Wall clock time and date at job start Tue Mar 31 2020 11:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31763 * 119.69664 * 2 1 4 4 C 1.31961 * 121.83692 * 180.02562 * 3 2 1 5 5 Br 1.89096 * 119.49854 * 179.97438 * 4 3 2 6 6 C 1.38442 * 121.00319 * 359.97438 * 4 3 2 7 7 C 1.38364 * 119.26920 * 359.75002 * 6 4 3 8 8 C 1.39271 * 119.69351 * 180.02562 * 2 1 3 9 9 C 1.48406 * 120.52239 * 359.95065 * 8 2 1 10 10 C 1.39727 * 120.00334 * 310.00149 * 9 8 2 11 11 C 1.38390 * 120.38068 * 179.97438 * 10 9 8 12 12 C 1.37717 * 120.37847 * 0.28369 * 11 10 9 13 13 C 1.40753 * 119.98830 * 359.51574 * 12 11 10 14 14 C 1.41426 * 120.18722 * 180.25287 * 13 12 11 15 15 H 1.07997 * 120.00169 * 204.62115 * 14 13 12 16 16 C 1.39939 * 119.99891 * 24.62432 * 14 13 12 17 17 N 1.30825 * 119.99888 * 17.76974 * 16 14 13 18 18 Si 1.86801 * 119.99650 * 197.77694 * 16 14 13 19 19 H 1.48501 * 109.47148 * 59.99708 * 18 16 14 20 20 H 1.48503 * 109.46653 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47025 * 299.99363 * 18 16 14 22 22 C 1.38732 * 119.99987 * 130.02782 * 9 8 2 23 23 H 1.08999 * 109.47060 * 269.98139 * 1 2 3 24 24 H 1.09002 * 109.46825 * 29.98218 * 1 2 3 25 25 H 1.08998 * 109.46913 * 149.97685 * 1 2 3 26 26 H 1.07992 * 120.36500 * 180.02562 * 6 4 3 27 27 H 1.08003 * 120.83670 * 180.28165 * 7 6 4 28 28 H 1.08004 * 119.80820 * 0.02562 * 10 9 8 29 29 H 1.07996 * 119.80880 * 180.02562 * 11 10 9 30 30 H 1.07999 * 120.00399 * 179.74287 * 12 11 10 31 31 H 0.97006 * 119.99690 * 180.02562 * 17 16 14 32 32 H 1.08008 * 120.18532 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1446 0.0000 4 6 3.4784 1.1939 -0.0005 5 35 4.3474 2.8733 -0.0012 6 6 4.2354 0.0347 -0.0005 7 6 3.5946 -1.1916 0.0053 8 6 2.1969 -1.2098 -0.0005 9 6 1.4597 -2.4978 0.0000 10 6 0.4383 -2.7179 0.9277 11 6 -0.2546 -3.9159 0.9348 12 6 0.0587 -4.9070 0.0314 13 6 1.0819 -4.7005 -0.9128 14 6 1.4035 -5.7134 -1.8459 15 1 2.3892 -5.7491 -2.2859 16 6 0.4446 -6.6694 -2.1991 17 7 -0.8216 -6.4461 -1.9573 18 14 0.9726 -8.2645 -3.0154 19 1 1.8970 -8.9991 -2.1149 20 1 -0.2237 -9.1016 -3.2859 21 1 1.6642 -7.9608 -4.2940 22 6 1.7851 -3.4837 -0.9203 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 5.3140 0.0870 -0.0005 27 1 4.1602 -2.1118 0.0099 28 1 0.1875 -1.9483 1.6427 29 1 -1.0427 -4.0760 1.6556 30 1 -0.4831 -5.8411 0.0451 31 1 -1.4863 -7.1090 -2.2018 32 1 2.5747 -3.3172 -1.6382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243558718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:57 Heat of formation + Delta-G solvation = 41.057621 kcal Electronic energy + Delta-G solvation = -17408.156837 eV Core-core repulsion = 14571.799705 eV Total energy + Delta-G solvation = -2836.357133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19076 -37.55518 -34.22732 -33.07464 -32.69421 -30.67664 -29.98742 -28.74051 -26.89576 -25.36680 -23.16875 -22.05205 -20.71048 -20.36493 -17.51062 -16.34128 -16.07185 -15.50870 -14.94822 -14.67989 -14.44518 -13.64104 -13.37510 -13.02970 -12.82399 -12.52423 -12.39627 -12.06430 -11.70006 -11.61665 -11.23840 -11.09035 -10.95323 -10.60388 -10.56871 -10.43547 -9.96208 -9.66531 -9.57475 -9.37978 -9.22931 -8.61033 -7.63411 -7.33564 -6.86810 -4.48300 0.98078 1.36247 1.43762 2.68177 2.77883 3.00990 3.02985 3.13069 3.83006 3.85248 4.49165 4.51085 4.99794 5.05803 5.13422 5.40028 5.54994 5.69136 5.89162 5.94561 6.09613 6.17699 6.30535 6.36706 6.42712 6.71233 6.77323 6.93078 7.07850 7.17202 7.37791 7.67001 7.86782 7.89460 7.93185 8.11432 8.48262 8.75946 8.80420 10.08082 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.030399 B = 0.003057 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.863348 B = 9156.163305 C = 9748.609030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.140 3.860 3 N -0.463 5.463 4 C 0.108 3.892 5 Br -0.028 7.028 6 C -0.143 4.143 7 C -0.067 4.067 8 C -0.042 4.042 9 C -0.044 4.044 10 C -0.215 4.215 11 C -0.106 4.106 12 C -0.152 4.152 13 C 0.108 3.892 14 C -0.464 4.464 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.200 4.200 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.282 0.718 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 11.126 3.345 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.000 4.000 3 N -0.174 5.174 4 C -0.108 4.108 5 Br 0.056 6.944 6 C -0.165 4.165 7 C -0.093 4.093 8 C -0.044 4.044 9 C -0.044 4.044 10 C -0.234 4.234 11 C -0.125 4.125 12 C -0.172 4.172 13 C 0.106 3.894 14 C -0.493 4.493 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.220 4.220 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.158 0.842 27 H 0.163 0.837 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.362 12.441 3.295 14.357 hybrid contribution 0.484 -1.800 -0.431 1.913 sum 6.846 10.641 2.865 12.973 Atomic orbital electron populations 1.20830 0.87965 1.03871 1.03143 1.21424 0.97145 0.86495 0.94918 1.67128 1.07838 1.30007 1.12404 1.22507 0.91800 0.91351 1.05171 1.96686 1.75384 1.24662 1.97648 1.21817 1.01070 0.91520 1.02119 1.21777 0.93912 0.97817 0.95794 1.20127 0.93425 0.94815 0.96079 1.18079 0.97118 0.90834 0.98418 1.20377 1.01144 0.98789 1.03122 1.20629 0.98753 0.94275 0.98825 1.21451 1.01190 0.99099 0.95434 1.17512 0.90508 0.90558 0.90818 1.19542 0.99118 1.08958 1.21708 0.90390 1.25896 0.94258 0.99440 0.94514 1.69799 1.01259 1.34110 1.36570 0.86362 0.79150 0.81037 0.80193 1.18766 1.20277 1.18959 1.21004 1.05378 0.93775 1.01798 0.90409 0.91190 0.89001 0.84213 0.83705 0.89007 0.88969 0.86260 0.90670 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 8.62 36.01 0.31 -1.26 16 2 C 0.14 2.44 6.78 -82.24 -0.56 1.88 16 3 N -0.46 -7.96 10.22 -7.62 -0.08 -8.04 16 4 C 0.11 1.67 7.16 -17.42 -0.12 1.55 16 5 Br -0.03 -0.35 33.86 -68.01 -2.30 -2.65 16 6 C -0.14 -2.03 9.82 -39.46 -0.39 -2.42 16 7 C -0.07 -1.06 9.67 -38.96 -0.38 -1.43 16 8 C -0.04 -0.76 5.48 -104.75 -0.57 -1.34 16 9 C -0.04 -0.90 4.72 -104.97 -0.50 -1.39 16 10 C -0.21 -4.37 7.93 -38.97 -0.31 -4.68 16 11 C -0.11 -2.30 10.01 -39.72 -0.40 -2.69 16 12 C -0.15 -3.69 8.69 -38.82 -0.34 -4.03 16 13 C 0.11 2.70 5.57 -106.87 -0.60 2.11 16 14 C -0.46 -11.66 9.05 -37.73 -0.34 -12.01 16 15 H 0.08 1.88 7.91 -52.49 -0.41 1.47 16 16 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 17 N -0.79 -19.53 10.96 55.55 0.61 -18.92 16 18 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 22 C -0.20 -4.54 9.27 -38.53 -0.36 -4.90 16 23 H 0.08 1.11 7.49 -51.93 -0.39 0.72 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.09 1.56 6.45 -51.93 -0.33 1.22 16 26 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.09 1.68 6.84 -52.48 -0.36 1.32 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 32 H 0.09 2.06 8.05 -52.48 -0.42 1.63 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -25.81 297.38 -10.02 -35.83 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.07 Total: 5.32 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -4.63 Total: -28.86 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.53 Total: -26.96 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.30 Total: -2.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.81 -10.02 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243558718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.887 kcal (2) G-P(sol) polarization free energy of solvation -25.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds