Wall clock time and date at job start Tue Mar 31 2020 11:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 119.97674 * 2 1 4 4 C 1.38287 * 120.00225 * 180.02562 * 3 2 1 5 5 Br 1.89099 * 120.01687 * 179.97438 * 4 3 2 6 6 C 1.38465 * 119.96295 * 359.97438 * 4 3 2 7 7 Cl 1.73601 * 120.01322 * 180.02562 * 6 4 3 8 8 C 1.38305 * 119.96542 * 359.97438 * 6 4 3 9 9 C 1.38224 * 119.98436 * 179.97438 * 2 1 3 10 10 C 1.50693 * 119.98320 * 359.97438 * 9 2 1 11 11 N 1.46503 * 109.47298 * 80.00450 * 10 9 2 12 12 C 1.46505 * 119.99887 * 270.00216 * 11 10 9 13 13 C 1.36935 * 120.00049 * 89.99753 * 11 10 9 14 14 H 1.07992 * 120.00187 * 23.59673 * 13 11 10 15 15 C 1.38817 * 119.99597 * 203.60340 * 13 11 10 16 16 N 1.31615 * 120.00453 * 11.26855 * 15 13 11 17 17 Si 1.86805 * 119.99446 * 191.27096 * 15 13 11 18 18 H 1.48494 * 109.47015 * 89.99796 * 17 15 13 19 19 H 1.48505 * 109.46676 * 209.99735 * 17 15 13 20 20 H 1.48494 * 109.47025 * 329.99514 * 17 15 13 21 21 H 1.08995 * 109.47656 * 89.99961 * 1 2 3 22 22 H 1.09005 * 109.46695 * 209.99587 * 1 2 3 23 23 H 1.09001 * 109.47588 * 329.98937 * 1 2 3 24 24 H 1.08004 * 120.00478 * 359.73193 * 3 2 1 25 25 H 1.08002 * 120.00046 * 180.02562 * 8 6 4 26 26 H 1.08999 * 109.47065 * 200.00099 * 10 9 2 27 27 H 1.09004 * 109.47425 * 320.00647 * 10 9 2 28 28 H 1.08998 * 109.47136 * 94.51407 * 12 11 10 29 29 H 1.08999 * 109.47214 * 214.52057 * 12 11 10 30 30 H 1.09004 * 109.47141 * 334.51275 * 12 11 10 31 31 H 0.97000 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1976 0.0000 4 6 3.5806 1.1982 -0.0005 5 35 4.5259 2.8360 -0.0013 6 6 4.2727 -0.0011 -0.0005 7 17 6.0087 -0.0019 -0.0005 8 6 3.5802 -1.1983 0.0005 9 6 2.1978 -1.1972 0.0005 10 6 1.4436 -2.5019 0.0017 11 7 0.9911 -2.8056 -1.3582 12 6 -0.3168 -2.3319 -1.8179 13 6 1.7906 -3.5322 -2.1996 14 1 2.5427 -4.1924 -1.7936 15 6 1.6345 -3.4199 -3.5744 16 7 0.8822 -2.4632 -4.0754 17 14 2.4922 -4.6269 -4.7133 18 1 1.6053 -5.7926 -4.9576 19 1 2.7976 -3.9582 -6.0036 20 1 3.7553 -5.0890 -4.0841 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5140 24 1 1.6574 2.1327 -0.0044 25 1 4.1195 -2.1341 0.0010 26 1 2.0979 -3.2995 0.3535 27 1 0.5803 -2.4220 0.6625 28 1 -0.1964 -1.3833 -2.3410 29 1 -0.7524 -3.0672 -2.4944 30 1 -0.9750 -2.1928 -0.9602 31 1 0.7728 -2.3850 -5.0360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238577957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:18 Heat of formation + Delta-G solvation = 37.351174 kcal Electronic energy + Delta-G solvation = -16767.101275 eV Core-core repulsion = 13928.150570 eV Total energy + Delta-G solvation = -2838.950706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.36148 -36.44853 -35.53557 -32.83369 -31.89852 -31.06514 -29.25661 -27.30044 -25.70371 -25.24423 -22.22400 -21.57271 -19.88139 -16.89011 -16.31126 -15.69219 -14.94813 -14.69705 -14.17850 -13.51954 -13.36126 -13.19649 -13.08144 -12.54674 -12.35611 -11.94616 -11.34212 -11.16349 -11.08767 -11.03108 -10.93826 -10.64292 -10.62748 -10.43876 -10.24937 -10.02305 -9.92746 -9.88896 -8.64876 -8.42516 -8.07148 -6.88498 -5.84529 -3.29328 1.36292 1.55944 1.75726 2.42891 3.33159 3.39921 3.40963 3.85903 4.43197 4.97768 5.21008 5.36043 5.45378 5.52278 5.59758 5.67625 5.84834 5.99790 6.08706 6.21696 6.30315 6.39474 6.50465 6.58842 6.65795 7.03731 7.14244 7.26039 7.62685 7.71458 8.27292 9.10794 9.71746 10.20222 11.19479 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.005043 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.633772 B = 5550.742352 C = 6208.806329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.086 4.086 4 C -0.100 4.100 5 Br -0.055 7.055 6 C -0.016 4.016 7 Cl -0.069 7.069 8 C -0.091 4.091 9 C -0.052 4.052 10 C 0.176 3.824 11 N -0.585 5.585 12 C 0.159 3.841 13 C -0.257 4.257 14 H 0.071 0.929 15 C 0.007 3.993 16 N -0.900 5.900 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.278 1.278 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.003 0.997 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 8.761 10.321 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.106 4.106 4 C -0.180 4.180 5 Br 0.030 6.970 6 C -0.044 4.044 7 Cl -0.040 7.040 8 C -0.112 4.112 9 C -0.057 4.057 10 C 0.049 3.951 11 N -0.305 5.305 12 C 0.015 3.985 13 C -0.387 4.387 14 H 0.089 0.911 15 C -0.192 4.192 16 N -0.543 5.543 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.203 1.203 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.149 0.851 25 H 0.153 0.847 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.620 9.360 10.100 14.238 hybrid contribution 0.627 -0.727 -1.007 1.392 sum 4.248 8.632 9.093 13.238 Atomic orbital electron populations 1.21042 0.90677 1.02034 1.03546 1.19768 0.96567 0.91789 0.98638 1.20807 0.90974 0.98631 1.00201 1.21425 0.94611 0.89801 1.12200 1.96612 1.75816 1.26677 1.97868 1.20692 0.84306 0.93875 1.05562 1.98345 1.09890 1.98861 1.96880 1.20883 0.94007 0.95916 1.00395 1.21225 0.93028 0.98084 0.93405 1.20098 0.95854 0.90208 0.88955 1.44145 1.15757 1.60494 1.10065 1.21041 0.83869 0.99421 0.94218 1.19246 1.15939 1.16374 0.87123 0.91118 1.25102 0.99330 0.97533 0.97267 1.70041 1.41481 1.31201 1.11622 0.86235 0.79374 0.80462 0.80400 1.21309 1.21631 1.20308 0.89667 0.90892 0.92457 0.85135 0.84712 0.92435 0.92493 0.94774 0.93770 0.97879 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 8.13 36.01 0.29 -1.44 16 2 C -0.07 -1.12 5.88 -104.62 -0.62 -1.74 16 3 C -0.09 -1.39 9.44 -39.56 -0.37 -1.76 16 4 C -0.10 -1.66 6.23 -39.48 -0.25 -1.91 16 5 Br -0.05 -0.80 32.53 -68.01 -2.21 -3.01 16 6 C -0.02 -0.27 6.32 -39.47 -0.25 -0.52 16 7 Cl -0.07 -1.09 27.75 -51.86 -1.44 -2.53 16 8 C -0.09 -1.66 9.45 -39.55 -0.37 -2.03 16 9 C -0.05 -0.97 5.46 -104.63 -0.57 -1.54 16 10 C 0.18 3.33 5.37 -5.20 -0.03 3.30 16 11 N -0.58 -13.61 2.91 -182.50 -0.53 -14.14 16 12 C 0.16 3.58 7.23 59.85 0.43 4.01 16 13 C -0.26 -6.70 9.66 -15.06 -0.15 -6.85 16 14 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 15 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 16 N -0.90 -25.30 10.65 55.49 0.59 -24.71 16 17 Si 0.91 21.40 29.57 -169.99 -5.03 16.38 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H 0.08 1.41 6.11 -51.93 -0.32 1.10 16 22 H 0.07 1.04 5.22 -51.93 -0.27 0.77 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 25 H 0.14 2.35 8.04 -52.49 -0.42 1.93 16 26 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.06 0.95 6.13 -51.93 -0.32 0.63 16 28 H 0.03 0.84 6.13 -51.93 -0.32 0.52 16 29 H 0.04 1.10 7.29 -51.93 -0.38 0.72 16 30 H 0.00 0.05 6.49 -51.93 -0.34 -0.28 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -27.86 288.65 -9.39 -37.25 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.16 Total: -3.22 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.97 Total: -10.38 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.06 Total: -38.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.44 Total: -2.53 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.21 Total: -3.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.86 -9.39 -37.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238577957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.602 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds