Wall clock time and date at job start Tue Mar 31 2020 11:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31697 * 119.71976 * 2 1 4 4 C 1.32013 * 121.86901 * 180.29121 * 3 2 1 5 5 Br 1.89098 * 119.46526 * 179.74805 * 4 3 2 6 6 C 1.38522 * 121.06252 * 359.72515 * 4 3 2 7 7 C 1.38260 * 119.30993 * 0.02562 * 6 4 3 8 8 C 1.39603 * 119.71870 * 179.75373 * 2 1 3 9 9 C 1.47869 * 120.55077 * 0.02562 * 8 2 1 10 10 C 1.39168 * 120.33279 * 244.44537 * 9 8 2 11 11 C 1.38078 * 119.98177 * 179.72216 * 10 9 8 12 12 C 1.38925 * 120.67404 * 0.55257 * 11 10 9 13 13 C 1.36430 * 120.68926 * 359.72642 * 12 11 10 14 14 C 1.40748 * 119.98689 * 359.97438 * 13 12 11 15 15 C 1.40877 * 120.33571 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00403 * 204.74791 * 15 14 13 17 17 C 1.40075 * 119.99868 * 24.75059 * 15 14 13 18 18 N 1.30777 * 119.99587 * 17.63056 * 17 15 14 19 19 Si 1.86790 * 120.00193 * 197.62869 * 17 15 14 20 20 H 1.48501 * 109.47146 * 89.99669 * 19 17 15 21 21 H 1.48499 * 109.47155 * 209.99893 * 19 17 15 22 22 H 1.48501 * 109.47188 * 330.00056 * 19 17 15 23 23 H 1.09002 * 109.47073 * 270.25020 * 1 2 3 24 24 H 1.09006 * 109.47011 * 30.24446 * 1 2 3 25 25 H 1.08993 * 109.47427 * 150.24475 * 1 2 3 26 26 H 1.08008 * 120.34200 * 180.02562 * 6 4 3 27 27 H 1.07999 * 120.84740 * 179.97438 * 7 6 4 28 28 H 1.08005 * 120.01026 * 359.97438 * 10 9 8 29 29 H 1.08006 * 119.66384 * 180.27688 * 11 10 9 30 30 H 1.08009 * 119.65801 * 179.74003 * 12 11 10 31 31 H 1.07999 * 120.00731 * 179.97438 * 13 12 11 32 32 H 0.97004 * 119.99545 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4791 1.1933 -0.0057 5 35 4.3468 2.8734 -0.0125 6 6 4.2378 0.0343 -0.0063 7 6 3.5999 -1.1923 -0.0013 8 6 2.1991 -1.2124 0.0052 9 6 1.4657 -2.4964 0.0102 10 6 1.5667 -3.3593 1.0974 11 6 0.8743 -4.5539 1.0969 12 6 0.0821 -4.9134 0.0137 13 6 -0.0321 -4.0910 -1.0688 14 6 0.6564 -2.8637 -1.0956 15 6 0.5433 -2.0086 -2.2095 16 1 1.3287 -1.3006 -2.4287 17 6 -0.5880 -2.0767 -3.0327 18 7 -1.6758 -2.6611 -2.6020 19 14 -0.5429 -1.3329 -4.7455 20 1 -0.0804 -2.3559 -5.7175 21 1 -1.9038 -0.8726 -5.1213 22 1 0.3915 -0.1788 -4.7595 23 1 -0.3633 0.0045 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3634 -0.8921 -0.5100 26 1 5.3165 0.0884 -0.0105 27 1 4.1670 -2.1114 -0.0021 28 1 2.1833 -3.0927 1.9431 29 1 0.9528 -5.2176 1.9453 30 1 -0.4492 -5.8537 0.0289 31 1 -0.6507 -4.3816 -1.9050 32 1 -2.4591 -2.7086 -3.1722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243557780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:49 Heat of formation + Delta-G solvation = 33.617614 kcal Electronic energy + Delta-G solvation = -18119.915450 eV Core-core repulsion = 15283.235695 eV Total energy + Delta-G solvation = -2836.679756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32848 -39.21613 -35.64834 -34.54702 -33.95894 -31.99280 -31.35031 -30.22796 -28.34832 -26.93560 -24.39492 -23.18776 -22.67848 -21.54756 -19.17584 -17.71436 -17.43828 -17.09565 -16.49169 -15.85815 -15.79568 -14.95566 -14.94090 -14.40977 -14.14481 -13.93574 -13.75840 -13.45754 -13.10523 -12.95243 -12.89756 -12.69344 -12.38009 -12.19946 -11.83318 -11.48776 -11.43827 -11.34846 -11.00448 -10.72474 -10.53737 -9.68943 -9.29844 -9.06667 -8.65576 -6.32172 -0.08022 0.28065 0.36348 0.96741 1.13278 1.36754 1.45584 1.50702 2.17055 2.66886 2.74002 3.45615 3.68863 3.93552 3.98439 4.15931 4.35823 4.49770 4.62964 4.65726 4.79097 4.85556 4.91576 5.06594 5.12367 5.29551 5.32397 5.44430 5.48735 5.67950 5.71853 6.03291 6.10068 6.23108 6.35177 6.68095 6.83222 6.91603 7.02667 8.26422 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.005186 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.839954 B = 5398.138518 C = 6675.191880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.139 3.861 3 N -0.487 5.487 4 C 0.089 3.911 5 Br -0.008 7.008 6 C -0.135 4.135 7 C -0.077 4.077 8 C -0.029 4.029 9 C -0.193 4.193 10 C -0.073 4.073 11 C -0.239 4.239 12 C -0.104 4.104 13 C -0.184 4.184 14 C 0.111 3.889 15 C -0.464 4.464 16 H 0.062 0.938 17 C 0.050 3.950 18 N -0.805 5.805 19 Si 0.956 3.044 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.270 1.270 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 5.431 3.195 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.001 4.001 3 N -0.198 5.198 4 C -0.127 4.127 5 Br 0.076 6.924 6 C -0.157 4.157 7 C -0.103 4.103 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.091 4.091 11 C -0.258 4.258 12 C -0.122 4.122 13 C -0.203 4.203 14 C 0.108 3.892 15 C -0.492 4.492 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.430 5.430 19 Si 0.779 3.221 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.194 1.194 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.189 0.811 27 H 0.177 0.823 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.576 6.806 3.132 11.388 hybrid contribution -0.124 -0.787 -0.831 1.152 sum 8.452 6.018 2.301 10.628 Atomic orbital electron populations 1.20884 0.88554 1.04568 1.02241 1.21532 0.97165 0.86849 0.94536 1.67108 1.08969 1.30361 1.13411 1.22960 0.91567 0.92869 1.05330 1.96648 1.74572 1.23530 1.97641 1.22072 1.02304 0.90484 1.00870 1.22055 0.93205 0.98848 0.96240 1.19790 0.93767 0.93769 0.95851 1.18532 1.09225 0.94855 0.96949 1.20812 0.98299 0.93736 0.96260 1.20623 1.05558 0.99299 1.00355 1.20761 0.98309 0.98722 0.94397 1.21049 1.04831 0.95044 0.99368 1.17665 0.89263 0.91356 0.90898 1.19410 1.03680 1.17576 1.08579 0.91940 1.26446 0.94014 0.94131 1.02149 1.69808 1.02074 1.33615 1.37517 0.85563 0.78794 0.79297 0.78463 1.18543 1.19008 1.19415 0.91074 0.91894 0.88433 0.81066 0.82347 0.86956 0.86482 0.87380 0.87792 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.44 71.24 0.67 -3.74 16 2 C 0.14 5.77 6.23 42.91 0.27 6.03 16 3 N -0.49 -19.35 10.22 -177.72 -1.82 -21.17 16 4 C 0.09 3.01 7.17 84.73 0.61 3.62 16 5 Br -0.01 -0.21 33.86 -20.37 -0.69 -0.90 16 6 C -0.14 -4.04 9.81 22.34 0.22 -3.82 16 7 C -0.08 -2.58 9.90 22.73 0.23 -2.36 16 8 C -0.03 -1.18 4.40 -19.95 -0.09 -1.27 16 9 C -0.19 -8.46 4.69 -19.60 -0.09 -8.55 16 10 C -0.07 -2.91 9.74 22.46 0.22 -2.69 16 11 C -0.24 -9.42 10.03 22.40 0.22 -9.20 16 12 C -0.10 -4.40 9.96 22.01 0.22 -4.18 16 13 C -0.18 -8.83 8.64 22.46 0.19 -8.63 16 14 C 0.11 5.37 4.55 -21.12 -0.10 5.27 16 15 C -0.46 -22.82 6.15 23.36 0.14 -22.68 16 16 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 17 C 0.05 2.35 5.14 85.30 0.44 2.79 16 18 N -0.81 -38.56 10.96 21.85 0.24 -38.32 16 19 Si 0.96 37.17 29.59 68.60 2.03 39.20 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 25 H 0.10 4.62 4.30 -2.39 -0.01 4.61 16 26 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 27 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 28 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.10 5.25 6.17 -2.91 -0.02 5.23 16 32 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 Total: -1.00 -52.85 294.20 4.06 -48.79 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.15 Total: 21.81 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 3.15 Total: -49.40 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -1.58 Total: -59.49 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.90 kcal Total: -52.85 4.06 -48.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243557780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.403 kcal (2) G-P(sol) polarization free energy of solvation -52.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds