Wall clock time and date at job start Tue Mar 31 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00354 * 2 1 4 4 C 1.50695 * 109.47077 * 293.95164 * 3 2 1 5 5 H 1.08001 * 120.00460 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00178 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99996 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.46750 * 90.00079 * 8 6 4 10 10 H 1.48498 * 109.46965 * 209.99841 * 8 6 4 11 11 H 1.48497 * 109.47274 * 330.00114 * 8 6 4 12 12 C 1.46908 * 110.99879 * 123.95692 * 2 1 3 13 13 C 1.50693 * 109.47244 * 66.03832 * 12 2 1 14 14 C 1.38331 * 119.99641 * 270.25781 * 13 12 2 15 15 F 1.35105 * 120.03910 * 359.97438 * 14 13 12 16 16 C 1.38905 * 119.91909 * 180.25541 * 14 13 12 17 17 O 1.35972 * 120.05442 * 179.72492 * 16 14 13 18 18 C 1.38655 * 119.89028 * 359.74267 * 16 14 13 19 19 C 1.38170 * 119.98193 * 0.02562 * 18 16 14 20 20 C 1.38335 * 119.98768 * 90.00415 * 13 12 2 21 21 Br 1.89100 * 119.94839 * 0.02562 * 20 13 12 22 22 H 1.09000 * 109.46513 * 296.04990 * 1 2 3 23 23 H 1.08998 * 109.46640 * 56.04179 * 1 2 3 24 24 H 1.09000 * 109.47672 * 176.04764 * 1 2 3 25 25 H 1.09002 * 109.47409 * 53.95688 * 3 2 1 26 26 H 1.09004 * 109.47228 * 173.95445 * 3 2 1 27 27 H 0.96996 * 120.00277 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46677 * 306.04054 * 12 2 1 29 29 H 1.08995 * 109.47358 * 186.04607 * 12 2 1 30 30 H 0.96703 * 113.99517 * 270.02553 * 17 16 14 31 31 H 1.08006 * 120.00343 * 179.97438 * 18 16 14 32 32 H 1.07999 * 119.95837 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0741 1.5114 -2.0485 6 6 2.0279 3.3490 -1.5289 7 7 1.7147 3.9388 -2.6619 8 14 3.0024 4.2752 -0.2319 9 1 4.4546 4.0614 -0.4575 10 1 2.6953 5.7252 -0.3238 11 1 2.6320 3.7752 1.1164 12 6 1.9955 -0.7661 1.1376 13 6 1.6368 -2.2204 0.9729 14 6 0.4476 -2.7023 1.4899 15 9 -0.3925 -1.8698 2.1430 16 6 0.1211 -4.0443 1.3418 17 8 -1.0445 -4.5220 1.8537 18 6 0.9858 -4.8959 0.6714 19 6 2.1703 -4.4090 0.1526 20 6 2.4945 -3.0722 0.3002 21 35 4.1166 -2.4101 -0.4113 22 1 -0.3632 0.4513 0.9233 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5613 1.9273 0.8309 26 1 3.0798 1.3442 0.1082 27 1 1.9900 4.8547 -2.8242 28 1 1.5611 -0.3872 2.0629 29 1 3.0797 -0.6613 1.1757 30 1 -0.9721 -4.8434 2.7629 31 1 0.7340 -5.9398 0.5555 32 1 2.8437 -5.0728 -0.3692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238304057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:26 Heat of formation + Delta-G solvation = -45.881547 kcal Electronic energy + Delta-G solvation = -18856.264242 eV Core-core repulsion = 15585.367920 eV Total energy + Delta-G solvation = -3270.896323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.96244 -39.83488 -37.65845 -36.21140 -32.69241 -31.83625 -31.23261 -28.72791 -27.83308 -26.76130 -24.01829 -22.63725 -21.67220 -20.17632 -18.49839 -17.41913 -17.05674 -16.80568 -16.09196 -15.45530 -14.68774 -14.57404 -14.30204 -14.19989 -13.81709 -13.55960 -12.94395 -12.77265 -12.43549 -12.14158 -11.90799 -11.73792 -11.21215 -11.00260 -10.87024 -10.58875 -10.53441 -10.38361 -9.94736 -9.87307 -9.28556 -8.93046 -8.60369 -8.54656 -7.41243 -6.02998 -4.00086 0.68617 0.89707 1.63522 3.10731 3.29547 3.36942 3.38690 3.70380 4.14981 4.43489 4.48383 4.71370 4.83044 5.01095 5.25724 5.30105 5.39143 5.66242 5.78070 5.83330 5.92124 6.05168 6.10885 6.29856 6.39138 6.69952 6.87084 6.98067 7.28590 7.57009 7.85139 7.99305 8.66180 9.06062 9.58325 11.10113 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005587 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.930505 B = 5010.413449 C = 6225.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.515 5.515 3 C 0.164 3.836 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.077 3.923 13 C -0.058 4.058 14 C 0.085 3.915 15 F -0.124 7.124 16 C 0.083 3.917 17 O -0.486 6.486 18 C -0.119 4.119 19 C -0.088 4.088 20 C -0.057 4.057 21 Br -0.019 7.019 22 H 0.016 0.984 23 H 0.083 0.917 24 H 0.043 0.957 25 H -0.011 1.011 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.392 0.608 31 H 0.145 0.855 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -19.790 10.124 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.239 5.239 3 C 0.038 3.962 4 C -0.544 4.544 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.051 4.051 13 C -0.061 4.061 14 C 0.064 3.936 15 F -0.102 7.102 16 C 0.037 3.963 17 O -0.295 6.295 18 C -0.139 4.139 19 C -0.108 4.108 20 C -0.138 4.138 21 Br 0.067 6.933 22 H 0.034 0.966 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.007 0.993 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.248 0.752 31 H 0.162 0.838 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.995 -19.375 8.797 21.489 hybrid contribution -0.192 0.866 2.062 2.245 sum 2.803 -18.509 10.860 21.642 Atomic orbital electron populations 1.22337 0.87996 0.99905 1.01157 1.62017 1.07509 1.16487 1.37903 1.20203 0.95016 0.83494 0.97511 1.20990 1.35545 0.97146 1.00730 0.90035 1.24870 0.95811 0.97297 0.95234 1.69888 1.46909 1.13274 1.23841 0.86907 0.80978 0.79358 0.82816 1.20091 1.21203 1.19276 1.21213 1.01836 0.87703 0.94377 1.19828 0.92208 0.97584 0.96528 1.17798 0.89291 0.87907 0.98593 1.91524 1.69425 1.70849 1.78395 1.18445 0.87680 0.89916 1.00259 1.84896 1.28511 1.82402 1.33738 1.21221 0.92939 1.00336 0.99403 1.21034 0.96949 0.93567 0.99263 1.21593 0.95604 0.94837 1.01760 1.96781 1.24717 1.88092 1.83687 0.96579 0.89876 0.93783 0.99284 0.95572 0.92684 0.94044 0.88830 0.75225 0.83752 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 8.22 60.07 0.49 1.20 16 2 N -0.52 -11.05 4.74 -245.83 -1.17 -12.21 16 3 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 4 C -0.51 -14.46 9.01 -34.44 -0.31 -14.77 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 8 Si 0.87 21.59 27.47 -169.99 -4.67 16.93 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 12 C 0.08 1.37 4.50 -4.97 -0.02 1.34 16 13 C -0.06 -0.90 4.89 -104.56 -0.51 -1.41 16 14 C 0.09 1.24 5.93 -39.30 -0.23 1.01 16 15 F -0.12 -1.95 14.90 2.25 0.03 -1.92 16 16 C 0.08 0.99 6.71 -39.18 -0.26 0.73 16 17 O -0.49 -5.07 13.37 -19.65 -0.26 -5.33 16 18 C -0.12 -1.19 9.98 -39.45 -0.39 -1.58 16 19 C -0.09 -0.95 9.78 -39.57 -0.39 -1.34 16 20 C -0.06 -0.79 6.22 -39.51 -0.25 -1.04 16 21 Br -0.02 -0.27 31.77 -68.01 -2.16 -2.43 16 22 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 23 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 24 H 0.04 0.84 5.88 -51.93 -0.31 0.53 16 25 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 26 H 0.03 0.64 7.36 -51.93 -0.38 0.25 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.04 0.73 7.62 -51.92 -0.40 0.33 16 29 H 0.09 1.61 6.43 -51.93 -0.33 1.28 16 30 H 0.39 2.03 9.06 45.56 0.41 2.45 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -32.42 291.66 -7.59 -40.01 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -2.55 Total: -2.54 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.99 Total: -9.94 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.39 Total: -39.17 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.26 Total: -5.33 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.03 Total: -1.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.16 Total: -2.43 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.42 -7.59 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238304057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.871 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds