Wall clock time and date at job start Tue Mar 31 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00354 * 2 1 4 4 C 1.50695 * 109.47077 * 293.95164 * 3 2 1 5 5 H 1.08001 * 120.00460 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00178 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99996 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.46750 * 90.00079 * 8 6 4 10 10 H 1.48498 * 109.46965 * 209.99841 * 8 6 4 11 11 H 1.48497 * 109.47274 * 330.00114 * 8 6 4 12 12 C 1.46908 * 110.99879 * 123.95692 * 2 1 3 13 13 C 1.50693 * 109.47244 * 66.03832 * 12 2 1 14 14 C 1.38331 * 119.99641 * 270.25781 * 13 12 2 15 15 F 1.35105 * 120.03910 * 359.97438 * 14 13 12 16 16 C 1.38905 * 119.91909 * 180.25541 * 14 13 12 17 17 O 1.35972 * 120.05442 * 179.72492 * 16 14 13 18 18 C 1.38655 * 119.89028 * 359.74267 * 16 14 13 19 19 C 1.38170 * 119.98193 * 0.02562 * 18 16 14 20 20 C 1.38335 * 119.98768 * 90.00415 * 13 12 2 21 21 Br 1.89100 * 119.94839 * 0.02562 * 20 13 12 22 22 H 1.09000 * 109.46513 * 296.04990 * 1 2 3 23 23 H 1.08998 * 109.46640 * 56.04179 * 1 2 3 24 24 H 1.09000 * 109.47672 * 176.04764 * 1 2 3 25 25 H 1.09002 * 109.47409 * 53.95688 * 3 2 1 26 26 H 1.09004 * 109.47228 * 173.95445 * 3 2 1 27 27 H 0.96996 * 120.00277 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46677 * 306.04054 * 12 2 1 29 29 H 1.08995 * 109.47358 * 186.04607 * 12 2 1 30 30 H 0.96703 * 113.99517 * 270.02553 * 17 16 14 31 31 H 1.08006 * 120.00343 * 179.97438 * 18 16 14 32 32 H 1.07999 * 119.95837 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0741 1.5114 -2.0485 6 6 2.0279 3.3490 -1.5289 7 7 1.7147 3.9388 -2.6619 8 14 3.0024 4.2752 -0.2319 9 1 4.4546 4.0614 -0.4575 10 1 2.6953 5.7252 -0.3238 11 1 2.6320 3.7752 1.1164 12 6 1.9955 -0.7661 1.1376 13 6 1.6368 -2.2204 0.9729 14 6 0.4476 -2.7023 1.4899 15 9 -0.3925 -1.8698 2.1430 16 6 0.1211 -4.0443 1.3418 17 8 -1.0445 -4.5220 1.8537 18 6 0.9858 -4.8959 0.6714 19 6 2.1703 -4.4090 0.1526 20 6 2.4945 -3.0722 0.3002 21 35 4.1166 -2.4101 -0.4113 22 1 -0.3632 0.4513 0.9233 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5613 1.9273 0.8309 26 1 3.0798 1.3442 0.1082 27 1 1.9900 4.8547 -2.8242 28 1 1.5611 -0.3872 2.0629 29 1 3.0797 -0.6613 1.1757 30 1 -0.9721 -4.8434 2.7629 31 1 0.7340 -5.9398 0.5555 32 1 2.8437 -5.0728 -0.3692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238304057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:26 Heat of formation + Delta-G solvation = -69.882214 kcal Electronic energy + Delta-G solvation = -18857.304989 eV Core-core repulsion = 15585.367920 eV Total energy + Delta-G solvation = -3271.937070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.07199 -40.79974 -38.85827 -37.52544 -34.72755 -32.99017 -32.42541 -29.95254 -29.55281 -28.17597 -25.66618 -23.60384 -23.05802 -21.83578 -19.44562 -19.00722 -18.39931 -17.99978 -17.28473 -16.79838 -16.21840 -15.91557 -15.86766 -15.44456 -15.19739 -14.69192 -14.52350 -14.18462 -13.79748 -13.67354 -13.33678 -12.96772 -12.88562 -12.60856 -12.45302 -12.25134 -11.93630 -11.68791 -11.58469 -11.45823 -11.04073 -10.77803 -9.97498 -9.57126 -9.11746 -8.27532 -6.30715 -0.25115 -0.08070 0.61020 1.34498 1.35762 1.46153 2.17661 2.34360 2.82117 3.05327 3.18544 3.30604 3.51133 3.72096 3.93935 4.26801 4.30642 4.39759 4.51363 4.56719 4.70517 4.81105 4.91423 4.95975 4.99300 5.05240 5.10283 5.50320 5.50733 5.91744 6.21891 6.57281 6.66040 6.74672 7.32132 8.89057 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005587 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.930505 B = 5010.413449 C = 6225.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.527 5.527 3 C 0.174 3.826 4 C -0.512 4.512 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.943 3.057 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.252 1.252 12 C 0.081 3.919 13 C -0.080 4.080 14 C 0.062 3.938 15 F -0.138 7.138 16 C 0.093 3.907 17 O -0.493 6.493 18 C -0.101 4.101 19 C -0.076 4.076 20 C -0.070 4.070 21 Br -0.033 7.033 22 H 0.018 0.982 23 H 0.053 0.947 24 H 0.059 0.941 25 H -0.013 1.013 26 H 0.033 0.967 27 H 0.267 0.733 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.416 0.584 31 H 0.184 0.816 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -21.963 11.719 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.251 5.251 3 C 0.047 3.953 4 C -0.551 4.551 5 H 0.057 0.943 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.176 1.176 12 C -0.047 4.047 13 C -0.083 4.083 14 C 0.040 3.960 15 F -0.117 7.117 16 C 0.046 3.954 17 O -0.307 6.307 18 C -0.120 4.120 19 C -0.096 4.096 20 C -0.151 4.151 21 Br 0.053 6.947 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.276 0.724 31 H 0.202 0.798 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.596 -21.585 10.424 24.238 hybrid contribution -0.483 1.367 1.536 2.112 sum 3.113 -20.218 11.960 23.696 Atomic orbital electron populations 1.22164 0.87863 1.00274 0.99853 1.61880 1.07714 1.14988 1.40515 1.19952 0.95324 0.85031 0.94955 1.21178 1.34861 0.97475 1.01553 0.94339 1.25787 0.96984 0.98305 0.97582 1.70042 1.48576 1.13908 1.26245 0.85780 0.79649 0.77746 0.80205 1.18740 1.20707 1.17628 1.21157 1.01759 0.89022 0.92728 1.19616 0.93555 0.96293 0.98848 1.18070 0.89199 0.89031 0.99665 1.91479 1.69804 1.71529 1.78844 1.18560 0.88002 0.89033 0.99786 1.84839 1.27938 1.82231 1.35697 1.21630 0.91559 1.01751 0.97088 1.21409 0.97558 0.92478 0.98167 1.21715 0.95098 0.96011 1.02278 1.96765 1.25511 1.88537 1.83870 0.96317 0.92831 0.92264 0.99485 0.94854 0.92428 0.94096 0.88556 0.72399 0.79840 0.81019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 8.22 127.69 1.05 3.03 16 2 N -0.53 -22.83 4.74 -931.66 -4.42 -27.25 16 3 C 0.17 8.57 3.79 85.56 0.32 8.89 16 4 C -0.51 -30.19 9.01 25.60 0.23 -29.96 16 5 H 0.04 2.54 7.37 -2.91 -0.02 2.51 16 6 C 0.01 0.63 5.47 84.65 0.46 1.10 16 7 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 8 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 12 C 0.08 2.85 4.50 85.55 0.39 3.24 16 13 C -0.08 -2.38 4.89 -19.82 -0.10 -2.47 16 14 C 0.06 1.70 5.93 22.45 0.13 1.83 16 15 F -0.14 -4.26 14.90 44.97 0.67 -3.59 16 16 C 0.09 1.93 6.71 22.53 0.15 2.08 16 17 O -0.49 -8.69 13.37 -93.24 -1.25 -9.93 16 18 C -0.10 -1.58 9.98 22.35 0.22 -1.35 16 19 C -0.08 -1.38 9.78 22.28 0.22 -1.16 16 20 C -0.07 -1.81 6.22 22.32 0.14 -1.68 16 21 Br -0.03 -0.91 31.77 -20.37 -0.65 -1.56 16 22 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 23 H 0.05 2.54 6.76 -2.39 -0.02 2.52 16 24 H 0.06 2.29 5.88 -2.39 -0.01 2.27 16 25 H -0.01 -0.62 7.18 -2.39 -0.02 -0.63 16 26 H 0.03 1.59 7.36 -2.39 -0.02 1.58 16 27 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.04 1.42 7.62 -2.38 -0.02 1.41 16 29 H 0.10 3.27 6.43 -2.39 -0.02 3.25 16 30 H 0.42 2.87 9.06 -74.06 -0.67 2.20 16 31 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.86 291.66 0.20 -71.67 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 0.44 Total: 0.33 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.22 Total: -16.46 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.12 Total: -86.87 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.25 Total: -9.93 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.67 Total: -3.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.65 Total: -1.56 kcal Total: -71.86 0.20 -71.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238304057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.784 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds