Wall clock time and date at job start Tue Mar 31 2020 11:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48508 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47147 * 299.99815 * 3 2 1 6 6 H 1.48495 * 109.47153 * 60.00348 * 3 2 1 7 7 C 1.37879 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.38341 * 119.94175 * 89.99937 * 10 9 7 12 12 C 1.38299 * 120.24712 * 179.97438 * 11 10 9 13 13 C 1.38038 * 120.11987 * 359.97438 * 12 11 10 14 14 C 1.39321 * 119.87765 * 0.02562 * 13 12 11 15 15 C 1.48380 * 120.12016 * 180.02562 * 14 13 12 16 16 C 1.39302 * 120.54482 * 129.99419 * 15 14 13 17 17 N 1.31736 * 120.60317 * 179.72132 * 16 15 14 18 18 C 1.31931 * 121.87982 * 0.25828 * 17 16 15 19 19 C 1.38222 * 121.04294 * 0.02665 * 18 17 16 20 20 C 1.38572 * 119.26821 * 359.97091 * 19 18 17 21 21 Br 1.89101 * 120.85362 * 180.02562 * 20 19 18 22 22 C 1.38002 * 119.93881 * 270.25623 * 10 9 7 23 23 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47527 * 60.00209 * 9 7 2 25 25 H 1.09003 * 109.47453 * 300.00073 * 9 7 2 26 26 H 1.08004 * 119.87521 * 359.95330 * 11 10 9 27 27 H 1.08000 * 119.93842 * 179.97438 * 12 11 10 28 28 H 1.07996 * 120.06235 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.69948 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.47669 * 179.97438 * 18 17 16 31 31 H 1.07993 * 120.36024 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.06028 * 0.04174 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6789 -4.1695 1.1982 12 6 3.5771 -5.2211 1.2056 13 6 4.0305 -5.7531 0.0153 14 6 3.5820 -5.2285 -1.1949 15 6 4.0654 -5.7967 -2.4775 16 6 3.1640 -6.1572 -3.4765 17 7 3.5922 -6.6566 -4.6179 18 6 4.8761 -6.8398 -4.8602 19 6 5.8331 -6.5129 -3.9180 20 6 5.4330 -5.9840 -2.7013 21 35 6.7042 -5.5202 -1.3803 22 6 2.6818 -4.1647 -1.1964 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.3266 -3.7562 2.1319 27 1 3.9244 -5.6267 2.1444 28 1 4.7322 -6.5740 0.0222 29 1 2.1047 -6.0214 -3.3158 30 1 5.1841 -7.2526 -5.8095 31 1 6.8811 -6.6671 -4.1282 32 1 2.3346 -3.7510 -2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243062122.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:46 Heat of formation + Delta-G solvation = 51.261101 kcal Electronic energy + Delta-G solvation = -17296.192882 eV Core-core repulsion = 14460.278206 eV Total energy + Delta-G solvation = -2835.914677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39656 -38.51136 -34.14111 -33.22290 -32.39184 -31.16756 -30.24358 -28.93950 -27.08881 -24.00911 -23.62571 -22.97430 -21.37812 -20.03522 -17.14314 -16.59285 -16.39031 -16.08092 -15.46768 -14.71705 -14.57483 -14.06251 -13.93615 -13.26997 -13.20709 -12.67625 -12.52378 -12.26056 -11.88908 -11.56942 -11.35022 -11.05592 -10.88838 -10.61346 -10.43678 -10.21536 -9.80883 -9.61330 -9.46814 -9.42677 -9.26751 -8.45983 -8.17520 -7.80759 -6.07682 -4.11459 0.69572 0.86748 1.39208 1.94068 2.05343 3.27504 3.35416 3.40501 3.56200 4.23809 4.29101 4.46302 4.57003 4.62245 4.85193 5.18233 5.27230 5.38479 5.48338 5.50875 5.56731 5.74264 5.87462 6.00752 6.19788 6.37220 6.48837 6.65958 6.93359 7.05494 7.10176 7.44679 7.60799 7.75436 7.77554 7.88432 8.27648 8.94109 9.52877 11.02260 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.004331 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.127340 B = 6463.290625 C = 6774.808853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.035 4.035 11 C -0.109 4.109 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.075 4.075 15 C -0.047 4.047 16 C 0.118 3.882 17 N -0.471 5.471 18 C 0.094 3.906 19 C -0.145 4.145 20 C -0.047 4.047 21 Br -0.025 7.025 22 C -0.095 4.095 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 -15.236 -4.814 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.035 4.035 11 C -0.127 4.127 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.076 4.076 15 C -0.051 4.051 16 C -0.041 4.041 17 N -0.179 5.179 18 C -0.063 4.063 19 C -0.167 4.167 20 C -0.135 4.135 21 Br 0.062 6.938 22 C -0.113 4.113 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.185 0.815 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.462 -15.172 -4.974 20.254 hybrid contribution 0.896 1.153 0.349 1.502 sum 13.358 -14.019 -4.625 19.909 Atomic orbital electron populations 1.69960 1.06026 1.26758 1.50489 1.24997 0.94862 0.99242 0.95124 0.86506 0.80198 0.83534 0.77675 1.19649 1.20905 1.20889 1.21089 0.93091 0.89817 1.51015 0.92405 1.18374 0.92514 0.89537 0.98514 1.20621 0.96188 0.95130 0.91580 1.21224 0.97224 0.95765 0.98468 1.20927 0.98527 0.97580 0.97130 1.20914 1.00194 1.00691 0.91637 1.18403 1.00452 0.98397 0.90348 1.19878 0.91654 0.97613 0.95997 1.23087 1.00405 0.93295 0.87289 1.67651 1.17574 1.11727 1.20983 1.22803 0.87886 0.96650 0.98973 1.22062 1.02019 0.99836 0.92767 1.22430 0.93463 1.02279 0.95313 1.96764 1.53149 1.91869 1.52062 1.21061 0.96522 0.94986 0.98776 0.92858 0.95234 0.95159 0.86187 0.86682 0.86882 0.81484 0.82045 0.83878 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 10 C -0.04 -0.73 5.07 -104.67 -0.53 -1.26 16 11 C -0.11 -2.02 9.69 -39.52 -0.38 -2.41 16 12 C -0.12 -1.96 10.03 -39.63 -0.40 -2.36 16 13 C -0.12 -1.80 8.02 -39.25 -0.31 -2.11 16 14 C -0.08 -1.23 5.11 -104.90 -0.54 -1.77 16 15 C -0.05 -0.69 5.49 -104.73 -0.57 -1.27 16 16 C 0.12 1.61 10.70 -17.20 -0.18 1.43 16 17 N -0.47 -6.21 10.35 -12.99 -0.13 -6.34 16 18 C 0.09 1.00 11.17 -17.51 -0.20 0.81 16 19 C -0.15 -1.55 9.89 -39.46 -0.39 -1.94 16 20 C -0.05 -0.62 6.24 -38.86 -0.24 -0.86 16 21 Br -0.02 -0.31 30.49 -68.01 -2.07 -2.39 16 22 C -0.10 -1.80 9.19 -39.25 -0.36 -2.16 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 25 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.56 6.98 -52.49 -0.37 1.19 16 29 H 0.17 2.10 8.05 -52.49 -0.42 1.68 16 30 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 2.24 8.05 -52.49 -0.42 1.82 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -29.88 302.76 -9.88 -39.76 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -3.28 Total: -0.94 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -4.67 Total: -25.72 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.60 Total: -31.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.07 Total: -2.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.88 -9.88 -39.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243062122.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.022 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds