Wall clock time and date at job start Tue Mar 31 2020 12:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46897 * 2 1 4 4 C 1.46896 * 111.00028 * 293.05016 * 3 2 1 5 5 C 1.50697 * 109.47149 * 160.04576 * 4 3 2 6 6 H 1.08004 * 119.99701 * 4.89347 * 5 4 3 7 7 C 1.37876 * 120.00364 * 184.89717 * 5 4 3 8 8 N 1.31515 * 120.00205 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99667 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46795 * 90.00234 * 9 7 5 11 11 H 1.48500 * 109.47066 * 210.00291 * 9 7 5 12 12 H 1.48493 * 109.47211 * 330.00073 * 9 7 5 13 13 C 1.46900 * 110.99653 * 169.09999 * 3 2 1 14 14 C 1.50695 * 109.47360 * 293.95019 * 13 3 2 15 15 S 1.75881 * 125.19567 * 269.97875 * 14 13 3 16 16 C 1.75893 * 90.97900 * 180.02562 * 15 14 13 17 17 Br 1.89095 * 125.20545 * 179.97438 * 16 15 14 18 18 C 1.33475 * 109.58309 * 359.73303 * 16 15 14 19 19 C 1.33364 * 125.19159 * 90.00198 * 14 13 3 20 20 C 1.50704 * 122.53518 * 359.97438 * 19 14 13 21 21 H 1.08997 * 109.46924 * 179.51667 * 1 2 3 22 22 H 1.08998 * 109.47008 * 299.51539 * 1 2 3 23 23 H 1.09000 * 109.46895 * 59.51524 * 1 2 3 24 24 H 1.08999 * 109.47151 * 239.99824 * 2 1 3 25 25 H 1.09005 * 109.47395 * 119.99815 * 2 1 3 26 26 H 1.08996 * 109.47682 * 280.04902 * 4 3 2 27 27 H 1.09004 * 109.47020 * 40.04905 * 4 3 2 28 28 H 0.96997 * 119.99585 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47178 * 173.95000 * 13 3 2 30 30 H 1.08999 * 109.47603 * 53.95314 * 13 3 2 31 31 H 1.07996 * 122.55628 * 180.24242 * 18 16 15 32 32 H 1.08997 * 109.47420 * 90.00153 * 20 19 14 33 33 H 1.08998 * 109.46921 * 329.99527 * 20 19 14 34 34 H 1.09000 * 109.46840 * 210.00014 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6888 2.0603 -1.2619 5 6 1.7473 3.5530 -1.0632 6 1 2.0808 3.9595 -0.1198 7 6 1.3750 4.3997 -2.0856 8 7 1.4266 5.7024 -1.9124 9 14 0.7989 3.6966 -3.7176 10 1 -0.6724 3.4988 -3.6795 11 1 1.1434 4.6393 -4.8120 12 1 1.4675 2.3928 -3.9585 13 6 3.4648 1.4324 0.2593 14 6 3.7394 0.9552 1.6621 15 16 3.7936 1.9812 3.0896 16 6 4.1492 0.5937 4.1104 17 35 4.4126 0.6561 5.9819 18 6 4.1995 -0.5108 3.3626 19 6 3.9788 -0.3097 2.0106 20 6 4.0014 -1.4358 1.0094 21 1 -0.3633 -1.0276 -0.0087 22 1 -0.3633 0.5063 0.8943 23 1 -0.3633 0.5213 -0.8856 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.4053 1.7676 -2.0294 27 1 0.6845 1.7745 -1.5745 28 1 1.1650 6.2980 -2.6318 29 1 3.8205 2.4567 0.1479 30 1 3.9829 0.7886 -0.4514 31 1 4.4007 -1.4864 3.7797 32 1 5.0128 -1.5572 0.6218 33 1 3.3227 -1.2055 0.1882 34 1 3.6848 -2.3593 1.4942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236827237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:31 Heat of formation + Delta-G solvation = 21.962217 kcal Electronic energy + Delta-G solvation = -16798.672881 eV Core-core repulsion = 14096.931661 eV Total energy + Delta-G solvation = -2701.741220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.15412 -38.12663 -34.74933 -33.48851 -32.14058 -31.08489 -30.06932 -28.20081 -25.24993 -24.19134 -23.39509 -21.44855 -19.30534 -19.02716 -18.26781 -16.88721 -16.58741 -15.94181 -15.82069 -15.22285 -14.80871 -14.64066 -14.36764 -14.09262 -13.63350 -13.50761 -13.31439 -13.09127 -12.87943 -12.78104 -12.55054 -12.17848 -12.13188 -11.91724 -11.72119 -11.68674 -11.46345 -11.38587 -11.26333 -10.74748 -9.57922 -9.35371 -8.97239 -8.26222 -6.28990 -0.21092 0.09329 0.79747 0.99987 1.35736 1.36671 1.47169 1.56952 2.35399 3.06227 3.27847 3.80359 4.10204 4.19496 4.23567 4.38197 4.52244 4.57428 4.67490 4.72908 4.81181 4.84672 4.88857 4.93554 5.05451 5.06311 5.20252 5.35495 5.39556 5.53342 5.60221 6.00683 6.34708 6.66263 6.76972 7.34186 8.90773 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.003818 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.030039 B = 7332.717953 C = 8015.042356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.039 3.961 3 N -0.539 5.539 4 C 0.171 3.829 5 C -0.512 4.512 6 H 0.033 0.967 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.132 3.868 14 C -0.155 4.155 15 S 0.131 5.869 16 C -0.219 4.219 17 Br 0.013 6.987 18 C -0.078 4.078 19 C -0.105 4.105 20 C -0.106 4.106 21 H 0.083 0.917 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.093 0.907 26 H -0.009 1.009 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.172 0.828 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -18.258 12.041 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.264 5.264 4 C 0.044 3.956 5 C -0.551 4.551 6 H 0.051 0.949 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.172 1.172 13 C 0.003 3.997 14 C -0.274 4.274 15 S 0.397 5.603 16 C -0.416 4.416 17 Br 0.096 6.904 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.165 4.165 21 H 0.101 0.899 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.189 0.811 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.116 -16.224 13.318 21.863 hybrid contribution 0.213 -1.024 -1.853 2.128 sum 6.329 -17.247 11.465 21.656 Atomic orbital electron populations 1.21812 0.94997 1.02041 1.01492 1.22503 0.96446 0.88722 1.01143 1.61863 1.12642 1.15969 1.35920 1.19990 0.95812 0.92941 0.86841 1.21259 1.43433 0.90889 0.99497 0.94878 1.25831 0.95529 0.94867 1.02659 1.70060 1.50408 1.03909 1.34670 0.85752 0.79502 0.79188 0.78728 1.19086 1.20964 1.17150 1.20322 0.89387 1.00440 0.89560 1.24457 1.07625 0.96672 0.98659 1.84875 1.68655 1.09465 0.97345 1.26138 1.18798 1.00471 0.96170 1.96654 1.95963 1.98736 0.99022 1.20256 0.99747 0.99241 0.91932 1.19031 1.03320 0.94421 0.95142 1.20917 1.03538 0.95058 0.96939 0.89865 0.93364 0.93921 0.94428 0.88909 0.99105 0.94407 0.92543 0.92030 0.92067 0.81058 0.90038 0.90937 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.91 71.98 0.71 -3.60 16 2 C 0.04 1.19 4.09 86.30 0.35 1.55 16 3 N -0.54 -21.45 4.41 -905.38 -3.99 -25.44 16 4 C 0.17 7.93 3.68 85.56 0.31 8.24 16 5 C -0.51 -29.39 9.17 25.60 0.23 -29.16 16 6 H 0.03 2.15 7.91 -2.91 -0.02 2.12 16 7 C 0.01 0.47 5.47 84.65 0.46 0.94 16 8 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 9 Si 0.94 43.42 27.37 68.60 1.88 45.30 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.25 -10.48 6.68 99.48 0.66 -9.81 16 13 C 0.13 4.82 4.96 85.56 0.42 5.24 16 14 C -0.15 -4.85 5.46 24.58 0.13 -4.71 16 15 S 0.13 4.18 23.33 -56.49 -1.32 2.86 16 16 C -0.22 -5.65 6.97 66.74 0.47 -5.18 16 17 Br 0.01 0.28 34.07 -20.37 -0.69 -0.42 16 18 C -0.08 -1.75 9.91 21.24 0.21 -1.54 16 19 C -0.11 -2.60 4.92 -20.91 -0.10 -2.71 16 20 C -0.11 -1.95 8.81 71.24 0.63 -1.33 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.38 6.27 -2.39 -0.01 1.37 16 24 H 0.04 1.06 7.46 -2.39 -0.02 1.04 16 25 H 0.09 2.54 4.62 -2.38 -0.01 2.52 16 26 H -0.01 -0.40 7.39 -2.39 -0.02 -0.42 16 27 H 0.04 1.72 5.08 -2.38 -0.01 1.71 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.06 2.66 7.34 -2.39 -0.02 2.64 16 30 H 0.06 1.99 7.30 -2.39 -0.02 1.98 16 31 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.48 4.02 -2.39 -0.01 1.47 16 34 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -65.38 303.70 1.08 -64.30 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.84 Total: -32.26 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.69 Total: -84.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.32 Total: 2.86 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -0.69 Total: -0.42 kcal Total: -65.38 1.08 -64.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236827237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.261 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds