Wall clock time and date at job start Tue Mar 31 2020 11:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46911 * 270.00561 * 3 2 1 5 5 H 1.48497 * 109.47027 * 30.00380 * 3 2 1 6 6 H 1.48505 * 109.46953 * 150.00386 * 3 2 1 7 7 C 1.37875 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00169 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00075 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47329 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.94174 * 269.98125 * 10 9 7 12 12 C 1.38302 * 120.24801 * 179.97438 * 11 10 9 13 13 C 1.38041 * 120.12238 * 359.76360 * 12 11 10 14 14 C 1.39329 * 119.87225 * 0.50706 * 13 12 11 15 15 C 1.48369 * 120.11839 * 179.74381 * 14 13 12 16 16 C 1.39811 * 120.90058 * 359.72701 * 15 14 13 17 17 C 1.37935 * 119.04637 * 180.02562 * 16 15 14 18 18 N 1.31949 * 120.89744 * 0.02562 * 17 16 15 19 19 C 1.31982 * 121.99201 * 0.02562 * 18 17 16 20 20 Br 1.89090 * 119.57634 * 180.02562 * 19 18 17 21 21 C 1.38132 * 120.85155 * 359.97438 * 19 18 17 22 22 C 1.38003 * 119.94123 * 89.99836 * 10 9 7 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47161 * 60.00219 * 9 7 2 25 25 H 1.08999 * 109.47303 * 299.99705 * 9 7 2 26 26 H 1.07996 * 119.87260 * 0.02562 * 11 10 9 27 27 H 1.07998 * 119.93895 * 180.02562 * 12 11 10 28 28 H 1.07999 * 120.06026 * 180.27733 * 13 12 11 29 29 H 1.07994 * 120.47923 * 0.02562 * 16 15 14 30 30 H 1.08009 * 119.55232 * 179.72427 * 17 16 15 31 31 H 1.08005 * 120.49376 * 180.02562 * 21 19 18 32 32 H 1.07999 * 120.05431 * 359.96190 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0023 11 6 4.2449 -3.2665 1.1960 12 6 4.7055 -4.5706 1.2024 13 6 4.9326 -5.2309 0.0116 14 6 4.7070 -4.5775 -1.1982 15 6 4.9547 -5.2801 -2.4813 16 6 5.4207 -6.5981 -2.4998 17 6 5.6385 -7.2144 -3.7144 18 7 5.4136 -6.5770 -4.8476 19 6 4.9747 -5.3326 -4.8747 20 35 4.6747 -4.4847 -6.5380 21 6 4.7306 -4.6419 -3.7036 22 6 4.2430 -3.2634 -1.1986 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 4.0642 -2.7552 2.1300 27 1 4.8837 -5.0747 2.1407 28 1 5.2879 -6.2507 0.0177 29 1 5.6074 -7.1262 -1.5764 30 1 6.0027 -8.2310 -3.7383 31 1 4.3712 -3.6238 -3.7325 32 1 4.0620 -2.7538 -2.1335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241710335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:34 Heat of formation + Delta-G solvation = 52.542787 kcal Electronic energy + Delta-G solvation = -17092.402368 eV Core-core repulsion = 14256.543269 eV Total energy + Delta-G solvation = -2835.859099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.45711 -38.70572 -34.24657 -33.07364 -32.58586 -31.51580 -29.86844 -29.56731 -27.69163 -24.22768 -23.84462 -22.62194 -21.37958 -19.96806 -17.32252 -16.85738 -16.53429 -16.07356 -15.44508 -14.52610 -14.49470 -14.44139 -14.12785 -13.87123 -12.99972 -12.97286 -12.63200 -12.31540 -12.01067 -11.66407 -11.31327 -11.10697 -10.90313 -10.56133 -10.52216 -10.38771 -10.06784 -10.00488 -9.75594 -9.46571 -9.10172 -8.65718 -8.30362 -7.98712 -6.14601 -4.14961 0.55707 0.80106 1.25484 1.82955 2.05444 3.23438 3.31859 3.33173 3.52585 4.24811 4.27984 4.34708 4.44699 4.79737 4.82990 4.91961 5.15880 5.21986 5.34218 5.47927 5.53108 5.70492 5.76386 5.83441 6.11120 6.24350 6.36493 6.41789 6.75327 6.77818 6.87002 6.89935 7.35658 7.39792 7.55238 7.60426 8.40417 8.89731 9.44988 10.98138 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.004108 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.330480 B = 6814.642035 C = 8540.827320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.029 4.029 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.074 4.074 15 C 0.029 3.971 16 C -0.160 4.160 17 C 0.109 3.891 18 N -0.473 5.473 19 C 0.127 3.873 20 Br -0.011 7.011 21 C -0.135 4.135 22 C -0.096 4.096 23 H 0.265 0.735 24 H 0.030 0.970 25 H 0.025 0.975 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.937 -12.328 -7.507 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.029 4.029 11 C -0.122 4.122 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.074 4.074 15 C 0.020 3.980 16 C -0.180 4.180 17 C -0.049 4.049 18 N -0.184 5.184 19 C -0.088 4.088 20 Br 0.073 6.927 21 C -0.157 4.157 22 C -0.114 4.114 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.810 -12.324 -8.944 19.899 hybrid contribution 0.112 1.072 1.142 1.570 sum 12.922 -11.252 -7.802 18.827 Atomic orbital electron populations 1.69895 1.06277 1.27097 1.50247 1.24989 0.94729 0.99021 0.94339 0.86822 0.80388 0.83677 0.78747 1.20056 1.21161 1.18917 1.20895 0.88068 0.94736 1.51804 0.90791 1.18841 0.97634 0.88293 0.97622 1.20265 0.92575 0.98210 0.91845 1.21261 0.97981 0.94482 0.98465 1.20999 1.00558 0.95120 0.97410 1.20948 1.01999 0.99267 0.91689 1.18490 1.03687 0.94466 0.90758 1.19257 0.93062 0.93007 0.92653 1.22333 1.00580 0.94976 1.00119 1.22664 0.95778 0.99697 0.86729 1.67375 1.12007 1.07825 1.31186 1.22610 1.01245 0.92958 0.92022 1.96785 1.94783 1.76362 1.24760 1.22168 1.00679 1.02096 0.90734 1.21157 0.98313 0.93163 0.98776 0.92490 0.95153 0.95690 0.85861 0.86258 0.86438 0.83851 0.81872 0.83182 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.15 9.65 -34.44 -0.33 -14.48 16 8 H 0.07 2.23 7.98 -52.48 -0.42 1.81 16 9 C 0.01 0.30 4.17 -29.04 -0.12 0.18 16 10 C -0.03 -0.57 5.07 -104.67 -0.53 -1.10 16 11 C -0.10 -1.79 9.69 -39.52 -0.38 -2.17 16 12 C -0.12 -1.76 10.03 -39.63 -0.40 -2.16 16 13 C -0.12 -1.65 9.45 -39.25 -0.37 -2.03 16 14 C -0.07 -1.13 5.88 -104.90 -0.62 -1.75 16 15 C 0.03 0.40 5.91 -104.59 -0.62 -0.22 16 16 C -0.16 -1.77 9.50 -39.10 -0.37 -2.14 16 17 C 0.11 1.19 11.17 -17.61 -0.20 0.99 16 18 N -0.47 -6.36 10.31 -11.73 -0.12 -6.48 16 19 C 0.13 1.76 7.16 -17.53 -0.13 1.64 16 20 Br -0.01 -0.14 33.86 -68.01 -2.30 -2.44 16 21 C -0.13 -1.89 9.22 -39.07 -0.36 -2.25 16 22 C -0.10 -1.70 9.10 -39.25 -0.36 -2.06 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 25 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 26 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 29 H 0.14 1.19 6.34 -52.49 -0.33 0.86 16 30 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.15 2.05 6.34 -52.48 -0.33 1.71 16 32 H 0.12 2.12 6.30 -52.49 -0.33 1.79 16 LS Contribution 298.22 15.07 4.49 4.49 Total: -1.00 -30.46 298.22 -9.65 -40.10 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -2.94 Total: 0.01 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -4.88 Total: -25.64 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.65 Total: -32.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.30 Total: -2.44 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.46 -9.65 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241710335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.645 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds