Wall clock time and date at job start Tue Mar 31 2020 11:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39583 * 120.45986 * 318.83719 * 3 2 1 5 5 C 1.37704 * 120.18797 * 179.97438 * 4 3 2 6 6 C 1.39828 * 121.16890 * 0.04252 * 5 4 3 7 7 C 1.48290 * 119.53364 * 180.02562 * 6 5 4 8 8 C 1.39410 * 120.11389 * 129.72494 * 7 6 5 9 9 C 1.37961 * 119.89178 * 179.71932 * 8 7 6 10 10 C 1.38489 * 120.14380 * 0.55452 * 9 8 7 11 11 Cl 1.73596 * 119.87926 * 179.74295 * 10 9 8 12 12 C 1.38398 * 120.23892 * 359.72021 * 10 9 8 13 13 C 1.38129 * 120.10064 * 0.02562 * 12 10 9 14 14 Cl 1.73602 * 120.07405 * 179.97438 * 13 12 10 15 15 C 1.38616 * 120.92984 * 359.97438 * 6 5 4 16 16 C 1.40601 * 119.72673 * 359.71718 * 15 6 5 17 17 C 1.40846 * 120.54917 * 180.29648 * 16 15 6 18 18 H 1.08001 * 119.99849 * 204.62785 * 17 16 15 19 19 C 1.40233 * 120.00203 * 24.63289 * 17 16 15 20 20 N 1.30662 * 119.99807 * 17.30027 * 19 17 16 21 21 Si 1.86802 * 119.99818 * 197.30044 * 19 17 16 22 22 H 1.48494 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47003 * 120.00095 * 21 19 17 24 24 H 1.48505 * 109.46902 * 239.99858 * 21 19 17 25 25 H 1.08002 * 119.90545 * 359.97121 * 4 3 2 26 26 H 1.07997 * 119.41096 * 180.02562 * 5 4 3 27 27 H 1.07993 * 120.05235 * 359.97438 * 8 7 6 28 28 H 1.08003 * 119.92573 * 180.25156 * 9 8 7 29 29 H 1.07992 * 119.95150 * 180.02562 * 12 10 9 30 30 H 1.07996 * 120.14031 * 180.02562 * 15 6 5 31 31 H 0.96999 * 119.99251 * 184.52295 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.9048 0.7919 5 6 4.6530 -0.8997 0.7872 6 6 5.3706 0.0042 -0.0023 7 6 6.8531 -0.0225 0.0201 8 6 7.5700 -0.0646 -1.1748 9 6 8.9492 -0.0834 -1.1488 10 6 9.6222 -0.0722 0.0615 11 17 11.3577 -0.1027 0.0863 12 6 8.9162 -0.0362 1.2513 13 6 7.5352 -0.0118 1.2368 14 17 6.6502 0.0327 2.7297 15 6 4.7157 0.9240 -0.8063 16 6 3.3103 0.9482 -0.8359 17 6 2.6271 1.8713 -1.6513 18 1 1.6199 2.1706 -1.4014 19 6 3.2547 2.4019 -2.7876 20 7 4.3100 1.8139 -3.2855 21 14 2.5818 3.9491 -3.5894 22 1 1.3887 4.4167 -2.8392 23 1 3.6232 5.0077 -3.5737 24 1 2.1985 3.6526 -4.9932 25 1 2.7423 -1.6115 1.4102 26 1 5.1881 -1.6061 1.4045 27 1 7.0466 -0.0783 -2.1193 28 1 9.5052 -0.1119 -2.0743 29 1 9.4457 -0.0271 2.1924 30 1 5.2827 1.6160 -1.4113 31 1 4.7828 2.2161 -4.0309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235964062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:54 Heat of formation + Delta-G solvation = 37.085138 kcal Electronic energy + Delta-G solvation = -20085.985077 eV Core-core repulsion = 16768.759441 eV Total energy + Delta-G solvation = -3317.225637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64651 -39.14825 -37.67693 -37.19567 -36.90284 -35.81250 -33.30515 -31.96853 -31.58103 -29.80548 -27.53941 -24.86262 -23.92398 -22.67187 -22.24966 -19.52028 -18.92891 -18.26726 -17.23320 -16.75488 -16.52007 -15.70699 -15.55641 -15.10204 -14.86361 -14.76665 -14.51263 -14.45157 -14.18898 -13.51218 -13.44336 -13.28925 -13.13840 -13.02826 -12.87806 -12.73102 -12.45809 -12.35164 -11.92523 -11.91570 -11.88480 -11.52471 -11.36811 -11.13146 -10.00256 -9.80561 -9.47509 -9.04470 -8.76460 -6.50307 -0.24714 0.14433 0.52805 0.89375 1.01933 1.37471 1.38593 1.49300 1.51899 2.05161 2.15490 2.26796 2.58044 2.69215 3.59182 3.62209 3.77328 3.82575 4.04384 4.26310 4.37940 4.42559 4.76468 4.80202 4.91211 4.99458 5.08363 5.12094 5.23173 5.37241 5.47194 5.59355 5.79654 5.94256 6.05187 6.14968 6.43664 6.67222 6.78482 6.98261 8.09780 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.004486 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.611919 B = 6240.781281 C = 7851.186115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.304 3.696 3 C -0.205 4.205 4 C -0.028 4.028 5 C -0.211 4.211 6 C -0.017 4.017 7 C -0.030 4.030 8 C -0.086 4.086 9 C -0.098 4.098 10 C -0.032 4.032 11 Cl -0.054 7.054 12 C -0.102 4.102 13 C -0.026 4.026 14 Cl -0.052 7.052 15 C -0.150 4.150 16 C 0.130 3.870 17 C -0.464 4.464 18 H 0.066 0.934 19 C 0.050 3.950 20 N -0.780 5.780 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.251 1.251 24 H -0.263 1.263 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.123 0.877 31 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.881 -1.478 2.956 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.004 4.004 3 C -0.211 4.211 4 C -0.049 4.049 5 C -0.231 4.231 6 C -0.018 4.018 7 C -0.031 4.031 8 C -0.104 4.104 9 C -0.117 4.117 10 C -0.059 4.059 11 Cl -0.025 7.025 12 C -0.121 4.121 13 C -0.053 4.053 14 Cl -0.023 7.023 15 C -0.169 4.169 16 C 0.125 3.875 17 C -0.491 4.491 18 H 0.084 0.916 19 C -0.171 4.171 20 N -0.403 5.403 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.174 1.174 24 H -0.188 1.188 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.161 0.839 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.141 0.859 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.348 -1.520 2.860 14.709 hybrid contribution -0.184 0.621 -0.263 0.698 sum 14.164 -0.899 2.598 14.428 Atomic orbital electron populations 1.80994 1.13289 1.12910 1.14046 1.26055 0.93020 0.90777 0.90549 1.17204 0.82865 1.06831 1.14209 1.20623 0.94020 0.95012 0.95241 1.20392 0.92734 1.04231 1.05709 1.18572 0.90313 0.96322 0.96618 1.19071 0.93125 0.98703 0.92241 1.21372 0.93481 0.97889 0.97679 1.21283 0.93581 0.98959 0.97858 1.20811 0.85298 1.05451 0.94372 1.98371 1.08372 1.96861 1.98893 1.20930 0.91135 1.01064 0.99005 1.20890 0.91877 1.05280 0.87283 1.98374 1.75825 1.96644 1.31487 1.21255 0.93059 1.01281 1.01322 1.18595 0.92119 0.88205 0.88597 1.19843 1.01311 1.21042 1.06915 0.91595 1.26602 0.94641 0.99940 0.95903 1.69673 1.15590 1.35386 1.19664 0.85306 0.79664 0.77627 0.78285 1.19451 1.17432 1.18782 0.85890 0.86048 0.83911 0.82127 0.82324 0.85939 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.05 18.54 19.00 0.35 -25.70 16 2 C 0.30 14.47 14.28 88.33 1.26 15.73 16 3 C -0.20 -9.31 5.95 -19.54 -0.12 -9.43 16 4 C -0.03 -1.11 9.74 22.47 0.22 -0.89 16 5 C -0.21 -7.74 8.09 22.53 0.18 -7.56 16 6 C -0.02 -0.65 5.11 -20.13 -0.10 -0.75 16 7 C -0.03 -0.97 5.45 -20.02 -0.11 -1.08 16 8 C -0.09 -2.41 9.47 22.49 0.21 -2.20 16 9 C -0.10 -2.22 9.81 22.26 0.22 -2.00 16 10 C -0.03 -0.71 6.32 22.37 0.14 -0.57 16 11 Cl -0.05 -1.00 28.95 -2.72 -0.08 -1.08 16 12 C -0.10 -2.37 9.60 22.28 0.21 -2.16 16 13 C -0.03 -0.74 6.26 22.55 0.14 -0.60 16 14 Cl -0.05 -1.47 25.93 -2.72 -0.07 -1.54 16 15 C -0.15 -6.54 8.11 22.94 0.19 -6.35 16 16 C 0.13 6.22 5.73 -19.90 -0.11 6.11 16 17 C -0.46 -22.81 8.58 23.39 0.20 -22.61 16 18 H 0.07 3.40 7.37 -2.91 -0.02 3.38 16 19 C 0.05 2.22 5.16 85.35 0.44 2.66 16 20 N -0.78 -33.81 10.94 21.87 0.24 -33.57 16 21 Si 0.97 34.57 29.60 68.60 2.03 36.60 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 24 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 25 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 26 H 0.12 3.94 7.07 -2.91 -0.02 3.92 16 27 H 0.14 4.17 8.03 -2.91 -0.02 4.15 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.12 5.45 6.13 -2.91 -0.02 5.43 16 31 H 0.30 11.46 8.30 -92.71 -0.77 10.69 16 Total: -1.00 -51.54 314.00 6.65 -44.89 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.20 Total: 12.10 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 2.98 Total: -31.70 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.59 Total: -59.27 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.15 Total: -2.62 kcal Total: -51.54 6.65 -44.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235964062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.980 kcal (2) G-P(sol) polarization free energy of solvation -51.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds