Wall clock time and date at job start Tue Mar 31 2020 11:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47234 * 240.00101 * 3 2 1 5 5 H 1.48501 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47198 * 120.00255 * 3 2 1 7 7 C 1.37884 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.38322 * 119.87892 * 90.00039 * 10 9 7 12 12 C 1.38016 * 120.11965 * 180.27893 * 11 10 9 13 13 C 1.39347 * 119.87481 * 359.46535 * 12 11 10 14 14 C 1.48383 * 120.11981 * 180.23026 * 13 12 11 15 15 C 1.39300 * 120.54243 * 129.99761 * 14 13 12 16 16 N 1.31742 * 120.60171 * 179.70351 * 15 14 13 17 17 C 1.31930 * 121.87826 * 0.59261 * 16 15 14 18 18 C 1.38219 * 121.04296 * 359.70032 * 17 16 15 19 19 C 1.38578 * 119.26917 * 359.97438 * 18 17 16 20 20 Br 1.89101 * 120.85269 * 179.97438 * 19 18 17 21 21 C 1.39334 * 119.76142 * 0.50855 * 13 12 11 22 22 C 1.38030 * 119.87334 * 359.74856 * 21 13 12 23 23 H 0.97006 * 119.99818 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47082 * 60.00005 * 9 7 2 25 25 H 1.09001 * 109.46782 * 300.00196 * 9 7 2 26 26 H 1.08002 * 119.93718 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.06281 * 179.70398 * 12 11 10 28 28 H 1.08001 * 119.69949 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.48045 * 179.72335 * 17 16 15 30 30 H 1.08001 * 120.36405 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.06636 * 179.76641 * 21 13 12 32 32 H 1.07997 * 119.93246 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6780 -4.1684 1.1988 12 6 3.5793 -5.2137 1.2046 13 6 4.0295 -5.7486 -0.0007 14 6 4.9945 -6.8758 -0.0008 15 6 4.7539 -8.0137 -0.7674 16 7 5.6127 -9.0127 -0.7729 17 6 6.7181 -8.9851 -0.0533 18 6 7.0263 -7.8947 0.7383 19 6 6.1577 -6.8155 0.7729 20 35 6.5348 -5.3011 1.8407 21 6 3.5748 -5.2175 -1.2059 22 6 2.6775 -4.1686 -1.1999 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.3255 -3.7554 2.1324 27 1 3.9319 -5.6187 2.1416 28 1 3.8576 -8.0753 -1.3669 29 1 7.3931 -9.8277 -0.0834 30 1 7.9345 -7.8836 1.3227 31 1 3.9234 -5.6258 -2.1429 32 1 2.3248 -3.7559 -2.1335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243061618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:58 Heat of formation + Delta-G solvation = 36.235719 kcal Electronic energy + Delta-G solvation = -17143.287279 eV Core-core repulsion = 14306.721053 eV Total energy + Delta-G solvation = -2836.566226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39888 -39.86051 -35.80810 -34.63023 -33.64964 -31.81046 -31.65987 -31.00399 -28.55329 -25.66039 -24.54507 -23.75242 -23.13579 -21.63857 -18.53045 -18.25522 -17.56149 -17.34335 -16.75679 -16.05243 -15.95371 -15.33514 -15.01574 -14.54133 -14.34840 -14.30849 -14.13404 -13.70346 -13.30603 -13.11035 -12.91491 -12.60172 -12.53490 -12.37851 -11.92550 -11.61672 -11.46602 -11.16563 -10.66181 -10.60768 -10.39321 -10.31725 -9.73239 -9.13347 -8.20754 -6.34066 -0.32758 -0.04951 0.44010 0.58768 0.67416 1.39205 1.41262 1.49655 2.38541 2.61895 2.95760 3.10045 3.32974 3.58788 3.69706 3.91752 4.10351 4.13382 4.27054 4.36028 4.55294 4.63403 4.68482 4.74116 4.89276 5.07830 5.11743 5.34363 5.38073 5.48147 5.57498 5.61340 5.74285 6.05787 6.07539 6.21573 6.78329 6.83860 7.34417 8.88107 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021747 B = 0.004010 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.217307 B = 6980.603726 C = 7858.566309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.048 4.048 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.086 4.086 14 C -0.067 4.067 15 C 0.114 3.886 16 N -0.488 5.488 17 C 0.103 3.897 18 C -0.137 4.137 19 C -0.058 4.058 20 Br -0.031 7.031 21 C -0.087 4.087 22 C -0.134 4.134 23 H 0.266 0.734 24 H 0.007 0.993 25 H 0.004 0.996 26 H 0.115 0.885 27 H 0.131 0.869 28 H 0.176 0.824 29 H 0.200 0.800 30 H 0.172 0.828 31 H 0.144 0.856 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.425 -17.813 2.229 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.048 4.048 11 C -0.152 4.152 12 C -0.101 4.101 13 C -0.087 4.087 14 C -0.071 4.071 15 C -0.044 4.044 16 N -0.196 5.196 17 C -0.054 4.054 18 C -0.158 4.158 19 C -0.146 4.146 20 Br 0.055 6.945 21 C -0.105 4.105 22 C -0.152 4.152 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.193 0.807 29 H 0.217 0.783 30 H 0.190 0.810 31 H 0.162 0.838 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.252 -17.870 2.119 24.248 hybrid contribution -0.101 1.744 0.396 1.792 sum 16.151 -16.126 2.515 22.962 Atomic orbital electron populations 1.70066 1.07607 1.28014 1.51189 1.25885 0.95729 1.02959 0.94579 0.85545 0.78361 0.78312 0.79137 1.19254 1.20498 1.19410 1.21327 0.93044 0.91198 1.51105 0.92803 1.18142 0.92958 0.91118 0.96071 1.20502 0.96104 0.94395 0.93831 1.20965 0.99128 0.97514 0.97592 1.21195 0.95805 0.95488 0.97628 1.18447 0.99388 0.97108 0.93744 1.19714 0.93695 0.95847 0.97863 1.23177 0.98538 0.87108 0.95578 1.67729 1.03817 1.28054 1.20024 1.23464 0.93576 0.97865 0.90470 1.22426 1.00518 0.92255 1.00594 1.22651 0.97408 0.95384 0.99144 1.96824 1.94165 1.37322 1.66190 1.21227 0.96053 0.95643 0.97582 1.21037 0.99127 0.97499 0.97577 0.92538 0.97513 0.97729 0.86684 0.85150 0.80695 0.78338 0.81050 0.83804 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -30.14 9.09 25.60 0.23 -29.91 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.05 2.87 5.10 29.10 0.15 3.02 16 10 C -0.05 -2.10 5.07 -19.83 -0.10 -2.20 16 11 C -0.13 -5.18 9.68 22.24 0.22 -4.97 16 12 C -0.08 -2.66 8.02 22.48 0.18 -2.48 16 13 C -0.09 -2.53 5.11 -20.04 -0.10 -2.63 16 14 C -0.07 -1.64 5.49 -19.93 -0.11 -1.75 16 15 C 0.11 2.47 10.70 84.96 0.91 3.38 16 16 N -0.49 -9.96 10.35 -195.00 -2.02 -11.98 16 17 C 0.10 1.56 11.17 84.67 0.95 2.51 16 18 C -0.14 -2.17 9.89 22.35 0.22 -1.95 16 19 C -0.06 -1.29 6.24 22.74 0.14 -1.14 16 20 Br -0.03 -0.74 30.49 -20.37 -0.62 -1.36 16 21 C -0.09 -2.66 9.54 22.48 0.21 -2.44 16 22 C -0.13 -5.06 9.68 22.24 0.22 -4.85 16 23 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 24 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 25 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 26 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.13 3.72 6.98 -2.91 -0.02 3.69 16 28 H 0.18 3.29 8.05 -2.91 -0.02 3.26 16 29 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.14 3.49 8.05 -2.91 -0.02 3.47 16 32 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -65.54 302.75 4.37 -61.17 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.13 Total: 5.99 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 3.57 Total: -44.57 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.73 Total: -67.51 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.62 Total: -1.36 kcal Total: -65.54 4.37 -61.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243061618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.405 kcal (2) G-P(sol) polarization free energy of solvation -65.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds