.21887 * 359.97438 * 18 17 16 20 20 C 1.38691 * 119.98976 * 0.02562 * 19 18 17 21 21 C 1.37319 * 120.58441 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.79064 * 180.02562 * 21 20 19 23 23 S 1.75804 * 124.80427 * 359.70266 * 14 13 9 24 24 H 0.97005 * 119.99577 * 175.13284 * 1 2 3 25 25 H 1.08998 * 109.47313 * 305.50957 * 11 9 7 26 26 H 1.09007 * 109.46860 * 65.50759 * 11 9 7 27 27 H 1.08006 * 119.89314 * 179.97438 * 18 17 16 28 28 H 1.08008 * 120.00803 * 180.02562 * 19 18 17 29 29 H 1.07997 * 119.70670 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1966 0.1000 9 6 1.2575 -2.4955 -0.1378 10 1 0.4080 -2.3575 -0.8066 11 6 2.1921 -3.5613 -0.7138 12 17 1.2589 -5.0711 -1.0307 13 8 0.7901 -2.9152 1.1456 14 6 -0.3525 -3.6398 1.1767 15 7 -0.9061 -4.0927 2.2461 16 6 -2.0462 -4.8008 2.1158 17 6 -2.4550 -4.9319 0.7855 18 6 -3.6149 -5.6355 0.4703 19 6 -4.3701 -6.2096 1.4686 20 6 -3.9766 -6.0876 2.7929 21 6 -2.8360 -5.3975 3.1221 22 17 -2.3622 -5.2581 4.7864 23 16 -1.2947 -4.0888 -0.2380 24 1 -0.4850 -0.8371 -0.0713 25 1 2.6251 -3.1993 -1.6463 26 1 2.9891 -3.7698 0.0000 27 1 -3.9231 -5.7312 -0.5604 28 1 -5.2688 -6.7548 1.2203 29 1 -4.5721 -6.5400 3.5720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228951208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:51 Heat of formation + Delta-G solvation = -22.216267 kcal Electronic energy + Delta-G solvation = -19270.971784 eV Core-core repulsion = 15950.785502 eV Total energy + Delta-G solvation = -3320.186282 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31466 -40.17303 -37.78969 -37.25469 -36.87566 -35.40452 -32.08416 -31.81188 -30.31091 -26.96847 -25.65455 -24.28971 -23.37716 -22.59219 -20.21861 -19.29131 -18.68364 -17.62772 -17.21428 -16.69345 -16.15122 -15.95090 -15.75118 -15.48360 -15.29658 -14.91472 -14.20332 -14.14048 -13.77977 -13.57284 -13.19534 -13.06366 -12.82748 -12.58504 -12.39088 -12.15465 -11.96054 -11.87895 -11.56606 -11.32816 -11.05651 -10.87817 -10.65277 -10.57977 -9.18663 -9.05619 -8.97929 -6.88775 -0.57208 -0.06008 -0.04956 0.49862 1.14329 1.15953 1.34010 1.47569 1.55599 1.77821 1.80326 2.44199 2.52452 2.96814 3.47991 3.70205 3.78344 3.88070 4.02439 4.19069 4.22113 4.40127 4.56345 4.60611 4.97260 5.06770 5.20287 5.30441 5.61765 5.78861 5.92780 6.13867 6.71967 7.00784 8.35570 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.004892 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.980012 B = 5722.106718 C = 6452.827381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.009 4.009 3 Si 1.123 2.877 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.604 4.604 8 H 0.083 0.917 9 C 0.170 3.830 10 H 0.041 0.959 11 C -0.034 4.034 12 Cl -0.193 7.193 13 O -0.295 6.295 14 C 0.317 3.683 15 N -0.540 5.540 16 C 0.092 3.908 17 C -0.208 4.208 18 C -0.060 4.060 19 C -0.091 4.091 20 C -0.082 4.082 21 C -0.025 4.025 22 Cl -0.064 7.064 23 S 0.051 5.949 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.160 0.840 28 H 0.193 0.807 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -11.316 -1.254 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.213 4.213 3 Si 0.941 3.059 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.639 4.639 8 H 0.102 0.898 9 C 0.117 3.883 10 H 0.059 0.941 11 C -0.097 4.097 12 Cl -0.166 7.166 13 O -0.202 6.202 14 C -0.003 4.003 15 N -0.272 5.272 16 C -0.028 4.028 17 C -0.327 4.327 18 C -0.083 4.083 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.055 4.055 22 Cl -0.035 7.035 23 S 0.301 5.699 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.120 0.880 27 H 0.177 0.823 28 H 0.210 0.790 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.347 -9.351 -1.558 11.408 hybrid contribution 0.056 -1.843 0.862 2.036 sum -6.290 -11.194 -0.696 12.859 Atomic orbital electron populations 1.70923 1.08267 1.31071 1.42286 1.27816 0.96148 1.07333 0.90034 0.82883 0.74243 0.69927 0.78826 1.20848 1.19529 1.17471 1.22228 0.96081 0.89495 1.56106 0.89842 1.21240 0.94082 0.93178 0.79803 0.94133 1.25200 0.96272 0.83382 1.04854 1.98707 1.76719 1.44291 1.96906 1.86607 1.32372 1.62217 1.39038 1.25976 0.91717 0.92370 0.90285 1.65952 1.12759 1.19418 1.29068 1.18796 0.91903 0.99354 0.92717 1.23956 1.03960 1.09432 0.95330 1.20863 0.90330 0.94740 1.02367 1.21532 1.00731 0.98946 0.89993 1.21314 0.93039 0.96582 0.99330 1.20718 0.97342 1.03555 0.83857 1.98347 1.92356 1.96982 1.15864 1.85280 1.18572 1.55249 1.10778 0.92875 0.85311 0.87987 0.82288 0.78995 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.93 13.63 21.45 0.29 -50.64 15 2 C -0.01 -0.45 5.45 84.65 0.46 0.01 15 3 Si 1.12 44.70 29.91 68.60 2.05 46.75 15 4 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 6 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 7 C -0.60 -30.48 8.69 25.60 0.22 -30.26 15 8 H 0.08 3.96 7.81 -2.91 -0.02 3.93 15 9 C 0.17 8.06 1.78 29.85 0.05 8.11 15 10 H 0.04 2.03 5.40 -2.39 -0.01 2.02 15 11 C -0.03 -1.29 6.31 71.98 0.45 -0.83 15 12 Cl -0.19 -6.94 24.77 -2.72 -0.07 -7.01 15 13 O -0.29 -15.29 9.81 -86.15 -0.84 -16.14 15 14 C 0.32 15.17 7.59 130.71 0.99 16.17 15 15 N -0.54 -25.67 10.50 -306.18 -3.22 -28.89 15 16 C 0.09 3.68 6.79 39.77 0.27 3.95 15 17 C -0.21 -7.36 6.52 22.89 0.15 -7.21 15 18 C -0.06 -1.47 10.06 22.40 0.23 -1.25 15 19 C -0.09 -1.63 10.04 22.25 0.22 -1.41 15 20 C -0.08 -1.77 9.75 22.16 0.22 -1.55 15 21 C -0.02 -0.80 6.37 22.77 0.15 -0.66 15 22 Cl -0.06 -2.05 28.88 -2.72 -0.08 -2.13 15 23 S 0.05 2.04 18.13 -56.49 -1.02 1.02 15 24 H 0.26 15.23 6.80 -92.70 -0.63 14.60 15 25 H 0.13 4.26 8.14 -2.39 -0.02 4.24 15 26 H 0.10 3.70 8.14 -2.38 -0.02 3.68 15 27 H 0.16 2.93 8.06 -2.91 -0.02 2.90 15 28 H 0.19 1.49 8.06 -2.91 -0.02 1.46 15 29 H 0.18 2.48 8.06 -2.91 -0.02 2.46 15 Total: -1.00 -66.97 296.78 1.87 -65.10 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.35 Total: 6.87 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 3.41 Total: -14.92 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -2.92 Total: -79.53 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.84 Total: -16.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.05 Total: 46.75 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.02 Total: 1.02 kcal Atomic # 17 Polarization: -9.00 SS G_CDS: -0.15 Total: -9.14 kcal Total: -66.97 1.87 -65.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228951208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.884 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds