Wall clock time and date at job start Tue Mar 31 2020 11:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31697 * 119.71976 * 2 1 4 4 C 1.32013 * 121.86901 * 180.29121 * 3 2 1 5 5 Br 1.89098 * 119.46526 * 179.74805 * 4 3 2 6 6 C 1.38522 * 121.06252 * 359.72515 * 4 3 2 7 7 C 1.38260 * 119.30993 * 0.02562 * 6 4 3 8 8 C 1.39603 * 119.71870 * 179.75373 * 2 1 3 9 9 C 1.47869 * 120.55077 * 0.02562 * 8 2 1 10 10 C 1.39168 * 120.33279 * 244.44537 * 9 8 2 11 11 C 1.38078 * 119.98177 * 179.72216 * 10 9 8 12 12 C 1.38925 * 120.67404 * 0.55257 * 11 10 9 13 13 C 1.36430 * 120.68926 * 359.72642 * 12 11 10 14 14 C 1.40748 * 119.98689 * 359.97438 * 13 12 11 15 15 C 1.40877 * 120.33571 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00403 * 204.74791 * 15 14 13 17 17 C 1.40075 * 119.99868 * 24.75059 * 15 14 13 18 18 N 1.30777 * 119.99587 * 17.63056 * 17 15 14 19 19 Si 1.86790 * 120.00193 * 197.62869 * 17 15 14 20 20 H 1.48501 * 109.47146 * 89.99669 * 19 17 15 21 21 H 1.48499 * 109.47155 * 209.99893 * 19 17 15 22 22 H 1.48501 * 109.47188 * 330.00056 * 19 17 15 23 23 H 1.09002 * 109.47073 * 270.25020 * 1 2 3 24 24 H 1.09006 * 109.47011 * 30.24446 * 1 2 3 25 25 H 1.08993 * 109.47427 * 150.24475 * 1 2 3 26 26 H 1.08008 * 120.34200 * 180.02562 * 6 4 3 27 27 H 1.07999 * 120.84740 * 179.97438 * 7 6 4 28 28 H 1.08005 * 120.01026 * 359.97438 * 10 9 8 29 29 H 1.08006 * 119.66384 * 180.27688 * 11 10 9 30 30 H 1.08009 * 119.65801 * 179.74003 * 12 11 10 31 31 H 1.07999 * 120.00731 * 179.97438 * 13 12 11 32 32 H 0.97004 * 119.99545 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4791 1.1933 -0.0057 5 35 4.3468 2.8734 -0.0125 6 6 4.2378 0.0343 -0.0063 7 6 3.5999 -1.1923 -0.0013 8 6 2.1991 -1.2124 0.0052 9 6 1.4657 -2.4964 0.0102 10 6 1.5667 -3.3593 1.0974 11 6 0.8743 -4.5539 1.0969 12 6 0.0821 -4.9134 0.0137 13 6 -0.0321 -4.0910 -1.0688 14 6 0.6564 -2.8637 -1.0956 15 6 0.5433 -2.0086 -2.2095 16 1 1.3287 -1.3006 -2.4287 17 6 -0.5880 -2.0767 -3.0327 18 7 -1.6758 -2.6611 -2.6020 19 14 -0.5429 -1.3329 -4.7455 20 1 -0.0804 -2.3559 -5.7175 21 1 -1.9038 -0.8726 -5.1213 22 1 0.3915 -0.1788 -4.7595 23 1 -0.3633 0.0045 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3634 -0.8921 -0.5100 26 1 5.3165 0.0884 -0.0105 27 1 4.1670 -2.1114 -0.0021 28 1 2.1833 -3.0927 1.9431 29 1 0.9528 -5.2176 1.9453 30 1 -0.4492 -5.8537 0.0289 31 1 -0.6507 -4.3816 -1.9050 32 1 -2.4591 -2.7086 -3.1722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243557780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:50 Heat of formation + Delta-G solvation = 43.521832 kcal Electronic energy + Delta-G solvation = -18119.485971 eV Core-core repulsion = 15283.235695 eV Total energy + Delta-G solvation = -2836.250277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.84902 -37.57453 -33.95165 -33.04932 -32.49805 -30.56046 -29.68512 -28.64618 -26.80329 -25.25588 -22.89363 -21.68354 -20.99796 -19.95291 -17.45511 -16.19964 -15.96843 -15.50924 -14.94794 -14.27425 -14.24391 -13.45138 -13.32697 -12.78675 -12.70486 -12.35215 -12.16025 -11.89307 -11.45518 -11.37038 -11.29297 -11.07697 -10.75334 -10.58889 -10.44265 -10.20189 -9.85052 -9.71506 -9.33580 -9.25195 -9.05256 -8.19821 -7.58899 -7.41838 -6.96720 -4.56318 1.37302 1.70828 1.71410 2.61949 2.81886 2.98921 3.03146 3.11720 3.79948 4.14855 4.44145 4.89043 5.31964 5.34493 5.43833 5.56267 5.82861 6.05376 6.10942 6.26731 6.31461 6.40818 6.48425 6.60266 6.76209 6.88014 6.96591 7.05008 7.17059 7.30480 7.37961 7.70436 7.82815 7.93741 8.05888 8.30929 8.41949 8.64885 8.74150 9.93557 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.005186 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.839954 B = 5398.138518 C = 6675.191880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.157 3.843 3 N -0.468 5.468 4 C 0.102 3.898 5 Br -0.039 7.039 6 C -0.147 4.147 7 C -0.082 4.082 8 C -0.006 4.006 9 C -0.195 4.195 10 C -0.066 4.066 11 C -0.242 4.242 12 C -0.098 4.098 13 C -0.158 4.158 14 C 0.132 3.868 15 C -0.447 4.447 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.780 5.780 19 Si 0.902 3.098 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.260 1.260 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 5.115 2.564 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.017 3.983 3 N -0.179 5.179 4 C -0.114 4.114 5 Br 0.045 6.955 6 C -0.170 4.170 7 C -0.108 4.108 8 C -0.008 4.008 9 C -0.198 4.198 10 C -0.085 4.085 11 C -0.261 4.261 12 C -0.117 4.117 13 C -0.177 4.177 14 C 0.129 3.871 15 C -0.475 4.475 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.404 5.404 19 Si 0.726 3.274 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.183 1.183 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.837 6.498 2.493 9.757 hybrid contribution 0.291 -0.747 -0.755 1.102 sum 7.129 5.751 1.738 9.322 Atomic orbital electron populations 1.21035 0.87858 1.05847 1.02121 1.21590 0.97211 0.86234 0.93289 1.67104 1.07618 1.30532 1.12641 1.22395 0.91946 0.90745 1.06323 1.96626 1.75674 1.25443 1.97767 1.21695 1.00560 0.91695 1.03018 1.21787 0.94256 0.97243 0.97521 1.19759 0.92456 0.94605 0.94008 1.18311 1.10025 0.94127 0.97299 1.20498 0.98115 0.93866 0.95980 1.20266 1.06779 0.99018 1.00061 1.20499 0.98213 0.98232 0.94727 1.21065 1.03754 0.94176 0.98752 1.17437 0.88385 0.91152 0.90097 1.19503 1.03492 1.17132 1.07377 0.90347 1.25922 0.94515 0.93822 0.99767 1.69779 1.01626 1.32454 1.36497 0.86365 0.78829 0.80398 0.81780 1.19050 1.19966 1.18335 0.91852 0.91895 0.86013 0.84853 0.84499 0.89296 0.89299 0.89355 0.86170 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 9.44 36.00 0.34 -1.94 16 2 C 0.16 3.26 6.23 -82.14 -0.51 2.75 16 3 N -0.47 -9.48 10.22 -7.52 -0.08 -9.56 16 4 C 0.10 1.83 7.17 -17.37 -0.12 1.70 16 5 Br -0.04 -0.57 33.86 -68.01 -2.30 -2.88 16 6 C -0.15 -2.41 9.81 -39.47 -0.39 -2.80 16 7 C -0.08 -1.46 9.90 -38.88 -0.38 -1.84 16 8 C -0.01 -0.12 4.40 -104.75 -0.46 -0.58 16 9 C -0.20 -4.29 4.69 -104.22 -0.49 -4.78 16 10 C -0.07 -1.38 9.74 -39.29 -0.38 -1.76 16 11 C -0.24 -4.99 10.03 -39.39 -0.40 -5.38 16 12 C -0.10 -2.11 9.96 -39.98 -0.40 -2.51 16 13 C -0.16 -3.73 8.64 -39.29 -0.34 -4.06 16 14 C 0.13 3.13 4.55 -106.56 -0.48 2.65 16 15 C -0.45 -10.64 6.15 -37.89 -0.23 -10.88 16 16 H 0.08 1.92 7.06 -52.49 -0.37 1.55 16 17 C 0.08 1.82 5.14 -17.31 -0.09 1.73 16 18 N -0.78 -18.09 10.96 55.55 0.61 -17.48 16 19 Si 0.90 17.77 29.59 -169.99 -5.03 12.74 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.12 2.77 4.30 -51.93 -0.22 2.55 16 26 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 30 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.12 2.91 6.17 -52.49 -0.32 2.59 16 32 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -24.48 294.20 -9.72 -34.20 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.01 Total: 6.23 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.34 Total: -27.70 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.53 Total: -27.03 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.30 Total: -2.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -24.48 -9.72 -34.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243557780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.721 kcal (2) G-P(sol) polarization free energy of solvation -24.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds