Wall clock time and date at job start Tue Mar 31 2020 12:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35908 * 117.00063 * 2 1 4 4 C 1.38758 * 120.03279 * 359.97438 * 3 2 1 5 5 C 1.38141 * 119.99938 * 179.97438 * 4 3 2 6 6 C 1.38318 * 120.07179 * 0.02562 * 5 4 3 7 7 Br 1.89106 * 119.96505 * 180.02562 * 6 5 4 8 8 C 1.38539 * 120.06737 * 359.97438 * 6 5 4 9 9 F 1.35111 * 120.00241 * 179.97438 * 8 6 5 10 10 C 1.38376 * 120.00069 * 359.75122 * 8 6 5 11 11 C 1.50697 * 120.03902 * 180.25752 * 10 8 6 12 12 N 1.46504 * 109.46572 * 270.24874 * 11 10 8 13 13 C 1.46498 * 120.00083 * 269.99956 * 12 11 10 14 14 C 1.36939 * 119.99834 * 90.00522 * 12 11 10 15 15 H 1.07991 * 120.00221 * 22.16683 * 14 12 11 16 16 C 1.38814 * 119.99635 * 202.17257 * 14 12 11 17 17 N 1.31616 * 120.00192 * 11.19597 * 16 14 12 18 18 Si 1.86805 * 119.99695 * 191.19490 * 16 14 12 19 19 H 1.48495 * 109.46859 * 60.00501 * 18 16 14 20 20 H 1.48500 * 109.46766 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47415 * 299.99948 * 18 16 14 22 22 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47176 * 60.00191 * 1 2 3 24 24 H 1.09000 * 109.47286 * 300.00362 * 1 2 3 25 25 H 1.07996 * 120.00142 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.96312 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47227 * 30.24394 * 11 10 8 28 28 H 1.09003 * 109.47126 * 150.25320 * 11 10 8 29 29 H 1.08994 * 109.47380 * 94.59593 * 13 12 11 30 30 H 1.09002 * 109.47007 * 214.59495 * 13 12 11 31 31 H 1.09002 * 109.46727 * 334.59574 * 13 12 11 32 32 H 0.96999 * 119.99711 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2910 2.3751 -0.0005 5 6 1.9188 3.6056 0.0000 6 6 3.3001 3.6789 0.0005 7 35 4.1565 5.3649 0.0020 8 6 4.0567 2.5184 0.0011 9 9 5.4059 2.5915 0.0011 10 6 3.4308 1.2843 0.0063 11 6 4.2531 0.0214 0.0127 12 7 4.5255 -0.3908 -1.3665 13 6 3.5986 -1.2892 -2.0592 14 6 5.6468 0.0635 -2.0080 15 1 6.4933 0.4114 -1.4348 16 6 5.6951 0.0770 -3.3953 17 7 4.5999 -0.1338 -4.0940 18 14 7.3148 0.3944 -4.2703 19 1 8.2974 -0.6510 -3.8872 20 1 7.0993 0.3574 -5.7391 21 1 7.8349 1.7295 -3.8802 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8899 25 1 0.2124 2.3192 -0.0005 26 1 1.3306 4.5113 0.0000 27 1 5.1949 0.2037 0.5302 28 1 3.7032 -0.7676 0.5259 29 1 2.8910 -0.7011 -2.6435 30 1 4.1587 -1.9479 -2.7228 31 1 3.0564 -1.8870 -1.3266 32 1 4.6337 -0.1240 -5.0634 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235484569.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:35 Heat of formation + Delta-G solvation = -42.259096 kcal Electronic energy + Delta-G solvation = -19413.710370 eV Core-core repulsion = 16142.971129 eV Total energy + Delta-G solvation = -3270.739242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.90177 -41.16922 -38.32798 -37.40848 -34.02957 -32.66950 -31.79658 -29.82008 -28.31273 -27.83085 -27.35903 -23.95158 -23.02356 -22.09438 -19.37002 -18.80939 -18.03587 -17.15335 -16.96476 -16.87579 -16.38544 -16.28770 -15.52632 -15.43774 -15.09594 -14.92154 -13.87769 -13.82763 -13.57036 -13.51460 -12.92307 -12.85203 -12.79977 -12.53672 -12.43492 -12.17663 -12.07696 -11.91382 -11.85262 -11.29175 -11.25714 -10.64417 -9.76171 -9.16810 -8.80935 -7.83596 -5.29763 0.03913 0.14196 0.56532 1.43388 1.45634 1.51592 2.23897 2.43328 2.54713 3.29417 3.32112 3.70549 3.81083 3.88115 4.19555 4.26345 4.41930 4.47651 4.48845 4.78999 4.84763 4.90684 4.92686 4.99094 5.05084 5.20513 5.36460 5.60950 5.64030 5.74659 6.31139 6.39744 7.15064 7.84301 8.28419 9.19063 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.007353 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.165764 B = 3807.138645 C = 5570.590798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.173 3.827 4 C -0.209 4.209 5 C -0.030 4.030 6 C -0.183 4.183 7 Br -0.039 7.039 8 C 0.151 3.849 9 F -0.133 7.133 10 C -0.175 4.175 11 C 0.194 3.806 12 N -0.602 5.602 13 C 0.191 3.809 14 C -0.254 4.254 15 H 0.065 0.935 16 C -0.049 4.049 17 N -0.933 5.933 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.281 1.281 22 H 0.118 0.882 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.177 0.823 26 H 0.172 0.828 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.000 1.000 30 H 0.016 0.984 31 H 0.030 0.970 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 7.813 11.185 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.125 3.875 4 C -0.228 4.228 5 C -0.050 4.050 6 C -0.264 4.264 7 Br 0.046 6.954 8 C 0.129 3.871 9 F -0.111 7.111 10 C -0.180 4.180 11 C 0.068 3.932 12 N -0.324 5.324 13 C 0.047 3.953 14 C -0.384 4.384 15 H 0.082 0.918 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.788 3.212 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.207 1.207 22 H 0.136 0.864 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.194 0.806 26 H 0.190 0.810 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.300 8.171 10.999 17.141 hybrid contribution 0.895 0.001 -0.952 1.307 sum -9.404 8.171 10.047 16.005 Atomic orbital electron populations 1.23448 0.75897 1.05848 1.02636 1.86128 1.23837 1.25879 1.87434 1.18667 0.90470 0.85794 0.92574 1.21562 1.01967 0.90379 1.08923 1.21006 0.90362 0.99540 0.94055 1.21878 0.96521 0.90132 1.17832 1.96606 1.80477 1.20247 1.98057 1.17111 0.77001 0.92940 1.00078 1.91487 1.29373 1.96941 1.93334 1.20390 0.93730 0.96450 1.07479 1.19724 0.95894 0.90964 0.86668 1.44271 1.24716 1.52053 1.11322 1.20442 0.91230 0.90844 0.92830 1.19418 0.92340 1.37256 0.89416 0.91753 1.25712 0.99796 1.01389 0.97480 1.70223 1.27017 1.55576 1.05162 0.85448 0.80220 0.78261 0.77245 1.20115 1.21651 1.20750 0.86401 0.91989 0.90159 0.80605 0.81024 0.93267 0.90713 0.98151 0.96515 0.95188 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -9.78 9.54 -92.52 -0.88 -10.67 16 3 C 0.17 5.79 6.66 22.50 0.15 5.94 16 4 C -0.21 -5.43 9.04 22.37 0.20 -5.22 16 5 C -0.03 -0.79 9.78 22.27 0.22 -0.58 16 6 C -0.18 -6.21 6.23 22.36 0.14 -6.07 16 7 Br -0.04 -1.17 33.28 -20.37 -0.68 -1.85 16 8 C 0.15 6.15 7.21 22.37 0.16 6.31 16 9 F -0.13 -5.95 15.94 44.97 0.72 -5.23 16 10 C -0.17 -7.08 5.48 -19.73 -0.11 -7.19 16 11 C 0.19 8.49 5.43 85.63 0.47 8.95 16 12 N -0.60 -31.51 2.91 -731.31 -2.13 -33.64 16 13 C 0.19 9.75 9.01 127.77 1.15 10.90 16 14 C -0.25 -14.57 9.68 84.03 0.81 -13.76 16 15 H 0.06 3.69 7.84 -2.92 -0.02 3.67 16 16 C -0.05 -2.83 5.14 84.86 0.44 -2.39 16 17 N -0.93 -56.49 10.56 21.65 0.23 -56.26 16 18 Si 0.96 47.18 29.57 68.60 2.03 49.21 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 22 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 24 H 0.08 1.03 7.66 -2.39 -0.02 1.02 16 25 H 0.18 3.01 6.30 -2.91 -0.02 2.99 16 26 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.05 2.17 7.54 -2.39 -0.02 2.15 16 28 H 0.07 2.96 7.25 -2.39 -0.02 2.94 16 29 H 0.00 0.01 7.40 -2.39 -0.02 -0.01 16 30 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 31 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -69.32 297.76 5.17 -64.16 By element: Atomic # 1 Polarization: -5.15 SS G_CDS: 1.14 Total: -4.01 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.74 Total: -1.70 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.90 Total: -89.90 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.88 Total: -10.67 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.72 Total: -5.23 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -0.68 Total: -1.85 kcal Total: -69.32 5.17 -64.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235484569.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.897 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds