Wall clock time and date at job start Tue Mar 31 2020 11:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48508 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47147 * 299.99815 * 3 2 1 6 6 H 1.48495 * 109.47153 * 60.00348 * 3 2 1 7 7 C 1.37879 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.38341 * 119.94175 * 89.99937 * 10 9 7 12 12 C 1.38299 * 120.24712 * 179.97438 * 11 10 9 13 13 C 1.38038 * 120.11987 * 359.97438 * 12 11 10 14 14 C 1.39321 * 119.87765 * 0.02562 * 13 12 11 15 15 C 1.48380 * 120.12016 * 180.02562 * 14 13 12 16 16 C 1.39302 * 120.54482 * 129.99419 * 15 14 13 17 17 N 1.31736 * 120.60317 * 179.72132 * 16 15 14 18 18 C 1.31931 * 121.87982 * 0.25828 * 17 16 15 19 19 C 1.38222 * 121.04294 * 0.02665 * 18 17 16 20 20 C 1.38572 * 119.26821 * 359.97091 * 19 18 17 21 21 Br 1.89101 * 120.85362 * 180.02562 * 20 19 18 22 22 C 1.38002 * 119.93881 * 270.25623 * 10 9 7 23 23 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47527 * 60.00209 * 9 7 2 25 25 H 1.09003 * 109.47453 * 300.00073 * 9 7 2 26 26 H 1.08004 * 119.87521 * 359.95330 * 11 10 9 27 27 H 1.08000 * 119.93842 * 179.97438 * 12 11 10 28 28 H 1.07996 * 120.06235 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.69948 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.47669 * 179.97438 * 18 17 16 31 31 H 1.07993 * 120.36024 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.06028 * 0.04174 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6789 -4.1695 1.1982 12 6 3.5771 -5.2211 1.2056 13 6 4.0305 -5.7531 0.0153 14 6 3.5820 -5.2285 -1.1949 15 6 4.0654 -5.7967 -2.4775 16 6 3.1640 -6.1572 -3.4765 17 7 3.5922 -6.6566 -4.6179 18 6 4.8761 -6.8398 -4.8602 19 6 5.8331 -6.5129 -3.9180 20 6 5.4330 -5.9840 -2.7013 21 35 6.7042 -5.5202 -1.3803 22 6 2.6818 -4.1647 -1.1964 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.3266 -3.7562 2.1319 27 1 3.9244 -5.6267 2.1444 28 1 4.7322 -6.5740 0.0222 29 1 2.1047 -6.0214 -3.3158 30 1 5.1841 -7.2526 -5.8095 31 1 6.8811 -6.6671 -4.1282 32 1 2.3346 -3.7510 -2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243062122.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:45 Heat of formation + Delta-G solvation = 36.216527 kcal Electronic energy + Delta-G solvation = -17296.845264 eV Core-core repulsion = 14460.278206 eV Total energy + Delta-G solvation = -2836.567058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42251 -39.85559 -35.72019 -34.69484 -33.54454 -32.82599 -31.22946 -30.15417 -28.91953 -25.35983 -25.09468 -24.19052 -22.68404 -21.47848 -18.54314 -18.14021 -17.59504 -17.36220 -16.73862 -16.41216 -16.04661 -15.18511 -15.02961 -14.56037 -14.45872 -14.20543 -14.11920 -13.55042 -13.33376 -13.18341 -12.84399 -12.66163 -12.50423 -12.35082 -12.01576 -11.61309 -11.48016 -11.14546 -10.70231 -10.62062 -10.44183 -10.34813 -9.55705 -9.22808 -8.21764 -6.34450 -0.35074 -0.07707 0.39965 0.61787 0.66132 1.37543 1.38540 1.51531 2.38066 2.59375 2.95845 3.09436 3.30334 3.56004 3.67504 3.90880 4.12394 4.16229 4.26593 4.36629 4.54970 4.59816 4.65380 4.74171 4.87709 5.01882 5.19238 5.34381 5.36388 5.47835 5.58062 5.62738 5.74539 6.04265 6.08763 6.22223 6.78315 6.81606 7.34225 8.87836 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.004331 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.127340 B = 6463.290625 C = 6774.808853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.057 3.943 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.108 4.108 14 C -0.063 4.063 15 C -0.073 4.073 16 C 0.109 3.891 17 N -0.490 5.490 18 C 0.103 3.897 19 C -0.135 4.135 20 C -0.055 4.055 21 Br -0.023 7.023 22 C -0.109 4.109 23 H 0.266 0.734 24 H 0.003 0.997 25 H 0.007 0.993 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.165 0.835 30 H 0.202 0.798 31 H 0.177 0.823 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.538 -16.470 -5.505 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.141 4.141 12 C -0.129 4.129 13 C -0.126 4.126 14 C -0.064 4.064 15 C -0.077 4.077 16 C -0.048 4.048 17 N -0.198 5.198 18 C -0.054 4.054 19 C -0.156 4.156 20 C -0.143 4.143 21 Br 0.063 6.937 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.025 0.975 26 H 0.136 0.864 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.183 0.817 30 H 0.219 0.781 31 H 0.194 0.806 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.268 -16.415 -5.657 23.120 hybrid contribution 0.094 1.404 0.466 1.482 sum 15.362 -15.011 -5.191 22.097 Atomic orbital electron populations 1.70076 1.07583 1.27864 1.51369 1.25873 0.95718 1.02932 0.94617 0.85452 0.78928 0.79012 0.78030 1.19094 1.20222 1.19972 1.21386 0.92984 0.91274 1.50821 0.92948 1.18103 0.92868 0.91041 0.96001 1.20293 0.97167 0.95284 0.93592 1.21257 0.98377 0.97030 0.97402 1.21242 0.96776 0.95958 0.98914 1.21242 0.99718 1.00617 0.91041 1.18510 0.98897 0.96938 0.92009 1.19766 0.92719 0.99659 0.95516 1.23086 1.00492 0.93671 0.87590 1.67707 1.19192 1.12295 1.20599 1.23519 0.86879 0.94806 1.00235 1.22453 1.03751 0.98040 0.91373 1.22607 0.92797 1.02437 0.96414 1.96766 1.52700 1.91961 1.52236 1.20954 0.97907 0.96295 0.97544 0.92553 0.97862 0.97493 0.86378 0.83095 0.84421 0.81737 0.78144 0.80578 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.20 9.09 25.60 0.23 -29.97 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.06 3.03 5.10 29.10 0.15 3.18 16 10 C -0.06 -2.77 5.07 -19.90 -0.10 -2.87 16 11 C -0.12 -4.62 9.69 22.31 0.22 -4.40 16 12 C -0.11 -3.33 10.03 22.24 0.22 -3.10 16 13 C -0.11 -3.14 8.02 22.48 0.18 -2.96 16 14 C -0.06 -2.03 5.11 -20.05 -0.10 -2.13 16 15 C -0.07 -2.04 5.49 -19.93 -0.11 -2.14 16 16 C 0.11 2.94 10.70 84.96 0.91 3.85 16 17 N -0.49 -12.01 10.35 -195.00 -2.02 -14.03 16 18 C 0.10 1.83 11.17 84.67 0.95 2.78 16 19 C -0.13 -2.38 9.89 22.35 0.22 -2.16 16 20 C -0.05 -1.31 6.24 22.74 0.14 -1.16 16 21 Br -0.02 -0.52 30.49 -20.37 -0.62 -1.14 16 22 C -0.11 -4.27 9.19 22.48 0.21 -4.06 16 23 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.00 0.18 8.09 -2.39 -0.02 0.16 16 25 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 26 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 27 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 28 H 0.14 3.35 6.98 -2.91 -0.02 3.33 16 29 H 0.17 4.30 8.05 -2.91 -0.02 4.27 16 30 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.11 4.36 8.05 -2.91 -0.02 4.34 16 Total: -1.00 -66.45 302.76 4.38 -62.08 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.13 Total: 6.53 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.57 Total: -44.30 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.73 Total: -69.74 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.62 Total: -1.14 kcal Total: -66.45 4.38 -62.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243062122.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.296 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds