Wall clock time and date at job start Tue Mar 31 2020 12:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46897 * 2 1 4 4 C 1.46896 * 111.00028 * 293.05016 * 3 2 1 5 5 C 1.50697 * 109.47149 * 160.04576 * 4 3 2 6 6 H 1.08004 * 119.99701 * 4.89347 * 5 4 3 7 7 C 1.37876 * 120.00364 * 184.89717 * 5 4 3 8 8 N 1.31515 * 120.00205 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99667 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46795 * 90.00234 * 9 7 5 11 11 H 1.48500 * 109.47066 * 210.00291 * 9 7 5 12 12 H 1.48493 * 109.47211 * 330.00073 * 9 7 5 13 13 C 1.46900 * 110.99653 * 169.09999 * 3 2 1 14 14 C 1.50695 * 109.47360 * 293.95019 * 13 3 2 15 15 S 1.75881 * 125.19567 * 269.97875 * 14 13 3 16 16 C 1.75893 * 90.97900 * 180.02562 * 15 14 13 17 17 Br 1.89095 * 125.20545 * 179.97438 * 16 15 14 18 18 C 1.33475 * 109.58309 * 359.73303 * 16 15 14 19 19 C 1.33364 * 125.19159 * 90.00198 * 14 13 3 20 20 C 1.50704 * 122.53518 * 359.97438 * 19 14 13 21 21 H 1.08997 * 109.46924 * 179.51667 * 1 2 3 22 22 H 1.08998 * 109.47008 * 299.51539 * 1 2 3 23 23 H 1.09000 * 109.46895 * 59.51524 * 1 2 3 24 24 H 1.08999 * 109.47151 * 239.99824 * 2 1 3 25 25 H 1.09005 * 109.47395 * 119.99815 * 2 1 3 26 26 H 1.08996 * 109.47682 * 280.04902 * 4 3 2 27 27 H 1.09004 * 109.47020 * 40.04905 * 4 3 2 28 28 H 0.96997 * 119.99585 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47178 * 173.95000 * 13 3 2 30 30 H 1.08999 * 109.47603 * 53.95314 * 13 3 2 31 31 H 1.07996 * 122.55628 * 180.24242 * 18 16 15 32 32 H 1.08997 * 109.47420 * 90.00153 * 20 19 14 33 33 H 1.08998 * 109.46921 * 329.99527 * 20 19 14 34 34 H 1.09000 * 109.46840 * 210.00014 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6888 2.0603 -1.2619 5 6 1.7473 3.5530 -1.0632 6 1 2.0808 3.9595 -0.1198 7 6 1.3750 4.3997 -2.0856 8 7 1.4266 5.7024 -1.9124 9 14 0.7989 3.6966 -3.7176 10 1 -0.6724 3.4988 -3.6795 11 1 1.1434 4.6393 -4.8120 12 1 1.4675 2.3928 -3.9585 13 6 3.4648 1.4324 0.2593 14 6 3.7394 0.9552 1.6621 15 16 3.7936 1.9812 3.0896 16 6 4.1492 0.5937 4.1104 17 35 4.4126 0.6561 5.9819 18 6 4.1995 -0.5108 3.3626 19 6 3.9788 -0.3097 2.0106 20 6 4.0014 -1.4358 1.0094 21 1 -0.3633 -1.0276 -0.0087 22 1 -0.3633 0.5063 0.8943 23 1 -0.3633 0.5213 -0.8856 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.4053 1.7676 -2.0294 27 1 0.6845 1.7745 -1.5745 28 1 1.1650 6.2980 -2.6318 29 1 3.8205 2.4567 0.1479 30 1 3.9829 0.7886 -0.4514 31 1 4.4007 -1.4864 3.7797 32 1 5.0128 -1.5572 0.6218 33 1 3.3227 -1.2055 0.1882 34 1 3.6848 -2.3593 1.4942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236827237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:33 Heat of formation + Delta-G solvation = 39.311688 kcal Electronic energy + Delta-G solvation = -16797.920551 eV Core-core repulsion = 14096.931661 eV Total energy + Delta-G solvation = -2700.988891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.93880 -36.73494 -32.75538 -32.27311 -30.82056 -29.81541 -28.70927 -26.68448 -23.89937 -22.65777 -22.11838 -19.91488 -18.18869 -17.17436 -16.82248 -15.39158 -15.27621 -14.49979 -14.17669 -13.83652 -13.53399 -13.29085 -12.84293 -12.54277 -12.45726 -12.40778 -12.12516 -11.73549 -11.51811 -11.23070 -11.02612 -10.86525 -10.64148 -10.55910 -10.45030 -10.24996 -10.08789 -9.88752 -9.36203 -8.59189 -8.42078 -8.18256 -7.45844 -6.07849 -4.05145 0.91756 1.18729 1.89726 2.13714 2.63460 3.25237 3.33353 3.34000 4.38694 4.70325 5.01205 5.14619 5.24570 5.31581 5.50774 5.55318 5.64045 5.68881 5.80040 5.86612 5.95516 6.02050 6.11267 6.21927 6.40801 6.41146 6.57484 6.65675 6.79342 6.84346 7.57462 7.82312 7.92041 8.61634 9.01057 9.53664 11.05340 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.003818 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.030039 B = 7332.717953 C = 8015.042356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 N -0.519 5.519 4 C 0.160 3.840 5 C -0.509 4.509 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.123 3.877 14 C -0.131 4.131 15 S 0.192 5.808 16 C -0.226 4.226 17 Br -0.007 7.007 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.105 4.105 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.022 0.978 25 H 0.076 0.924 26 H -0.011 1.011 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -14.545 12.324 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 N -0.244 5.244 4 C 0.034 3.966 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.006 4.006 14 C -0.251 4.251 15 S 0.458 5.542 16 C -0.422 4.422 17 Br 0.076 6.924 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.164 4.164 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.007 0.993 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.110 -12.484 13.582 19.434 hybrid contribution 0.146 -2.156 -2.123 3.029 sum 6.256 -14.640 11.459 19.616 Atomic orbital electron populations 1.21799 0.95413 1.00224 1.03011 1.22394 0.96134 0.90803 0.99693 1.62003 1.11108 1.13517 1.37758 1.20265 0.95533 0.95672 0.85117 1.21012 1.44352 0.88015 1.01323 0.90216 1.24884 0.95323 0.94708 0.98279 1.69890 1.48600 1.02135 1.33118 0.86909 0.79589 0.79249 0.84278 1.20128 1.21176 1.19348 1.20548 0.90393 1.02145 0.87509 1.24736 1.04389 0.95854 1.00121 1.84670 1.67038 1.07056 0.95483 1.26013 1.19436 1.01505 0.95271 1.96632 1.96101 1.98795 1.00855 1.19926 1.00960 0.98296 0.92503 1.18671 1.06181 0.94821 0.94145 1.20817 1.02656 0.95176 0.97706 0.93355 0.91983 0.92310 0.95969 0.90565 0.99304 0.94996 0.92642 0.88285 0.93569 0.84211 0.91549 0.90218 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C 0.04 0.62 4.09 -3.82 -0.02 0.61 16 3 N -0.52 -10.34 4.41 -237.52 -1.05 -11.39 16 4 C 0.16 3.71 3.68 -4.98 -0.02 3.69 16 5 C -0.51 -14.02 9.17 -34.44 -0.32 -14.34 16 6 H 0.08 2.41 7.91 -52.48 -0.42 1.99 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.87 21.01 27.37 -169.99 -4.65 16.35 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.21 6.68 56.52 0.38 -5.83 16 13 C 0.12 2.22 4.96 -4.98 -0.02 2.20 16 14 C -0.13 -2.07 5.46 -36.01 -0.20 -2.27 16 15 S 0.19 2.97 23.33 -107.50 -2.51 0.46 16 16 C -0.23 -3.07 6.97 29.07 0.20 -2.87 16 17 Br -0.01 -0.09 34.07 -68.01 -2.32 -2.40 16 18 C -0.08 -1.05 9.91 -41.17 -0.41 -1.46 16 19 C -0.13 -1.71 4.92 -106.24 -0.52 -2.23 16 20 C -0.10 -1.18 8.81 36.01 0.32 -0.86 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.01 6.27 -51.93 -0.33 0.68 16 24 H 0.02 0.35 7.46 -51.93 -0.39 -0.04 16 25 H 0.08 1.15 4.62 -51.93 -0.24 0.91 16 26 H -0.01 -0.25 7.39 -51.93 -0.38 -0.63 16 27 H 0.03 0.74 5.08 -51.93 -0.26 0.48 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.10 1.99 7.34 -51.93 -0.38 1.61 16 30 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.97 4.02 -51.93 -0.21 0.76 16 34 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -29.02 303.70 -10.14 -39.16 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.26 Total: -2.83 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.71 Total: -17.62 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.27 Total: -37.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.65 Total: 16.35 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.51 Total: 0.46 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.32 Total: -2.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.02 -10.14 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236827237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.476 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds