Wall clock time and date at job start Tue Mar 31 2020 11:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47234 * 240.00101 * 3 2 1 5 5 H 1.48501 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47198 * 120.00255 * 3 2 1 7 7 C 1.37884 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.38322 * 119.87892 * 90.00039 * 10 9 7 12 12 C 1.38016 * 120.11965 * 180.27893 * 11 10 9 13 13 C 1.39347 * 119.87481 * 359.46535 * 12 11 10 14 14 C 1.48383 * 120.11981 * 180.23026 * 13 12 11 15 15 C 1.39300 * 120.54243 * 129.99761 * 14 13 12 16 16 N 1.31742 * 120.60171 * 179.70351 * 15 14 13 17 17 C 1.31930 * 121.87826 * 0.59261 * 16 15 14 18 18 C 1.38219 * 121.04296 * 359.70032 * 17 16 15 19 19 C 1.38578 * 119.26917 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 120.85269 * 179.97438 * 19 18 17 21 21 C 1.39334 * 119.76142 * 0.50855 * 13 12 11 22 22 C 1.38030 * 119.87334 * 359.74856 * 21 13 12 23 23 H 0.97006 * 119.99818 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47082 * 60.00005 * 9 7 2 25 25 H 1.09001 * 109.46782 * 300.00196 * 9 7 2 26 26 H 1.08002 * 119.93718 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.06281 * 179.70398 * 12 11 10 28 28 H 1.08001 * 119.69949 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.48045 * 179.72335 * 17 16 15 30 30 H 1.08001 * 120.36405 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.06636 * 179.76641 * 21 13 12 32 32 H 1.07997 * 119.93246 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6780 -4.1684 1.1988 12 6 3.5793 -5.2137 1.2046 13 6 4.0295 -5.7486 -0.0007 14 6 4.9945 -6.8758 -0.0008 15 6 4.7539 -8.0137 -0.7674 16 7 5.6127 -9.0127 -0.7729 17 6 6.7181 -8.9851 -0.0533 18 6 7.0263 -7.8947 0.7383 19 6 6.1577 -6.8155 0.7729 20 35 6.5348 -5.3011 1.8407 21 6 3.5748 -5.2175 -1.2059 22 6 2.6775 -4.1686 -1.1999 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.3255 -3.7554 2.1324 27 1 3.9319 -5.6187 2.1416 28 1 3.8576 -8.0753 -1.3669 29 1 7.3931 -9.8277 -0.0834 30 1 7.9345 -7.8836 1.3227 31 1 3.9234 -5.6258 -2.1429 32 1 2.3248 -3.7559 -2.1335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243061618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:59 Heat of formation + Delta-G solvation = 51.002656 kcal Electronic energy + Delta-G solvation = -17142.646936 eV Core-core repulsion = 14306.721053 eV Total energy + Delta-G solvation = -2835.925884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44601 -38.52517 -34.28208 -33.23949 -32.31645 -30.45980 -30.38958 -29.87095 -26.91247 -24.12881 -23.53408 -22.35891 -21.84208 -20.20048 -17.30533 -16.64035 -16.41166 -16.24383 -15.09061 -14.74649 -14.38978 -14.26825 -13.97862 -13.26606 -13.11065 -12.95315 -12.62987 -12.29996 -11.74169 -11.55384 -11.36725 -11.33060 -10.81578 -10.62254 -10.41912 -10.15741 -9.80675 -9.68307 -9.50902 -9.46471 -9.23052 -8.46182 -8.35760 -7.72316 -6.08320 -4.12524 0.65587 0.80628 1.38339 1.97530 1.99268 3.29644 3.33897 3.37084 3.50088 4.18272 4.27906 4.45149 4.51831 4.58024 4.80633 5.14059 5.26011 5.35165 5.42413 5.46094 5.51059 5.70063 5.90242 6.10358 6.12271 6.32086 6.53346 6.57814 6.92106 7.07363 7.09901 7.43483 7.60054 7.69089 7.77140 7.87207 8.26082 8.92453 9.51563 11.01477 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021747 B = 0.004010 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.217307 B = 6980.603726 C = 7858.566309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.045 3.955 10 C -0.015 4.015 11 C -0.125 4.125 12 C -0.087 4.087 13 C -0.105 4.105 14 C -0.043 4.043 15 C 0.112 3.888 16 N -0.472 5.472 17 C 0.092 3.908 18 C -0.143 4.143 19 C -0.051 4.051 20 Br -0.021 7.021 21 C -0.094 4.094 22 C -0.127 4.127 23 H 0.263 0.737 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.599 -16.085 2.396 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.008 3.992 10 C -0.015 4.015 11 C -0.143 4.143 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.046 4.046 15 C -0.046 4.046 16 N -0.180 5.180 17 C -0.065 4.065 18 C -0.165 4.165 19 C -0.139 4.139 20 Br 0.066 6.934 21 C -0.112 4.112 22 C -0.145 4.145 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.183 0.817 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.132 0.868 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.425 -16.132 2.288 21.112 hybrid contribution 0.663 1.412 0.335 1.596 sum 14.087 -14.720 2.623 20.543 Atomic orbital electron populations 1.69943 1.06033 1.27007 1.50240 1.24999 0.94877 0.99241 0.95084 0.86599 0.79555 0.82783 0.78782 1.20116 1.21186 1.20154 1.20994 0.93027 0.89747 1.51383 0.92462 1.18415 0.92612 0.89613 0.98577 1.20844 0.94777 0.93987 0.91880 1.21002 0.98261 0.96500 0.98578 1.21090 0.96751 0.96388 0.96295 1.18226 1.00448 0.97458 0.94449 1.19858 0.93260 0.95873 0.95654 1.23039 0.98035 0.87500 0.96022 1.67635 1.03007 1.28231 1.19160 1.22782 0.94206 0.97174 0.92383 1.22081 1.00208 0.93364 1.00871 1.22502 0.97044 0.94953 0.99375 1.96815 1.94199 1.36492 1.65923 1.20995 0.97280 0.96950 0.95959 1.21019 0.98349 0.96568 0.98597 0.92724 0.95127 0.95152 0.86036 0.86788 0.81696 0.82088 0.83882 0.86806 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.10 9.09 -34.44 -0.31 -14.42 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.11 5.10 -29.04 -0.15 0.97 16 10 C -0.01 -0.31 5.07 -104.56 -0.53 -0.84 16 11 C -0.13 -2.36 9.68 -39.63 -0.38 -2.74 16 12 C -0.09 -1.42 8.02 -39.25 -0.31 -1.74 16 13 C -0.10 -1.62 5.11 -104.90 -0.54 -2.16 16 14 C -0.04 -0.57 5.49 -104.73 -0.57 -1.15 16 15 C 0.11 1.38 10.70 -17.20 -0.18 1.20 16 16 N -0.47 -5.66 10.35 -12.99 -0.13 -5.79 16 17 C 0.09 0.90 11.17 -17.52 -0.20 0.70 16 18 C -0.14 -1.43 9.89 -39.46 -0.39 -1.82 16 19 C -0.05 -0.64 6.24 -38.86 -0.24 -0.88 16 20 Br -0.02 -0.26 30.49 -68.01 -2.07 -2.34 16 21 C -0.09 -1.49 9.54 -39.25 -0.37 -1.86 16 22 C -0.13 -2.36 9.68 -39.63 -0.38 -2.74 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 25 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.11 1.69 6.98 -52.49 -0.37 1.32 16 28 H 0.17 1.76 8.05 -52.49 -0.42 1.34 16 29 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.11 1.52 8.05 -52.49 -0.42 1.10 16 32 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -29.64 302.75 -9.88 -39.52 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.28 Total: -1.07 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -4.67 Total: -25.92 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.60 Total: -31.06 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.07 Total: -2.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.64 -9.88 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243061618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.524 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds