Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 119.97674 * 2 1 4 4 C 1.38287 * 120.00225 * 180.02562 * 3 2 1 5 5 Br 1.89099 * 120.01687 * 179.97438 * 4 3 2 6 6 C 1.38465 * 119.96295 * 359.97438 * 4 3 2 7 7 Cl 1.73601 * 120.01322 * 180.02562 * 6 4 3 8 8 C 1.38305 * 119.96542 * 359.97438 * 6 4 3 9 9 C 1.38224 * 119.98436 * 179.97438 * 2 1 3 10 10 C 1.50693 * 119.98320 * 359.97438 * 9 2 1 11 11 N 1.46503 * 109.47298 * 80.00450 * 10 9 2 12 12 C 1.46505 * 119.99887 * 270.00216 * 11 10 9 13 13 C 1.36935 * 120.00049 * 89.99753 * 11 10 9 14 14 H 1.07992 * 120.00187 * 23.59673 * 13 11 10 15 15 C 1.38817 * 119.99597 * 203.60340 * 13 11 10 16 16 N 1.31615 * 120.00453 * 11.26855 * 15 13 11 17 17 Si 1.86805 * 119.99446 * 191.27096 * 15 13 11 18 18 H 1.48494 * 109.47015 * 89.99796 * 17 15 13 19 19 H 1.48505 * 109.46676 * 209.99735 * 17 15 13 20 20 H 1.48494 * 109.47025 * 329.99514 * 17 15 13 21 21 H 1.08995 * 109.47656 * 89.99961 * 1 2 3 22 22 H 1.09005 * 109.46695 * 209.99587 * 1 2 3 23 23 H 1.09001 * 109.47588 * 329.98937 * 1 2 3 24 24 H 1.08004 * 120.00478 * 359.73193 * 3 2 1 25 25 H 1.08002 * 120.00046 * 180.02562 * 8 6 4 26 26 H 1.08999 * 109.47065 * 200.00099 * 10 9 2 27 27 H 1.09004 * 109.47425 * 320.00647 * 10 9 2 28 28 H 1.08998 * 109.47136 * 94.51407 * 12 11 10 29 29 H 1.08999 * 109.47214 * 214.52057 * 12 11 10 30 30 H 1.09004 * 109.47141 * 334.51275 * 12 11 10 31 31 H 0.97000 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1976 0.0000 4 6 3.5806 1.1982 -0.0005 5 35 4.5259 2.8360 -0.0013 6 6 4.2727 -0.0011 -0.0005 7 17 6.0087 -0.0019 -0.0005 8 6 3.5802 -1.1983 0.0005 9 6 2.1978 -1.1972 0.0005 10 6 1.4436 -2.5019 0.0017 11 7 0.9911 -2.8056 -1.3582 12 6 -0.3168 -2.3319 -1.8179 13 6 1.7906 -3.5322 -2.1996 14 1 2.5427 -4.1924 -1.7936 15 6 1.6345 -3.4199 -3.5744 16 7 0.8822 -2.4632 -4.0754 17 14 2.4922 -4.6269 -4.7133 18 1 1.6053 -5.7926 -4.9576 19 1 2.7976 -3.9582 -6.0036 20 1 3.7553 -5.0890 -4.0841 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5140 24 1 1.6574 2.1327 -0.0044 25 1 4.1195 -2.1341 0.0010 26 1 2.0979 -3.2995 0.3535 27 1 0.5803 -2.4220 0.6625 28 1 -0.1964 -1.3833 -2.3410 29 1 -0.7524 -3.0672 -2.4944 30 1 -0.9750 -2.1928 -0.9602 31 1 0.7728 -2.3850 -5.0360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238577957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = 24.127543 kcal Electronic energy + Delta-G solvation = -16767.674695 eV Core-core repulsion = 13928.150570 eV Total energy + Delta-G solvation = -2839.524126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71488 -37.84947 -37.14246 -34.34748 -33.25830 -32.71540 -30.68967 -28.73576 -27.52465 -26.69430 -23.78702 -23.06291 -21.33429 -18.74071 -17.72248 -17.08526 -16.74432 -16.05073 -15.73313 -15.28103 -14.81887 -14.61965 -14.54388 -13.90401 -13.71448 -13.48996 -12.94446 -12.78234 -12.63993 -12.46322 -12.42603 -12.25790 -12.11307 -12.00637 -11.84748 -11.73440 -11.46978 -11.12863 -10.62459 -9.75657 -9.41590 -8.76212 -7.82765 -5.29763 0.01431 0.22031 0.47339 1.10875 1.45976 1.47243 1.54476 2.44077 2.57277 3.33233 3.68790 3.86299 3.93773 4.17320 4.19200 4.36849 4.52572 4.76133 4.79483 4.89190 4.93714 4.97131 5.02937 5.21117 5.26537 5.41076 5.65487 5.68802 5.77265 5.86271 6.33648 7.16535 7.86650 8.28907 9.19244 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.005043 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.633772 B = 5550.742352 C = 6208.806329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.087 4.087 4 C -0.105 4.105 5 Br -0.033 7.033 6 C -0.029 4.029 7 Cl -0.058 7.058 8 C -0.102 4.102 9 C -0.069 4.069 10 C 0.177 3.823 11 N -0.601 5.601 12 C 0.175 3.825 13 C -0.257 4.257 14 H 0.071 0.929 15 C -0.046 4.046 16 N -0.931 5.931 17 Si 0.958 3.042 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.270 1.270 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.156 0.844 25 H 0.135 0.865 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.040 0.960 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 9.571 11.659 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.106 4.106 4 C -0.185 4.185 5 Br 0.052 6.948 6 C -0.058 4.058 7 Cl -0.029 7.029 8 C -0.122 4.122 9 C -0.073 4.073 10 C 0.051 3.949 11 N -0.322 5.322 12 C 0.031 3.969 13 C -0.388 4.388 14 H 0.089 0.911 15 C -0.242 4.242 16 N -0.577 5.577 17 Si 0.787 3.213 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.195 1.195 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.173 0.827 25 H 0.152 0.848 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.853 10.176 11.487 15.823 hybrid contribution 0.636 -0.875 -1.251 1.653 sum 4.489 9.301 10.236 14.541 Atomic orbital electron populations 1.21033 0.89088 1.03954 1.02845 1.20088 0.97859 0.91624 0.97705 1.21129 0.90939 0.99407 0.99164 1.21719 0.95232 0.90627 1.10971 1.96631 1.75441 1.24923 1.97758 1.20799 0.85055 0.94031 1.05921 1.98343 1.08900 1.98851 1.96844 1.20993 0.94254 0.96395 1.00601 1.21176 0.93246 0.98277 0.94643 1.20174 0.97078 0.90686 0.86966 1.44219 1.15957 1.61137 1.10891 1.20785 0.84323 0.97048 0.94784 1.19502 1.15240 1.16389 0.87636 0.91096 1.25712 1.00695 0.99163 0.98635 1.70192 1.43557 1.32943 1.11022 0.85396 0.78757 0.78720 0.78396 1.21128 1.22668 1.19501 0.91449 0.90276 0.89344 0.82674 0.84757 0.92062 0.89847 0.97112 0.97057 0.94118 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 8.13 71.24 0.58 -2.48 16 2 C -0.07 -2.28 5.88 -19.87 -0.12 -2.39 16 3 C -0.09 -2.59 9.44 22.28 0.21 -2.38 16 4 C -0.10 -3.29 6.23 22.34 0.14 -3.16 16 5 Br -0.03 -0.88 32.53 -20.37 -0.66 -1.54 16 6 C -0.03 -0.98 6.32 22.34 0.14 -0.84 16 7 Cl -0.06 -1.77 27.75 -2.72 -0.08 -1.85 16 8 C -0.10 -3.61 9.45 22.29 0.21 -3.40 16 9 C -0.07 -2.46 5.46 -19.87 -0.11 -2.57 16 10 C 0.18 6.42 5.37 85.63 0.46 6.88 16 11 N -0.60 -27.64 2.91 -731.30 -2.12 -29.77 16 12 C 0.17 7.87 7.23 127.77 0.92 8.79 16 13 C -0.26 -13.41 9.66 84.04 0.81 -12.60 16 14 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 15 C -0.05 -2.52 5.13 84.86 0.44 -2.08 16 16 N -0.93 -53.51 10.65 21.65 0.23 -53.27 16 17 Si 0.96 44.52 29.57 68.60 2.03 46.55 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H 0.07 2.13 6.11 -2.39 -0.01 2.12 16 22 H 0.08 2.01 5.22 -2.38 -0.01 2.00 16 23 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 24 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 25 H 0.13 4.62 8.04 -2.91 -0.02 4.60 16 26 H 0.06 2.15 7.90 -2.39 -0.02 2.13 16 27 H 0.08 2.55 6.13 -2.39 -0.01 2.54 16 28 H 0.01 0.53 6.13 -2.39 -0.01 0.52 16 29 H 0.01 0.54 7.29 -2.39 -0.02 0.53 16 30 H 0.04 1.48 6.49 -2.38 -0.02 1.46 16 31 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -59.27 288.65 4.24 -55.04 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.15 Total: 1.08 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.69 Total: -16.23 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.89 Total: -83.04 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.66 Total: -1.54 kcal Total: -59.27 4.24 -55.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238577957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.164 kcal (2) G-P(sol) polarization free energy of solvation -59.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds