Wall clock time and date at job start Tue Mar 31 2020 11:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47410 * 300.00269 * 3 2 1 6 6 H 1.48504 * 109.46870 * 60.00272 * 3 2 1 7 7 C 1.40028 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00600 * 163.20707 * 7 2 1 9 9 C 1.41056 * 119.99893 * 343.20792 * 7 2 1 10 10 C 1.41311 * 120.55049 * 335.70316 * 9 7 2 11 11 C 1.36608 * 118.41247 * 179.72647 * 10 9 7 12 12 C 1.39895 * 119.46511 * 0.49306 * 11 10 9 13 13 C 1.47965 * 119.45099 * 179.76788 * 12 11 10 14 14 C 1.39625 * 120.14417 * 0.02562 * 13 12 11 15 15 C 1.37913 * 119.85277 * 180.29865 * 14 13 12 16 16 C 1.38415 * 120.14415 * 359.70249 * 15 14 13 17 17 C 1.38366 * 120.29225 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.92344 * 179.97438 * 17 16 15 19 19 Br 1.96599 * 109.47403 * 270.02295 * 18 17 16 20 20 C 1.37952 * 120.14683 * 0.02835 * 17 16 15 21 21 N 1.33023 * 121.09646 * 359.48749 * 12 11 10 22 22 C 1.31257 * 121.73103 * 0.25883 * 21 12 11 23 23 H 0.97000 * 120.00367 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.79172 * 359.97438 * 10 9 7 25 25 H 1.07997 * 120.27096 * 180.26425 * 11 10 9 26 26 H 1.08006 * 120.07422 * 0.02562 * 14 13 12 27 27 H 1.08005 * 119.93001 * 179.67437 * 15 14 13 28 28 H 1.08003 * 119.85109 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.47122 * 30.02679 * 18 17 16 30 30 H 1.09006 * 109.46718 * 150.02332 * 18 17 16 31 31 H 1.07998 * 120.07557 * 179.97438 * 20 17 16 32 32 H 1.07997 * 119.80000 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7018 1.3465 -0.0006 5 1 1.8830 2.3965 -1.2124 6 1 1.8830 2.3964 1.2126 7 6 2.0080 -1.2126 -0.0005 8 1 3.0534 -1.2325 -0.2707 9 6 1.3479 -2.4084 0.3518 10 6 0.1970 -2.3788 1.1712 11 6 -0.4111 -3.5623 1.4807 12 6 0.1233 -4.7591 0.9916 13 6 -0.5325 -6.0412 1.3314 14 6 -1.6755 -6.0532 2.1333 15 6 -2.2784 -7.2522 2.4513 16 6 -1.7564 -8.4413 1.9724 17 6 -0.6279 -8.4358 1.1717 18 6 -0.0663 -9.7354 0.6553 19 35 1.2475 -10.4376 1.9383 20 6 -0.0152 -7.2435 0.8462 21 7 1.2080 -4.7632 0.2216 22 6 1.8249 -3.6525 -0.1078 23 1 -0.4851 0.8400 0.0004 24 1 -0.1950 -1.4426 1.5404 25 1 -1.2950 -3.5743 2.1011 26 1 -2.0840 -5.1260 2.5073 27 1 -3.1595 -7.2633 3.0759 28 1 -2.2321 -9.3775 2.2247 29 1 -0.8742 -10.4565 0.5311 30 1 0.4195 -9.5649 -0.3056 31 1 0.8658 -7.2406 0.2215 32 1 2.7031 -3.6920 -0.7352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243924436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:18 Heat of formation + Delta-G solvation = 35.193728 kcal Electronic energy + Delta-G solvation = -17103.968732 eV Core-core repulsion = 14267.357322 eV Total energy + Delta-G solvation = -2836.611410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.20969 -37.95220 -34.42063 -33.15376 -31.42002 -30.79892 -29.81289 -29.07102 -25.85151 -25.59483 -22.82093 -22.02045 -20.83353 -19.97441 -17.57601 -16.51095 -15.64090 -15.33626 -15.08655 -14.39018 -13.96337 -13.75926 -13.51442 -13.02322 -12.81832 -12.70815 -12.65941 -11.95864 -11.76521 -11.63367 -11.35642 -11.32222 -10.87774 -10.77033 -10.59373 -9.96068 -9.80802 -9.77528 -9.60568 -8.75044 -8.40991 -8.37714 -8.15295 -7.36645 -7.04342 -4.62221 1.22014 1.61315 2.18440 2.63309 2.88636 2.91971 2.96908 3.11657 3.69335 4.16510 4.58243 4.69556 4.82212 5.24484 5.35289 5.37336 5.57255 5.60479 5.76978 5.98338 6.03526 6.33259 6.34376 6.56945 6.63685 6.72028 6.81519 6.85080 6.92611 7.09896 7.21470 7.36596 7.63411 7.71426 7.81858 8.25489 8.44776 8.54590 9.48813 9.81729 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002923 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.747053 B = 9577.995237 C =10292.904311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.145 4.145 11 C -0.120 4.120 12 C -0.012 4.012 13 C 0.024 3.976 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.101 4.101 18 C -0.027 4.027 19 Br -0.165 7.165 20 C -0.094 4.094 21 N -0.446 5.446 22 C -0.016 4.016 23 H 0.287 0.713 24 H 0.127 0.873 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -12.788 2.796 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.170 4.170 11 C -0.140 4.140 12 C -0.146 4.146 13 C 0.023 3.977 14 C -0.147 4.147 15 C -0.133 4.133 16 C -0.153 4.153 17 C -0.102 4.102 18 C -0.141 4.141 19 Br -0.084 7.084 20 C -0.113 4.113 21 N -0.154 5.154 22 C -0.182 4.182 23 H 0.098 0.902 24 H 0.145 0.855 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.918 -13.680 2.909 14.117 hybrid contribution -0.381 1.853 -0.003 1.892 sum -2.299 -11.827 2.906 12.394 Atomic orbital electron populations 1.69779 1.07914 1.30094 1.32046 1.26105 0.94866 1.02043 0.91930 0.86115 0.81048 0.79983 0.78905 1.17973 1.19606 1.19371 1.19741 0.98095 0.90840 1.37339 0.89383 1.18635 0.92036 0.93722 0.89167 1.21338 0.98640 0.96998 0.99977 1.21305 0.99194 0.93392 1.00129 1.18747 0.97844 0.90650 1.07314 1.18662 0.92916 0.92122 0.93985 1.21258 0.96101 0.97947 0.99396 1.20868 0.99867 0.92291 1.00316 1.20769 0.96920 0.97835 0.99738 1.19353 0.96989 0.93063 1.00766 1.23537 0.96810 0.97066 0.96699 1.97390 1.60459 1.87314 1.63285 1.21086 0.99848 0.90499 0.99902 1.66900 1.06558 1.31981 1.09931 1.22456 1.02620 0.87826 1.05262 0.90181 0.85512 0.88047 0.86041 0.86507 0.86892 0.87882 0.87589 0.85219 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.39 10.91 55.55 0.61 -17.79 16 2 C 0.07 1.64 5.18 -17.33 -0.09 1.55 16 3 Si 0.92 16.99 29.59 -169.99 -5.03 11.96 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.43 -10.52 9.07 -37.84 -0.34 -10.86 16 8 H 0.09 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.07 1.75 5.59 -106.64 -0.60 1.15 16 10 C -0.14 -3.57 8.74 -39.00 -0.34 -3.91 16 11 C -0.12 -2.74 9.38 -39.55 -0.37 -3.11 16 12 C -0.01 -0.28 6.74 -82.75 -0.56 -0.83 16 13 C 0.02 0.48 5.88 -104.89 -0.62 -0.14 16 14 C -0.13 -2.18 9.42 -39.18 -0.37 -2.54 16 15 C -0.12 -1.67 10.03 -39.64 -0.40 -2.06 16 16 C -0.13 -1.84 9.69 -39.47 -0.38 -2.23 16 17 C -0.10 -1.49 5.19 -104.68 -0.54 -2.03 16 18 C -0.03 -0.31 6.73 36.01 0.24 -0.07 16 19 Br -0.17 -2.12 33.92 -68.01 -2.31 -4.43 16 20 C -0.09 -1.68 9.22 -39.18 -0.36 -2.04 16 21 N -0.45 -10.74 9.39 -9.10 -0.09 -10.83 16 22 C -0.02 -0.39 10.97 -16.77 -0.18 -0.57 16 23 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 24 H 0.13 3.16 6.20 -52.48 -0.33 2.83 16 25 H 0.10 2.03 6.15 -52.49 -0.32 1.70 16 26 H 0.12 1.95 6.15 -52.48 -0.32 1.63 16 27 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 28 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.10 0.96 8.08 -51.93 -0.42 0.55 16 30 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.13 2.43 7.52 -52.49 -0.39 2.03 16 32 H 0.13 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -26.36 299.52 -10.24 -36.59 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.02 Total: 7.70 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -4.91 Total: -27.72 kcal Atomic # 7 Polarization: -29.14 SS G_CDS: 0.52 Total: -28.62 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 35 Polarization: -2.12 SS G_CDS: -2.31 Total: -4.43 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.36 -10.24 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243924436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.785 kcal (2) G-P(sol) polarization free energy of solvation -26.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds